Wall clock time and date at job start Wed Apr 1 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 120.00206 * 2 1 4 4 O 1.21525 * 120.00189 * 180.99404 * 3 2 1 5 5 C 1.48134 * 120.00229 * 0.98879 * 3 2 1 6 6 C 1.39247 * 120.04733 * 172.92548 * 5 3 2 7 7 N 1.32197 * 120.06153 * 179.97438 * 6 5 3 8 8 C 1.31925 * 120.16536 * 0.02562 * 7 6 5 9 9 C 1.39657 * 120.09564 * 0.02562 * 8 7 6 10 10 N 1.38982 * 120.03344 * 179.97438 * 9 8 7 11 11 C 1.48529 * 111.00288 * 178.90830 * 10 9 8 12 12 C 1.54934 * 103.22687 * 159.72158 * 11 10 9 13 13 C 1.54595 * 102.92164 * 322.58482 * 12 11 10 14 14 C 1.47905 * 110.99775 * 296.30744 * 10 9 8 15 15 N 1.32336 * 119.93747 * 0.23844 * 9 8 7 16 16 C 1.46502 * 119.99671 * 180.02562 * 2 1 3 17 17 H 1.08998 * 110.88465 * 183.88498 * 16 2 1 18 18 C 1.55157 * 111.00845 * 59.99753 * 16 2 1 19 19 C 1.54328 * 102.94198 * 277.43039 * 18 16 2 20 20 N 1.47024 * 107.26985 * 337.80443 * 19 18 16 21 21 C 1.36939 * 125.64892 * 178.89855 * 20 19 18 22 22 H 1.07998 * 120.00356 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99711 * 0.02562 * 21 20 19 24 24 N 1.31620 * 120.00363 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99904 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47083 * 59.99625 * 25 23 21 27 27 H 1.48494 * 109.47103 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46928 * 299.99798 * 25 23 21 29 29 C 1.47422 * 108.70599 * 358.94233 * 20 19 18 30 30 H 1.09004 * 109.47142 * 83.90949 * 1 2 3 31 31 H 1.09000 * 109.47354 * 203.90997 * 1 2 3 32 32 H 1.09001 * 109.46918 * 323.91017 * 1 2 3 33 33 H 1.08001 * 119.96871 * 359.95918 * 6 5 3 34 34 H 1.08004 * 119.95013 * 179.97438 * 8 7 6 35 35 H 1.09002 * 110.66922 * 278.15751 * 11 10 9 36 36 H 1.09005 * 110.66347 * 41.28691 * 11 10 9 37 37 H 1.09007 * 110.72352 * 204.22695 * 12 11 10 38 38 H 1.08994 * 110.72447 * 80.94622 * 12 11 10 39 39 H 1.09001 * 110.31191 * 263.03958 * 13 12 11 40 40 H 1.09000 * 110.30557 * 140.87303 * 13 12 11 41 41 H 1.09000 * 109.91947 * 333.50521 * 14 10 9 42 42 H 1.09000 * 109.92092 * 94.60531 * 14 10 9 43 43 H 1.09000 * 110.71780 * 35.78929 * 18 16 2 44 44 H 1.08996 * 110.72016 * 159.06555 * 18 16 2 45 45 H 1.08997 * 109.88614 * 97.22291 * 19 18 16 46 46 H 1.09003 * 109.88055 * 218.23539 * 19 18 16 47 47 H 0.96990 * 120.00524 * 180.02562 * 24 23 21 48 48 H 1.09004 * 110.36694 * 265.29265 * 29 20 19 49 49 H 1.09000 * 110.36730 * 142.96672 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3540 1.1672 -0.0183 5 6 1.3985 2.4500 0.0221 6 6 2.0881 3.6505 0.1707 7 7 1.4277 4.7955 0.1899 8 6 0.1140 4.8052 0.0692 9 6 -0.5845 3.6050 -0.0790 10 7 -1.9685 3.6167 -0.2056 11 6 -2.4990 2.2401 -0.3773 12 6 -3.9885 2.3814 0.0249 13 6 -3.9358 3.3864 1.1985 14 6 -2.6082 4.1456 1.0185 15 7 0.0722 2.4562 -0.0936 16 6 2.1975 -1.2688 -0.0006 17 1 3.2717 -1.0974 0.0685 18 6 1.8483 -2.1121 -1.2553 19 6 0.5309 -2.8061 -0.8496 20 7 0.4792 -2.8197 0.6196 21 6 -0.5413 -3.3290 1.3776 22 1 -0.4845 -3.2906 2.4554 23 6 -1.6487 -3.8945 0.7606 24 7 -1.7176 -3.9418 -0.5530 25 14 -3.0411 -4.5886 1.7945 26 1 -3.6133 -3.5113 2.6413 27 1 -4.0975 -5.1303 0.9025 28 1 -2.5194 -5.6755 2.6617 29 6 1.7073 -2.1933 1.1418 30 1 -0.3634 0.1090 -1.0219 31 1 -0.3634 -0.9395 0.4165 32 1 -0.3633 0.8305 0.6054 33 1 3.1635 3.6462 0.2704 34 1 -0.4221 5.7427 0.0858 35 1 -2.4096 1.9200 -1.4155 36 1 -1.9856 1.5444 0.2865 37 1 -4.3915 1.4238 0.3549 38 1 -4.5747 2.7836 -0.8013 39 1 -3.9424 2.8565 2.1510 40 1 -4.7772 4.0771 1.1431 41 1 -1.9622 3.9732 1.8793 42 1 -2.7997 5.2128 0.9061 43 1 1.6943 -1.4688 -2.1216 44 1 2.6269 -2.8485 -1.4539 45 1 -0.3185 -2.2495 -1.2453 46 1 0.5163 -3.8265 -1.2328 47 1 -2.4915 -4.3366 -0.9841 48 1 2.4567 -2.9536 1.3624 49 1 1.4849 -1.6084 2.0343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033475375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:39 Heat of formation + Delta-G solvation = 74.078108 kcal Electronic energy + Delta-G solvation = -32030.997347 eV Core-core repulsion = 27994.967065 eV Total energy + Delta-G solvation = -4036.030283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.73902 -41.09627 -39.78906 -38.97256 -36.25223 -35.33247 -34.22197 -33.56579 -31.18564 -30.50504 -30.11874 -29.52731 -27.70233 -26.82920 -25.81925 -25.32190 -23.04078 -22.18985 -21.96645 -21.73024 -20.44758 -19.15015 -18.92362 -18.40222 -17.90963 -17.61587 -17.32030 -17.16185 -16.65430 -16.64087 -15.75311 -15.59766 -15.51333 -15.06192 -14.63452 -14.45161 -14.30459 -13.95522 -13.88047 -13.73467 -13.55961 -13.45341 -13.34838 -13.31903 -12.84654 -12.79110 -12.53953 -12.39404 -12.32673 -12.20564 -12.09379 -12.06959 -11.87654 -11.77913 -11.58747 -11.49774 -11.36990 -10.98739 -10.70191 -10.11043 -9.77254 -9.45892 -8.80130 -7.81616 -5.17444 -0.75231 -0.13893 1.48525 1.49937 1.51087 1.56602 1.77951 2.28663 2.50851 2.55729 2.86400 3.09830 3.32344 3.37849 3.51319 3.62599 3.67696 3.80261 3.86565 3.98535 4.01080 4.07380 4.25102 4.27494 4.31434 4.48519 4.52312 4.62292 4.65481 4.71794 4.77388 4.84553 4.87085 4.88062 4.97504 5.00344 5.00661 5.04616 5.12726 5.18272 5.32471 5.42885 5.48407 5.54863 5.66190 5.77639 5.79651 6.08111 6.19447 6.28793 6.52733 6.91097 7.12009 7.77119 8.41816 9.27673 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.004576 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.112077 B = 6117.891199 C = 8495.409112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.568 5.568 3 C 0.565 3.435 4 O -0.561 6.561 5 C 0.043 3.957 6 C 0.080 3.920 7 N -0.429 5.429 8 C 0.087 3.913 9 C 0.243 3.757 10 N -0.451 5.451 11 C 0.035 3.965 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.040 3.960 15 N -0.452 5.452 16 C 0.128 3.872 17 H 0.115 0.885 18 C -0.141 4.141 19 C 0.189 3.811 20 N -0.613 5.613 21 C -0.241 4.241 22 H 0.079 0.921 23 C -0.052 4.052 24 N -0.944 5.944 25 Si 0.970 3.030 26 H -0.276 1.276 27 H -0.296 1.296 28 H -0.283 1.283 29 C 0.127 3.873 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.189 0.811 34 H 0.211 0.789 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.120 0.880 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.024 0.976 46 H 0.008 0.992 47 H 0.247 0.753 48 H 0.045 0.955 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 18.834 1.922 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.297 5.297 3 C 0.352 3.648 4 O -0.441 6.441 5 C -0.097 4.097 6 C -0.078 4.078 7 N -0.142 5.142 8 C -0.080 4.080 9 C 0.005 3.995 10 N -0.170 5.170 11 C -0.092 4.092 12 C -0.163 4.163 13 C -0.163 4.163 14 C -0.085 4.085 15 N -0.175 5.175 16 C 0.024 3.976 17 H 0.133 0.867 18 C -0.180 4.180 19 C 0.064 3.936 20 N -0.340 5.340 21 C -0.369 4.369 22 H 0.097 0.903 23 C -0.246 4.246 24 N -0.592 5.592 25 Si 0.798 3.202 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.209 1.209 29 C 0.001 3.999 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.206 0.794 34 H 0.227 0.773 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.042 0.958 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.414 18.994 1.458 19.102 hybrid contribution -0.640 -1.556 0.595 1.785 sum -2.054 17.438 2.053 17.678 Atomic orbital electron populations 1.22547 0.77339 1.04866 1.01266 1.47704 1.08451 1.04788 1.68743 1.18031 0.86377 0.83255 0.77122 1.90730 1.13245 1.87147 1.52940 1.21840 0.90310 0.95444 1.02091 1.23690 1.02616 0.86574 0.94880 1.68635 1.08614 1.27738 1.09183 1.24142 0.90142 0.99083 0.94624 1.21620 0.93001 0.90307 0.94561 1.62158 0.98890 1.21478 1.34486 1.23329 0.95758 0.87818 1.02265 1.22540 0.94394 1.00203 0.99166 1.22433 0.97160 0.98205 0.98526 1.23167 0.95225 1.02212 0.87895 1.68981 1.08027 1.28367 1.12173 1.22280 0.96822 0.82270 0.96263 0.86736 1.23119 0.99127 0.98826 0.96896 1.20917 0.92906 0.96388 0.83379 1.44726 1.17941 1.69151 1.02162 1.19270 0.95885 1.31640 0.90137 0.90324 1.25466 1.00583 1.01784 0.96724 1.70150 1.30293 1.50611 1.08176 0.85295 0.79019 0.78346 0.77500 1.20189 1.22183 1.20917 1.21982 0.89123 0.93769 0.95017 0.94458 0.89551 0.88740 0.79421 0.77277 0.90704 0.92382 0.90732 0.89528 0.91026 0.88048 0.93277 0.86164 0.91278 0.89301 0.95792 0.97378 0.94383 0.93776 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.09 7.05 127.77 0.90 4.00 16 2 N -0.57 -20.63 2.91 -817.88 -2.38 -23.01 16 3 C 0.57 19.61 7.66 86.87 0.67 20.27 16 4 O -0.56 -20.87 15.74 -3.79 -0.06 -20.93 16 5 C 0.04 1.29 6.61 41.82 0.28 1.57 16 6 C 0.08 2.07 10.76 84.88 0.91 2.98 16 7 N -0.43 -9.84 10.48 -193.60 -2.03 -11.87 16 8 C 0.09 1.68 10.65 85.02 0.91 2.59 16 9 C 0.24 5.65 6.04 133.22 0.81 6.45 16 10 N -0.45 -9.08 5.30 -688.89 -3.65 -12.73 16 11 C 0.04 0.83 5.99 86.65 0.52 1.35 16 12 C -0.12 -2.28 7.06 31.80 0.22 -2.05 16 13 C -0.13 -1.71 6.93 31.47 0.22 -1.49 16 14 C 0.04 0.57 6.24 86.45 0.54 1.10 16 15 N -0.45 -12.99 4.82 -181.80 -0.88 -13.87 16 16 C 0.13 4.67 3.66 46.39 0.17 4.84 16 17 H 0.11 3.95 7.02 -2.39 -0.02 3.93 16 18 C -0.14 -5.28 6.48 31.78 0.21 -5.08 16 19 C 0.19 8.96 4.31 86.73 0.37 9.34 16 20 N -0.61 -29.69 1.87 -691.96 -1.30 -30.99 16 21 C -0.24 -12.73 9.81 84.03 0.82 -11.91 16 22 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 23 C -0.05 -2.78 5.49 84.86 0.47 -2.31 16 24 N -0.94 -53.83 10.31 21.65 0.22 -53.61 16 25 Si 0.97 43.72 29.55 68.60 2.03 45.75 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 28 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 29 C 0.13 5.13 6.44 86.86 0.56 5.69 16 30 H 0.04 1.44 8.13 -2.38 -0.02 1.42 16 31 H 0.09 3.89 4.35 -2.39 -0.01 3.88 16 32 H 0.09 3.33 3.82 -2.39 -0.01 3.32 16 33 H 0.19 4.43 7.65 -2.91 -0.02 4.41 16 34 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.66 5.10 -2.38 -0.01 1.65 16 37 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.77 7.75 -2.39 -0.02 0.75 16 42 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.02 1.26 6.43 -2.39 -0.02 1.24 16 46 H 0.01 0.43 7.51 -2.39 -0.02 0.41 16 47 H 0.25 13.86 8.31 -92.72 -0.77 13.09 16 48 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -64.21 376.86 1.49 -62.72 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.97 Total: 21.19 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 8.57 Total: 37.34 kcal Atomic # 7 Polarization: -136.05 SS G_CDS: -10.01 Total: -146.06 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.21 1.49 -62.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033475375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.796 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds