Wall clock time and date at job start Wed Apr 1 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 119.99687 * 2 1 4 4 C 1.38402 * 119.99887 * 179.72336 * 2 1 3 5 5 C 1.39890 * 119.99716 * 4.73185 * 4 2 1 6 6 N 1.31456 * 120.01065 * 179.70635 * 5 4 2 7 7 C 1.33285 * 120.00963 * 0.56191 * 6 5 4 8 8 C 1.47815 * 120.00595 * 179.73216 * 7 6 5 9 9 O 1.21554 * 120.00478 * 157.76789 * 8 7 6 10 10 N 1.34783 * 119.99467 * 337.76056 * 8 7 6 11 11 C 1.47142 * 121.01500 * 0.60753 * 10 8 7 12 12 C 1.53043 * 107.68307 * 237.41239 * 11 10 8 13 13 C 1.51142 * 111.10461 * 305.58640 * 12 11 10 14 14 H 1.09007 * 108.46114 * 175.38696 * 13 12 11 15 15 C 1.53998 * 113.17246 * 55.13862 * 13 12 11 16 16 H 1.09001 * 112.71709 * 75.96009 * 15 13 12 17 17 C 1.56010 * 100.38623 * 196.33199 * 15 13 12 18 18 C 1.54504 * 102.62063 * 36.87086 * 17 15 13 19 19 N 1.46472 * 113.23101 * 294.92796 * 13 12 11 20 20 C 1.36935 * 126.05208 * 330.48134 * 19 13 12 21 21 H 1.08003 * 120.00367 * 359.97438 * 20 19 13 22 22 C 1.38819 * 119.99666 * 179.97438 * 20 19 13 23 23 N 1.31615 * 119.99984 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99613 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47286 * 90.00043 * 24 22 20 26 26 H 1.48501 * 109.46851 * 209.99824 * 24 22 20 27 27 H 1.48501 * 109.47120 * 329.99621 * 24 22 20 28 28 C 1.46529 * 121.00832 * 180.32019 * 10 8 7 29 29 C 1.39410 * 119.99353 * 359.71153 * 7 6 5 30 30 N 1.32051 * 119.98891 * 359.97438 * 29 7 6 31 31 H 1.09001 * 109.47144 * 90.00021 * 1 2 3 32 32 H 1.09000 * 109.47201 * 209.99767 * 1 2 3 33 33 H 1.08998 * 109.47582 * 330.00032 * 1 2 3 34 34 H 1.09001 * 109.47425 * 0.02562 * 3 2 1 35 35 H 1.09007 * 109.46732 * 120.00026 * 3 2 1 36 36 H 1.08995 * 109.47367 * 239.99775 * 3 2 1 37 37 H 1.07996 * 119.99783 * 359.97438 * 5 4 2 38 38 H 1.08997 * 109.80993 * 356.95260 * 11 10 8 39 39 H 1.08997 * 109.82003 * 117.80257 * 11 10 8 40 40 H 1.08997 * 109.15311 * 66.00525 * 12 11 10 41 41 H 1.09001 * 109.15235 * 185.16943 * 12 11 10 42 42 H 1.09010 * 110.78009 * 155.14949 * 17 15 13 43 43 H 1.09000 * 110.78258 * 278.58498 * 17 15 13 44 44 H 1.09000 * 109.90447 * 96.54184 * 18 17 15 45 45 H 1.08996 * 109.89987 * 217.59945 * 18 17 15 46 46 H 0.96995 * 119.99678 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.34584 * 244.66169 * 28 10 8 48 48 H 1.09004 * 109.34590 * 4.20531 * 28 10 8 49 49 H 1.08004 * 120.00626 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1570 -1.1986 0.0058 5 6 1.4610 -2.4084 -0.0883 6 7 2.1184 -3.5468 -0.0887 7 6 3.4475 -3.5491 0.0119 8 6 4.1861 -4.8295 0.0175 9 8 5.3607 -4.8549 -0.2942 10 7 3.5572 -5.9687 0.3684 11 6 2.1327 -5.9657 0.7371 12 6 2.0165 -6.5465 2.1482 13 6 2.6723 -7.9056 2.2331 14 1 2.6376 -8.2415 3.2695 15 6 4.1426 -7.8986 1.7749 16 1 4.8125 -7.4638 2.5166 17 6 4.3789 -9.4263 1.5648 18 6 3.0244 -9.9021 0.9940 19 7 2.0073 -8.9202 1.4123 20 6 0.6766 -8.9515 1.0910 21 1 0.0153 -8.1782 1.4530 22 6 0.1776 -9.9772 0.2998 23 7 0.9836 -10.9193 -0.1419 24 14 -1.6376 -10.0194 -0.1392 25 1 -1.8587 -9.2718 -1.4031 26 1 -2.0716 -11.4286 -0.3152 27 1 -2.4254 -9.3914 0.9517 28 6 4.2696 -7.2490 0.3884 29 6 4.1409 -2.3438 0.1115 30 7 3.4809 -1.2002 0.1056 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.4891 2.0972 0.0005 35 1 2.8241 1.3264 0.8901 36 1 2.8241 1.3265 -0.8899 37 1 0.3838 -2.4071 -0.1651 38 1 1.7501 -4.9451 0.7249 39 1 1.5681 -6.5802 0.0359 40 1 2.5004 -5.8713 2.8539 41 1 0.9627 -6.6410 2.4104 42 1 5.1824 -9.5984 0.8484 43 1 4.5932 -9.9186 2.5134 44 1 3.0743 -9.9439 -0.0941 45 1 2.7793 -10.8868 1.3920 46 1 0.6348 -11.6362 -0.6944 47 1 3.8427 -7.9115 -0.3645 48 1 5.3224 -7.0799 0.1621 49 1 5.2179 -2.3455 0.1926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036717251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:28 Heat of formation + Delta-G solvation = 61.519923 kcal Electronic energy + Delta-G solvation = -31432.926946 eV Core-core repulsion = 27396.352100 eV Total energy + Delta-G solvation = -4036.574846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.43933 -41.16003 -39.62008 -37.96747 -36.57673 -35.22358 -34.47824 -33.15823 -32.10926 -30.95122 -29.34592 -29.17932 -27.63729 -26.63828 -25.60019 -25.24551 -23.91773 -23.37396 -21.84593 -21.46151 -19.99517 -19.07645 -18.55926 -18.33502 -17.84724 -17.21235 -16.88527 -16.73712 -16.38940 -16.12655 -15.97049 -15.66483 -15.43056 -15.29798 -14.96546 -14.76477 -14.35471 -14.27045 -13.92993 -13.86880 -13.46809 -13.32949 -13.17713 -13.15347 -12.95840 -12.78743 -12.72047 -12.57107 -12.45886 -12.34270 -11.99685 -11.88115 -11.59721 -11.50400 -11.39072 -11.22783 -11.11417 -11.09485 -10.61581 -9.89628 -9.59276 -8.79820 -8.75140 -7.75956 -5.08664 -0.41702 0.04507 1.48764 1.50251 1.58196 1.67539 1.70533 2.02351 2.55361 2.71060 3.05242 3.22043 3.37852 3.43198 3.58284 3.68786 3.90036 3.96289 4.02499 4.08834 4.20915 4.34134 4.37829 4.42115 4.48950 4.52888 4.56968 4.59235 4.69543 4.77083 4.79803 4.83630 4.88552 4.93677 4.99135 5.00953 5.10582 5.24247 5.29446 5.34823 5.45853 5.57987 5.65103 5.66537 5.71506 5.83084 5.96479 6.27415 6.30918 6.46672 6.74692 7.08488 7.18102 7.87615 8.54816 9.35775 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.003351 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.149004 B = 8354.849070 C =10006.288240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.094 3.906 4 C 0.370 3.630 5 C -0.002 4.002 6 N -0.382 5.382 7 C -0.068 4.068 8 C 0.578 3.422 9 O -0.578 6.578 10 N -0.584 5.584 11 C 0.096 3.904 12 C -0.122 4.122 13 C 0.161 3.839 14 H 0.015 0.985 15 C -0.101 4.101 16 H 0.106 0.894 17 C -0.129 4.129 18 C 0.185 3.815 19 N -0.608 5.608 20 C -0.215 4.215 21 H 0.088 0.912 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.969 3.031 25 H -0.290 1.290 26 H -0.302 1.302 27 H -0.265 1.265 28 C 0.131 3.869 29 C 0.175 3.825 30 N -0.520 5.520 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.202 0.798 38 H 0.148 0.852 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.010 0.990 45 H 0.005 0.995 46 H 0.241 0.759 47 H 0.047 0.953 48 H 0.085 0.915 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 25.653 3.101 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.302 5.302 3 C -0.048 4.048 4 C 0.127 3.873 5 C -0.175 4.175 6 N -0.098 5.098 7 C -0.206 4.206 8 C 0.366 3.634 9 O -0.459 6.459 10 N -0.313 5.313 11 C -0.026 4.026 12 C -0.161 4.161 13 C 0.055 3.945 14 H 0.032 0.968 15 C -0.121 4.121 16 H 0.124 0.876 17 C -0.168 4.168 18 C 0.060 3.940 19 N -0.333 5.333 20 C -0.344 4.344 21 H 0.106 0.894 22 C -0.264 4.264 23 N -0.605 5.605 24 Si 0.798 3.202 25 H -0.217 1.217 26 H -0.229 1.229 27 H -0.190 1.190 28 C 0.008 3.992 29 C 0.014 3.986 30 N -0.243 5.243 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.219 0.781 38 H 0.164 0.836 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.028 0.972 45 H 0.023 0.977 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.103 0.897 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.546 25.689 2.833 25.851 hybrid contribution -0.901 -1.111 -0.573 1.541 sum -0.355 24.578 2.261 24.684 Atomic orbital electron populations 1.22239 0.75199 1.05417 1.03649 1.46641 1.07170 1.02490 1.73851 1.21800 0.97508 0.83601 1.01888 1.19878 0.89581 0.88682 0.89129 1.23866 1.02810 0.86001 1.04850 1.67994 1.07467 1.28654 1.05640 1.21312 0.91041 0.94758 1.13499 1.17867 0.85577 0.83132 0.76819 1.90715 1.16759 1.86584 1.51807 1.47957 1.12249 1.06642 1.64410 1.22712 0.79414 1.05399 0.95070 1.21553 1.01338 0.95985 0.97254 1.20511 0.91096 0.89554 0.93375 0.96770 1.22780 0.97262 0.95658 0.96400 0.87553 1.23022 0.97503 0.94808 1.01446 1.20960 0.86076 0.91116 0.95834 1.44549 1.04360 1.25394 1.58986 1.19336 0.83893 1.06916 1.24268 0.89449 1.25548 1.01560 0.97830 1.01415 1.70183 1.34513 1.15053 1.40765 0.85199 0.80716 0.76036 0.78204 1.21731 1.22919 1.18986 1.21501 0.97207 0.83359 0.97098 1.23438 1.01662 0.85523 0.87999 1.68192 1.07084 1.28801 1.20219 0.90875 0.89816 0.87866 0.87460 0.92549 0.92873 0.78099 0.83629 0.93439 0.90868 0.91314 0.90276 0.90650 0.97219 0.97688 0.94924 0.93468 0.89692 0.79825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 10.04 127.77 1.28 1.62 16 2 N -0.59 -7.10 3.37 -753.49 -2.54 -9.64 16 3 C 0.09 0.86 10.19 127.77 1.30 2.16 16 4 C 0.37 7.07 7.37 133.34 0.98 8.05 16 5 C 0.00 -0.03 10.34 85.15 0.88 0.85 16 6 N -0.38 -10.36 6.53 -183.79 -1.20 -11.56 16 7 C -0.07 -2.02 6.46 41.74 0.27 -1.75 16 8 C 0.58 20.50 7.62 86.78 0.66 21.17 16 9 O -0.58 -22.66 15.97 -3.89 -0.06 -22.73 16 10 N -0.58 -21.40 2.93 -822.21 -2.41 -23.80 16 11 C 0.10 3.45 5.99 86.27 0.52 3.97 16 12 C -0.12 -4.30 5.19 30.00 0.16 -4.14 16 13 C 0.16 6.48 2.85 44.73 0.13 6.60 16 14 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 15 C -0.10 -3.59 3.88 -9.20 -0.04 -3.63 16 16 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 17 C -0.13 -4.84 6.29 32.15 0.20 -4.63 16 18 C 0.19 9.23 4.64 86.71 0.40 9.63 16 19 N -0.61 -30.23 3.12 -674.32 -2.10 -32.34 16 20 C -0.22 -11.58 9.02 84.04 0.76 -10.82 16 21 H 0.09 4.44 6.69 -2.91 -0.02 4.42 16 22 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 23 N -0.95 -58.01 10.38 21.65 0.22 -57.78 16 24 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 C 0.13 4.98 5.47 86.59 0.47 5.46 16 29 C 0.17 4.46 10.75 84.94 0.91 5.38 16 30 N -0.52 -11.90 9.71 -191.73 -1.86 -13.76 16 31 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.08 0.31 6.36 -2.39 -0.02 0.30 16 33 H 0.10 0.02 7.92 -2.39 -0.02 0.00 16 34 H 0.11 0.28 7.79 -2.39 -0.02 0.26 16 35 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.20 2.52 6.25 -2.91 -0.02 2.50 16 38 H 0.15 4.66 3.90 -58.49 -0.23 4.43 16 39 H 0.05 2.06 7.48 -2.39 -0.02 2.04 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.46 7.01 -2.39 -0.02 2.45 16 42 H 0.08 2.69 7.97 -2.38 -0.02 2.67 16 43 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.01 0.54 6.98 -2.39 -0.02 0.53 16 45 H 0.00 0.28 7.57 -2.39 -0.02 0.26 16 46 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 47 H 0.05 2.10 6.81 -2.39 -0.02 2.08 16 48 H 0.08 3.12 6.99 -2.38 -0.02 3.11 16 49 H 0.18 4.29 7.80 -2.91 -0.02 4.27 16 Total: -1.00 -74.41 377.28 2.18 -72.23 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.75 Total: 15.31 kcal Atomic # 6 Polarization: 26.98 SS G_CDS: 9.36 Total: 36.34 kcal Atomic # 7 Polarization: -139.00 SS G_CDS: -9.89 Total: -148.89 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.06 Total: -22.73 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.41 2.18 -72.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036717251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.751 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds