Wall clock time and date at job start Wed Apr 1 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99670 * 2 1 4 4 C 1.38504 * 120.00163 * 180.02562 * 2 1 3 5 5 C 1.39600 * 120.04815 * 11.47719 * 4 2 1 6 6 C 1.38285 * 118.02863 * 180.02562 * 5 4 2 7 7 C 1.40071 * 117.99103 * 359.97438 * 6 5 4 8 8 C 1.47855 * 120.09372 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00134 * 22.25788 * 8 7 6 10 10 N 1.34776 * 120.00186 * 202.25316 * 8 7 6 11 11 C 1.46595 * 119.68639 * 179.97438 * 10 8 7 12 12 C 1.53954 * 110.57943 * 227.79999 * 11 10 8 13 13 C 1.51510 * 107.35105 * 308.95136 * 12 11 10 14 14 H 1.09006 * 109.28249 * 306.29587 * 13 12 11 15 15 C 1.55363 * 107.79282 * 64.85130 * 13 12 11 16 16 H 1.08999 * 111.51205 * 50.62183 * 15 13 12 17 17 C 1.53747 * 100.22256 * 168.52080 * 15 13 12 18 18 C 1.55290 * 101.87127 * 320.88817 * 17 15 13 19 19 N 1.45469 * 116.87086 * 181.60247 * 13 12 11 20 20 C 1.36935 * 126.40205 * 30.88137 * 19 13 12 21 21 H 1.07991 * 120.00275 * 359.97438 * 20 19 13 22 22 C 1.38815 * 119.99774 * 179.97438 * 20 19 13 23 23 N 1.31622 * 119.99878 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46894 * 89.99970 * 24 22 20 26 26 H 1.48497 * 109.47037 * 210.00073 * 24 22 20 27 27 H 1.48497 * 109.46739 * 330.00423 * 24 22 20 28 28 C 1.48913 * 119.82093 * 359.59535 * 10 8 7 29 29 N 1.32753 * 119.80972 * 0.27615 * 7 6 5 30 30 N 1.28357 * 122.10251 * 359.42637 * 29 7 6 31 31 H 1.09000 * 109.46921 * 185.31556 * 1 2 3 32 32 H 1.08998 * 109.47137 * 305.31374 * 1 2 3 33 33 H 1.08994 * 109.47507 * 65.31527 * 1 2 3 34 34 H 1.09006 * 109.47091 * 270.00342 * 3 2 1 35 35 H 1.09005 * 109.47342 * 30.00047 * 3 2 1 36 36 H 1.09000 * 109.47125 * 150.00565 * 3 2 1 37 37 H 1.07995 * 120.98726 * 359.97438 * 5 4 2 38 38 H 1.08000 * 121.00296 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.25471 * 107.51907 * 11 10 8 40 40 H 1.09002 * 109.25511 * 348.08890 * 11 10 8 41 41 H 1.08996 * 109.88199 * 189.48545 * 12 11 10 42 42 H 1.09008 * 109.94225 * 68.44521 * 12 11 10 43 43 H 1.08992 * 110.95728 * 79.04300 * 17 15 13 44 44 H 1.08999 * 110.94973 * 202.73595 * 17 15 13 45 45 H 1.08995 * 109.91884 * 141.84861 * 18 17 15 46 46 H 1.09007 * 109.91972 * 263.15487 * 18 17 15 47 47 H 0.96997 * 119.99779 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.91667 * 8.97626 * 28 10 8 49 49 H 1.08998 * 110.81271 * 247.01396 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1576 -1.1995 -0.0005 5 6 1.4816 -2.3968 -0.2415 6 6 2.2139 -3.5698 -0.2318 7 6 3.5893 -3.4841 0.0188 8 6 4.4169 -4.7092 0.0394 9 8 4.0361 -5.7096 -0.5365 10 7 5.5936 -4.7166 0.6965 11 6 6.4083 -5.9351 0.7129 12 6 6.8772 -6.2534 2.1444 13 6 7.5048 -4.9934 2.7049 14 1 8.2766 -4.6406 2.0207 15 6 6.3901 -3.9169 2.8162 16 1 5.5134 -4.3017 3.3372 17 6 7.1186 -2.8558 3.6573 18 6 7.9093 -3.7342 4.6646 19 7 8.0554 -5.0749 4.0489 20 6 8.6056 -6.1830 4.6358 21 1 8.6595 -7.1130 4.0895 22 6 9.0942 -6.1109 5.9331 23 7 9.0291 -4.9773 6.5988 24 14 9.8442 -7.6226 6.7342 25 1 11.3016 -7.6606 6.4522 26 1 9.6252 -7.5652 8.2018 27 1 9.2018 -8.8437 6.1852 28 6 6.0606 -3.4860 1.3930 29 7 4.1468 -2.3003 0.2426 30 7 3.4663 -1.2121 0.2279 31 1 -0.3633 -1.0233 0.0952 32 1 -0.3633 0.5940 0.8386 33 1 -0.3634 0.4291 -0.9337 34 1 2.3791 1.5835 -1.0277 35 1 1.6084 2.0284 0.5139 36 1 3.1499 1.1385 0.5137 37 1 0.4181 -2.4069 -0.4291 38 1 1.7396 -4.5232 -0.4120 39 1 7.2790 -5.7940 0.0726 40 1 5.8162 -6.7686 0.3349 41 1 7.6137 -7.0566 2.1233 42 1 6.0255 -6.5478 2.7578 43 1 7.7955 -2.2659 3.0394 44 1 6.4068 -2.2131 4.1754 45 1 8.8920 -3.2988 4.8454 46 1 7.3572 -3.8136 5.6012 47 1 9.3702 -4.9270 7.5054 48 1 5.2656 -2.7403 1.4023 49 1 6.9493 -3.0808 0.9092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036871708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:19 Heat of formation + Delta-G solvation = 95.787063 kcal Electronic energy + Delta-G solvation = -30955.271640 eV Core-core repulsion = 26920.182729 eV Total energy + Delta-G solvation = -4035.088912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.46545 -39.85265 -38.23347 -37.39931 -35.21301 -33.37128 -32.54886 -32.46503 -31.10130 -29.45650 -28.91346 -27.98090 -26.54109 -25.12158 -24.55049 -23.44657 -22.77667 -22.00368 -20.36736 -19.88435 -19.28880 -18.09165 -17.84511 -17.01556 -16.53301 -16.12609 -15.69081 -15.28320 -15.06852 -15.00352 -14.78963 -14.42823 -14.10835 -13.99755 -13.77809 -13.61529 -13.10063 -13.02428 -12.99739 -12.65317 -12.54331 -12.37576 -12.31875 -11.89856 -11.45796 -11.35513 -11.25319 -10.92329 -10.77974 -10.70997 -10.54921 -10.44227 -10.11611 -10.07416 -9.87489 -9.82695 -9.77664 -9.54963 -9.08675 -8.57225 -8.48040 -8.21899 -6.77470 -5.66508 -2.99007 0.49063 0.62004 2.31922 2.67494 3.01750 3.43179 3.48243 3.49883 3.51692 3.89436 4.15456 4.29125 4.36183 4.54149 4.59544 4.70477 4.81846 4.91118 5.10416 5.13858 5.18183 5.26425 5.35704 5.40004 5.47593 5.49508 5.58164 5.61801 5.70028 5.70747 5.87351 5.96614 6.00274 6.20939 6.31145 6.32110 6.37603 6.47494 6.49438 6.56893 6.67670 6.71179 6.74615 6.94974 7.16409 7.48608 7.61697 7.67630 7.86316 8.14990 8.29855 8.48900 9.24962 9.88598 10.57252 11.46163 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.002670 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.027867 B =10483.284086 C =11519.783777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.604 5.604 3 C 0.091 3.909 4 C 0.353 3.647 5 C -0.190 4.190 6 C -0.024 4.024 7 C -0.027 4.027 8 C 0.577 3.423 9 O -0.547 6.547 10 N -0.586 5.586 11 C 0.115 3.885 12 C -0.128 4.128 13 C 0.166 3.834 14 H 0.022 0.978 15 C -0.126 4.126 16 H 0.076 0.924 17 C -0.134 4.134 18 C 0.177 3.823 19 N -0.596 5.596 20 C -0.222 4.222 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.922 5.922 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.101 3.899 29 N -0.154 5.154 30 N -0.307 5.307 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.038 0.962 46 H 0.053 0.947 47 H 0.251 0.749 48 H 0.127 0.873 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.405 11.544 -15.080 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.317 5.317 3 C -0.051 4.051 4 C 0.114 3.886 5 C -0.223 4.223 6 C -0.052 4.052 7 C -0.177 4.177 8 C 0.362 3.638 9 O -0.425 6.425 10 N -0.316 5.316 11 C -0.008 4.008 12 C -0.167 4.167 13 C 0.058 3.942 14 H 0.039 0.961 15 C -0.146 4.146 16 H 0.094 0.906 17 C -0.173 4.173 18 C 0.053 3.947 19 N -0.320 5.320 20 C -0.351 4.351 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.021 4.021 29 N -0.001 5.001 30 N -0.160 5.160 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.143 0.857 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.236 11.973 -14.832 25.699 hybrid contribution -0.840 -1.486 0.325 1.738 sum -18.077 10.487 -14.507 25.440 Atomic orbital electron populations 1.21870 0.77970 1.03549 1.02183 1.46077 1.05443 1.02989 1.77200 1.21732 0.98109 0.83400 1.01871 1.20113 0.91467 0.87018 0.90017 1.21824 1.02244 0.91364 1.06873 1.22113 0.92622 0.99869 0.90614 1.22497 0.94041 0.94671 1.06458 1.17524 0.80936 0.85867 0.79490 1.90763 1.71901 1.33776 1.46060 1.48489 1.18889 1.13908 1.50348 1.21708 0.94488 0.86541 0.98032 1.21889 1.00972 0.99785 0.94028 1.20689 0.92089 0.92639 0.88831 0.96119 1.22683 0.99132 0.98628 0.94184 0.90567 1.22693 0.98841 0.97136 0.98634 1.21540 0.97177 0.82904 0.93062 1.44248 1.69453 1.08171 1.10144 1.19008 1.31336 0.88710 0.96009 0.90395 1.24784 1.01625 0.97172 0.96995 1.69945 1.51698 1.23889 1.11495 0.86156 0.79058 0.82150 0.78653 1.21683 1.21786 1.20745 1.22938 1.02116 0.85893 0.91175 1.73082 1.28204 0.94564 1.04238 1.73192 1.04051 1.19732 1.19024 0.90243 0.91391 0.91911 0.92868 0.91250 0.89454 0.82951 0.82332 0.91645 0.89336 0.90542 0.91517 0.92209 0.92252 0.94411 0.92866 0.93850 0.85675 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 10.54 59.85 0.63 0.97 16 2 N -0.60 -4.50 3.38 -189.54 -0.64 -5.14 16 3 C 0.09 0.58 10.60 59.85 0.63 1.21 16 4 C 0.35 3.62 7.40 -154.94 -1.15 2.47 16 5 C -0.19 -1.65 9.29 -39.06 -0.36 -2.01 16 6 C -0.02 -0.25 9.71 -38.88 -0.38 -0.63 16 7 C -0.03 -0.37 6.51 -82.85 -0.54 -0.91 16 8 C 0.58 9.23 7.59 -12.33 -0.09 9.14 16 9 O -0.55 -9.73 15.93 5.32 0.08 -9.64 16 10 N -0.59 -9.43 3.01 -172.56 -0.52 -9.95 16 11 C 0.11 1.84 6.33 -3.49 -0.02 1.81 16 12 C -0.13 -2.36 5.45 -26.99 -0.15 -2.50 16 13 C 0.17 3.44 2.57 -67.98 -0.17 3.27 16 14 H 0.02 0.45 7.93 -51.93 -0.41 0.04 16 15 C -0.13 -2.32 2.84 -89.33 -0.25 -2.57 16 16 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 17 C -0.13 -2.55 6.53 -25.13 -0.16 -2.72 16 18 C 0.18 4.35 5.45 -1.86 -0.01 4.34 16 19 N -0.60 -15.18 3.35 -163.02 -0.55 -15.73 16 20 C -0.22 -6.17 9.86 -15.06 -0.15 -6.32 16 21 H 0.08 2.08 7.18 -52.49 -0.38 1.71 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -27.34 10.44 55.49 0.58 -26.76 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.10 1.60 5.53 -3.06 -0.02 1.58 16 29 N -0.15 -2.18 7.49 33.32 0.25 -1.93 16 30 N -0.31 -3.96 10.26 31.21 0.32 -3.64 16 31 H 0.08 0.24 5.55 -51.93 -0.29 -0.05 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 36 H 0.09 0.70 7.25 -51.93 -0.38 0.32 16 37 H 0.15 0.77 6.08 -52.49 -0.32 0.45 16 38 H 0.16 1.46 7.87 -52.49 -0.41 1.05 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.40 6.95 -51.93 -0.36 1.04 16 41 H 0.08 1.42 7.59 -51.93 -0.39 1.02 16 42 H 0.07 1.31 8.12 -51.92 -0.42 0.89 16 43 H 0.06 1.06 8.11 -51.93 -0.42 0.63 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 46 H 0.05 1.45 7.22 -51.93 -0.37 1.07 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.13 1.95 4.07 -117.28 -0.48 1.47 16 49 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -33.85 381.39 -9.58 -43.43 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.55 Total: -0.46 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -2.29 Total: 6.75 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.56 Total: -63.15 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.85 -9.58 -43.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036871708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.220 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds