Wall clock time and date at job start Wed Apr 1 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99670 * 2 1 4 4 C 1.38504 * 120.00163 * 180.02562 * 2 1 3 5 5 C 1.39600 * 120.04815 * 11.47719 * 4 2 1 6 6 C 1.38285 * 118.02863 * 180.02562 * 5 4 2 7 7 C 1.40071 * 117.99103 * 359.97438 * 6 5 4 8 8 C 1.47855 * 120.09372 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00134 * 22.25788 * 8 7 6 10 10 N 1.34776 * 120.00186 * 202.25316 * 8 7 6 11 11 C 1.46595 * 119.68639 * 179.97438 * 10 8 7 12 12 C 1.53954 * 110.57943 * 227.79999 * 11 10 8 13 13 C 1.51510 * 107.35105 * 308.95136 * 12 11 10 14 14 H 1.09006 * 109.28249 * 306.29587 * 13 12 11 15 15 C 1.55363 * 107.79282 * 64.85130 * 13 12 11 16 16 H 1.08999 * 111.51205 * 50.62183 * 15 13 12 17 17 C 1.53747 * 100.22256 * 168.52080 * 15 13 12 18 18 C 1.55290 * 101.87127 * 320.88817 * 17 15 13 19 19 N 1.45469 * 116.87086 * 181.60247 * 13 12 11 20 20 C 1.36935 * 126.40205 * 30.88137 * 19 13 12 21 21 H 1.07991 * 120.00275 * 359.97438 * 20 19 13 22 22 C 1.38815 * 119.99774 * 179.97438 * 20 19 13 23 23 N 1.31622 * 119.99878 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46894 * 89.99970 * 24 22 20 26 26 H 1.48497 * 109.47037 * 210.00073 * 24 22 20 27 27 H 1.48497 * 109.46739 * 330.00423 * 24 22 20 28 28 C 1.48913 * 119.82093 * 359.59535 * 10 8 7 29 29 N 1.32753 * 119.80972 * 0.27615 * 7 6 5 30 30 N 1.28357 * 122.10251 * 359.42637 * 29 7 6 31 31 H 1.09000 * 109.46921 * 185.31556 * 1 2 3 32 32 H 1.08998 * 109.47137 * 305.31374 * 1 2 3 33 33 H 1.08994 * 109.47507 * 65.31527 * 1 2 3 34 34 H 1.09006 * 109.47091 * 270.00342 * 3 2 1 35 35 H 1.09005 * 109.47342 * 30.00047 * 3 2 1 36 36 H 1.09000 * 109.47125 * 150.00565 * 3 2 1 37 37 H 1.07995 * 120.98726 * 359.97438 * 5 4 2 38 38 H 1.08000 * 121.00296 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.25471 * 107.51907 * 11 10 8 40 40 H 1.09002 * 109.25511 * 348.08890 * 11 10 8 41 41 H 1.08996 * 109.88199 * 189.48545 * 12 11 10 42 42 H 1.09008 * 109.94225 * 68.44521 * 12 11 10 43 43 H 1.08992 * 110.95728 * 79.04300 * 17 15 13 44 44 H 1.08999 * 110.94973 * 202.73595 * 17 15 13 45 45 H 1.08995 * 109.91884 * 141.84861 * 18 17 15 46 46 H 1.09007 * 109.91972 * 263.15487 * 18 17 15 47 47 H 0.96997 * 119.99779 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.91667 * 8.97626 * 28 10 8 49 49 H 1.08998 * 110.81271 * 247.01396 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1576 -1.1995 -0.0005 5 6 1.4816 -2.3968 -0.2415 6 6 2.2139 -3.5698 -0.2318 7 6 3.5893 -3.4841 0.0188 8 6 4.4169 -4.7092 0.0394 9 8 4.0361 -5.7096 -0.5365 10 7 5.5936 -4.7166 0.6965 11 6 6.4083 -5.9351 0.7129 12 6 6.8772 -6.2534 2.1444 13 6 7.5048 -4.9934 2.7049 14 1 8.2766 -4.6406 2.0207 15 6 6.3901 -3.9169 2.8162 16 1 5.5134 -4.3017 3.3372 17 6 7.1186 -2.8558 3.6573 18 6 7.9093 -3.7342 4.6646 19 7 8.0554 -5.0749 4.0489 20 6 8.6056 -6.1830 4.6358 21 1 8.6595 -7.1130 4.0895 22 6 9.0942 -6.1109 5.9331 23 7 9.0291 -4.9773 6.5988 24 14 9.8442 -7.6226 6.7342 25 1 11.3016 -7.6606 6.4522 26 1 9.6252 -7.5652 8.2018 27 1 9.2018 -8.8437 6.1852 28 6 6.0606 -3.4860 1.3930 29 7 4.1468 -2.3003 0.2426 30 7 3.4663 -1.2121 0.2279 31 1 -0.3633 -1.0233 0.0952 32 1 -0.3633 0.5940 0.8386 33 1 -0.3634 0.4291 -0.9337 34 1 2.3791 1.5835 -1.0277 35 1 1.6084 2.0284 0.5139 36 1 3.1499 1.1385 0.5137 37 1 0.4181 -2.4069 -0.4291 38 1 1.7396 -4.5232 -0.4120 39 1 7.2790 -5.7940 0.0726 40 1 5.8162 -6.7686 0.3349 41 1 7.6137 -7.0566 2.1233 42 1 6.0255 -6.5478 2.7578 43 1 7.7955 -2.2659 3.0394 44 1 6.4068 -2.2131 4.1754 45 1 8.8920 -3.2988 4.8454 46 1 7.3572 -3.8136 5.6012 47 1 9.3702 -4.9270 7.5054 48 1 5.2656 -2.7403 1.4023 49 1 6.9493 -3.0808 0.9092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036871708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:18 Heat of formation + Delta-G solvation = 74.728995 kcal Electronic energy + Delta-G solvation = -30956.184787 eV Core-core repulsion = 26920.182729 eV Total energy + Delta-G solvation = -4036.002058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.37702 -41.11882 -39.69711 -38.07837 -36.75050 -34.42387 -34.16808 -33.71591 -32.30643 -31.20917 -29.59056 -29.35608 -27.45235 -26.57217 -25.75796 -24.74947 -23.99858 -23.04855 -21.93734 -21.45689 -20.74161 -19.15389 -18.54095 -18.37590 -17.96265 -17.21310 -16.89537 -16.73316 -16.31632 -16.06746 -15.70557 -15.60075 -15.51845 -15.12772 -15.03694 -14.73108 -14.61433 -14.36938 -14.03464 -13.77846 -13.50667 -13.35705 -13.17648 -13.08831 -13.08592 -12.85167 -12.69629 -12.60398 -12.23063 -12.10413 -12.00962 -11.78057 -11.68981 -11.58164 -11.47118 -11.32698 -11.22565 -10.84357 -10.70437 -10.36766 -9.76760 -8.88932 -8.85210 -7.82315 -5.16402 -0.38324 -0.16506 1.45677 1.47405 1.55704 1.58951 1.70387 1.88815 2.50857 2.59138 2.92552 3.35936 3.41431 3.48382 3.52093 3.66705 3.82681 3.88536 3.99791 4.06417 4.20545 4.23041 4.29484 4.42981 4.45555 4.50372 4.55133 4.60951 4.68469 4.72416 4.76152 4.78015 4.86004 4.87615 4.92184 4.97503 5.02489 5.05129 5.11332 5.16278 5.20988 5.48070 5.54633 5.58211 5.68084 5.78571 5.95337 6.03848 6.22085 6.24472 6.93737 7.11036 7.62219 7.80786 8.49773 9.29587 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.002670 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.027867 B =10483.284086 C =11519.783777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.599 5.599 3 C 0.087 3.913 4 C 0.346 3.654 5 C -0.171 4.171 6 C -0.030 4.030 7 C -0.050 4.050 8 C 0.577 3.423 9 O -0.570 6.570 10 N -0.592 5.592 11 C 0.123 3.877 12 C -0.118 4.118 13 C 0.156 3.844 14 H 0.024 0.976 15 C -0.110 4.110 16 H 0.060 0.940 17 C -0.118 4.118 18 C 0.183 3.817 19 N -0.616 5.616 20 C -0.229 4.229 21 H 0.084 0.916 22 C -0.070 4.070 23 N -0.953 5.953 24 Si 0.974 3.026 25 H -0.287 1.287 26 H -0.296 1.296 27 H -0.269 1.269 28 C 0.114 3.886 29 N -0.173 5.173 30 N -0.333 5.333 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.194 0.806 38 H 0.172 0.828 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.005 0.995 46 H 0.017 0.983 47 H 0.245 0.755 48 H 0.137 0.863 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.903 12.405 -16.970 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.310 5.310 3 C -0.056 4.056 4 C 0.105 3.895 5 C -0.204 4.204 6 C -0.058 4.058 7 C -0.201 4.201 8 C 0.364 3.636 9 O -0.449 6.449 10 N -0.322 5.322 11 C 0.001 3.999 12 C -0.157 4.157 13 C 0.049 3.951 14 H 0.041 0.959 15 C -0.130 4.130 16 H 0.079 0.921 17 C -0.157 4.157 18 C 0.058 3.942 19 N -0.341 5.341 20 C -0.358 4.358 21 H 0.102 0.898 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.803 3.197 25 H -0.214 1.214 26 H -0.223 1.223 27 H -0.194 1.194 28 C -0.008 4.008 29 N -0.019 5.019 30 N -0.187 5.187 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.211 0.789 38 H 0.189 0.811 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.023 0.977 46 H 0.035 0.965 47 H 0.054 0.946 48 H 0.153 0.847 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.779 12.866 -16.763 28.944 hybrid contribution -0.192 -1.607 0.856 1.831 sum -19.971 11.259 -15.907 27.904 Atomic orbital electron populations 1.22182 0.75539 1.04869 1.03756 1.46471 1.06927 1.02335 1.75303 1.21830 0.97777 0.83596 1.02363 1.20417 0.90993 0.88677 0.89406 1.22199 1.03863 0.89775 1.04551 1.22289 0.91545 1.01314 0.90636 1.22301 0.95098 0.93767 1.08908 1.17835 0.80621 0.86438 0.78680 1.90736 1.72300 1.34886 1.46958 1.48521 1.19267 1.13766 1.50656 1.21597 0.95142 0.86979 0.96213 1.21766 1.00019 0.98574 0.95341 1.20903 0.92759 0.94730 0.86705 0.95908 1.22533 0.97453 0.97310 0.95753 0.92129 1.22556 0.98840 0.96691 0.97604 1.21319 0.95714 0.83701 0.93427 1.44537 1.69629 1.07953 1.11941 1.19396 1.30519 0.89686 0.96247 0.89798 1.25616 1.02875 0.99971 0.97815 1.70167 1.52995 1.25791 1.11355 0.85127 0.78152 0.79269 0.77128 1.21389 1.22310 1.19408 1.22867 1.02932 0.86001 0.89023 1.72869 1.29198 0.94844 1.05011 1.73086 1.05737 1.19195 1.20638 0.89045 0.90038 0.90110 0.92243 0.88752 0.91460 0.78901 0.81065 0.90132 0.89023 0.90836 0.93103 0.90256 0.90372 0.97680 0.96491 0.94580 0.84674 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 10.54 127.77 1.35 1.62 16 2 N -0.60 -7.04 3.38 -753.58 -2.54 -9.58 16 3 C 0.09 0.89 10.60 127.77 1.35 2.25 16 4 C 0.35 6.22 7.40 133.21 0.99 7.21 16 5 C -0.17 -2.42 9.29 22.61 0.21 -2.21 16 6 C -0.03 -0.58 9.71 22.73 0.22 -0.36 16 7 C -0.05 -1.33 6.51 42.00 0.27 -1.06 16 8 C 0.58 18.06 7.59 86.79 0.66 18.72 16 9 O -0.57 -19.84 15.93 -3.89 -0.06 -19.91 16 10 N -0.59 -18.59 3.01 -818.12 -2.47 -21.06 16 11 C 0.12 3.85 6.33 86.68 0.55 4.40 16 12 C -0.12 -4.37 5.45 30.43 0.17 -4.20 16 13 C 0.16 6.51 2.57 45.51 0.12 6.63 16 14 H 0.02 0.98 7.93 -2.38 -0.02 0.96 16 15 C -0.11 -4.03 2.84 -9.96 -0.03 -4.06 16 16 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 17 C -0.12 -4.48 6.53 31.63 0.21 -4.28 16 18 C 0.18 9.33 5.45 86.83 0.47 9.80 16 19 N -0.62 -32.27 3.35 -669.67 -2.24 -34.52 16 20 C -0.23 -13.01 9.86 84.03 0.83 -12.19 16 21 H 0.08 4.53 7.18 -2.92 -0.02 4.51 16 22 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 23 N -0.95 -58.77 10.44 21.65 0.23 -58.55 16 24 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 C 0.11 3.49 5.53 85.69 0.47 3.96 16 29 N -0.17 -4.71 7.49 -48.51 -0.36 -5.08 16 30 N -0.33 -8.14 10.26 -55.17 -0.57 -8.71 16 31 H 0.09 0.11 5.55 -2.39 -0.01 0.09 16 32 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.09 0.50 8.07 -2.38 -0.02 0.48 16 36 H 0.07 1.00 7.25 -2.39 -0.02 0.98 16 37 H 0.19 1.00 6.08 -2.91 -0.02 0.98 16 38 H 0.17 2.80 7.87 -2.91 -0.02 2.77 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.09 2.84 6.95 -2.39 -0.02 2.82 16 41 H 0.07 2.73 7.59 -2.39 -0.02 2.71 16 42 H 0.05 2.02 8.12 -2.38 -0.02 2.00 16 43 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 44 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.00 0.28 7.77 -2.39 -0.02 0.26 16 46 H 0.02 0.97 7.22 -2.38 -0.02 0.95 16 47 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.14 4.07 4.07 -86.92 -0.35 3.72 16 49 H 0.08 2.46 8.08 -2.39 -0.02 2.44 16 Total: -1.00 -76.54 381.39 2.93 -73.61 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.62 Total: 12.23 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 8.30 Total: 22.62 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -7.96 Total: -137.49 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.91 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -76.54 2.93 -73.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036871708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.339 kcal (2) G-P(sol) polarization free energy of solvation -76.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds