Wall clock time and date at job start Wed Apr 1 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99881 * 2 1 4 4 C 1.38504 * 120.00089 * 180.02562 * 2 1 3 5 5 C 1.39606 * 120.04546 * 5.00198 * 4 2 1 6 6 C 1.38289 * 118.02373 * 179.97438 * 5 4 2 7 7 C 1.40072 * 117.99572 * 359.97438 * 6 5 4 8 8 C 1.47850 * 120.09440 * 179.97438 * 7 6 5 9 9 O 1.21557 * 120.00230 * 8.30869 * 8 7 6 10 10 N 1.34779 * 119.99991 * 188.30938 * 8 7 6 11 11 C 1.47140 * 121.01454 * 10.65573 * 10 8 7 12 12 C 1.53044 * 107.69202 * 122.55521 * 11 10 8 13 13 C 1.51150 * 111.10724 * 54.39988 * 12 11 10 14 14 H 1.08998 * 108.45101 * 184.64154 * 13 12 11 15 15 C 1.53985 * 113.17329 * 304.88498 * 13 12 11 16 16 H 1.09004 * 112.71872 * 284.03199 * 15 13 12 17 17 C 1.55511 * 100.61406 * 164.16073 * 15 13 12 18 18 C 1.54496 * 102.19499 * 322.23510 * 17 15 13 19 19 N 1.46464 * 113.23143 * 64.35520 * 13 12 11 20 20 C 1.36936 * 126.05722 * 29.52086 * 19 13 12 21 21 H 1.07999 * 119.99861 * 359.97438 * 20 19 13 22 22 C 1.38812 * 120.00428 * 180.02562 * 20 19 13 23 23 N 1.31618 * 119.99513 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00284 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47264 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47549 * 119.99515 * 24 22 20 27 27 H 1.48505 * 109.46907 * 239.99771 * 24 22 20 28 28 C 1.46526 * 121.01552 * 190.37137 * 10 8 7 29 29 N 1.32751 * 119.80707 * 359.97438 * 7 6 5 30 30 N 1.28363 * 122.10891 * 0.02562 * 29 7 6 31 31 H 1.09003 * 109.46835 * 269.99938 * 1 2 3 32 32 H 1.08997 * 109.47350 * 29.99445 * 1 2 3 33 33 H 1.08997 * 109.46930 * 150.00006 * 1 2 3 34 34 H 1.09000 * 109.47563 * 270.00192 * 3 2 1 35 35 H 1.09005 * 109.47216 * 30.00327 * 3 2 1 36 36 H 1.09002 * 109.47030 * 149.99982 * 3 2 1 37 37 H 1.07989 * 120.98667 * 0.02562 * 5 4 2 38 38 H 1.07997 * 121.00244 * 179.97438 * 6 5 4 39 39 H 1.09004 * 109.81621 * 242.10477 * 11 10 8 40 40 H 1.09000 * 109.81354 * 3.00962 * 11 10 8 41 41 H 1.08995 * 109.15311 * 174.81946 * 12 11 10 42 42 H 1.08998 * 109.15292 * 293.98679 * 12 11 10 43 43 H 1.09002 * 110.53805 * 204.29788 * 17 15 13 44 44 H 1.08999 * 111.42571 * 80.57674 * 17 15 13 45 45 H 1.09001 * 109.90422 * 263.96293 * 18 17 15 46 46 H 1.08999 * 110.05463 * 142.80529 * 18 17 15 47 47 H 0.97004 * 120.00099 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.34544 * 355.83340 * 28 10 8 49 49 H 1.08997 * 109.34845 * 115.37943 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1576 -1.1995 -0.0005 5 6 1.4645 -2.4067 -0.1064 6 6 2.1977 -3.5792 -0.1033 7 6 3.5908 -3.4833 0.0055 8 6 4.4199 -4.7075 0.0142 9 8 3.9131 -5.7864 -0.2238 10 7 5.7375 -4.6271 0.2859 11 6 6.3308 -3.3833 0.8016 12 6 7.0087 -3.7090 2.1345 13 6 7.9942 -4.8447 1.9807 14 1 8.3884 -5.0951 2.9655 15 6 7.3671 -6.1130 1.3729 16 1 6.7545 -6.6635 2.0871 17 6 8.6462 -6.8968 0.9630 18 6 9.5761 -5.7672 0.4668 19 7 9.1201 -4.5178 1.1028 20 6 9.6549 -3.2723 0.9079 21 1 9.2421 -2.4201 1.4272 22 6 10.7269 -3.1050 0.0421 23 7 11.2297 -4.1436 -0.5911 24 14 11.4560 -1.4060 -0.2244 25 1 10.7158 -0.4152 0.5976 26 1 12.8859 -1.4124 0.1762 27 1 11.3455 -1.0394 -1.6592 28 6 6.6219 -5.7776 0.0827 29 7 4.1647 -2.2900 0.1008 30 7 3.4824 -1.2027 0.0976 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5138 34 1 2.3792 1.5835 -1.0276 35 1 1.6084 2.0284 0.5139 36 1 3.1499 1.1384 0.5138 37 1 0.3879 -2.4243 -0.1892 38 1 1.7107 -4.5400 -0.1822 39 1 7.0689 -3.0050 0.0943 40 1 5.5505 -2.6382 0.9563 41 1 7.5353 -2.8248 2.4933 42 1 6.2485 -3.9915 2.8627 43 1 8.4241 -7.5967 0.1574 44 1 9.0866 -7.4139 1.8155 45 1 9.5064 -5.6785 -0.6173 46 1 10.6059 -5.9766 0.7563 47 1 11.9786 -4.0267 -1.1965 48 1 6.0288 -6.6392 -0.2242 49 1 7.3454 -5.5435 -0.6982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036871709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:22 Heat of formation + Delta-G solvation = 94.610432 kcal Electronic energy + Delta-G solvation = -31452.931750 eV Core-core repulsion = 27417.791816 eV Total energy + Delta-G solvation = -4035.139934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.33189 -39.79081 -38.19300 -37.28645 -34.96083 -33.24618 -32.79559 -31.70916 -31.50736 -29.19310 -28.84608 -27.59079 -26.43212 -25.22683 -24.50573 -23.83666 -22.44136 -22.33997 -20.39940 -19.89009 -18.56035 -17.89711 -17.70212 -16.85200 -16.20436 -16.03080 -15.69110 -15.19817 -15.04695 -14.91797 -14.74903 -14.43216 -14.06533 -13.83324 -13.75818 -13.40591 -13.05769 -12.92897 -12.79133 -12.68931 -12.62915 -12.32524 -12.03020 -11.64755 -11.39470 -11.16849 -10.99354 -10.94579 -10.80710 -10.66111 -10.54603 -10.35081 -10.12914 -9.99052 -9.80218 -9.71259 -9.54686 -9.52864 -9.09356 -8.52641 -8.25122 -7.99996 -6.73099 -5.63871 -2.95782 0.59788 0.72173 2.39104 2.82382 3.27705 3.45372 3.51576 3.53326 3.70325 4.02546 4.25542 4.42167 4.48685 4.56668 4.66834 4.81606 4.86422 4.95859 5.14230 5.26326 5.28916 5.36984 5.43375 5.50511 5.54764 5.60894 5.67395 5.69829 5.78464 5.92780 5.99845 6.10065 6.20513 6.24259 6.38964 6.46770 6.54387 6.56331 6.60689 6.72635 6.79833 6.83592 6.92777 7.04925 7.10954 7.65575 7.68225 7.84565 7.89941 8.32530 8.34258 8.62846 9.29139 9.91313 10.58769 11.48488 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.003482 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.679900 B = 8039.807514 C = 9851.526512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.603 5.603 3 C 0.092 3.908 4 C 0.351 3.649 5 C -0.192 4.192 6 C -0.024 4.024 7 C -0.026 4.026 8 C 0.576 3.424 9 O -0.552 6.552 10 N -0.577 5.577 11 C 0.088 3.912 12 C -0.129 4.129 13 C 0.170 3.830 14 H 0.017 0.983 15 C -0.115 4.115 16 H 0.075 0.925 17 C -0.143 4.143 18 C 0.176 3.824 19 N -0.593 5.593 20 C -0.218 4.218 21 H 0.080 0.920 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.906 3.094 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.126 3.874 29 N -0.150 5.150 30 N -0.307 5.307 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.250 0.750 48 H 0.078 0.922 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.768 5.336 2.105 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.317 5.317 3 C -0.051 4.051 4 C 0.111 3.889 5 C -0.224 4.224 6 C -0.053 4.053 7 C -0.176 4.176 8 C 0.361 3.639 9 O -0.431 6.431 10 N -0.306 5.306 11 C -0.034 4.034 12 C -0.168 4.168 13 C 0.062 3.938 14 H 0.034 0.966 15 C -0.135 4.135 16 H 0.093 0.907 17 C -0.182 4.182 18 C 0.051 3.949 19 N -0.319 5.319 20 C -0.347 4.347 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.737 3.263 25 H -0.204 1.204 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.004 3.996 29 N 0.004 4.996 30 N -0.160 5.160 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.169 0.831 38 H 0.177 0.823 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.579 5.942 1.978 22.469 hybrid contribution -0.721 0.139 -0.291 0.789 sum -22.299 6.081 1.687 23.175 Atomic orbital electron populations 1.21825 0.78083 1.03460 1.02028 1.46097 1.05404 1.03067 1.77110 1.21739 0.97987 0.83329 1.02021 1.20142 0.91499 0.86956 0.90306 1.21788 1.01949 0.91124 1.07580 1.22127 0.92823 0.99943 0.90361 1.22598 0.93543 0.94576 1.06877 1.17453 0.81857 0.86542 0.78033 1.90738 1.72245 1.27981 1.52122 1.47928 1.06247 1.14858 1.61560 1.22792 0.99586 0.85302 0.95725 1.21617 0.97973 1.00362 0.96830 1.20288 0.88372 0.91529 0.93635 0.96607 1.22544 0.96218 0.98030 0.96731 0.90664 1.23050 0.96141 0.98687 1.00299 1.21245 0.94561 0.82380 0.96698 1.44338 1.33165 1.04362 1.50043 1.19031 1.10462 0.84160 1.21011 0.90224 1.24753 0.98896 0.97170 0.99653 1.69967 1.27123 1.27586 1.32288 0.86120 0.78803 0.83812 0.77550 1.20444 1.22010 1.21936 1.21504 0.92237 0.87902 0.97938 1.73142 1.28048 0.94591 1.03843 1.73253 1.03454 1.20300 1.18999 0.92391 0.90465 0.90874 0.92743 0.91335 0.89536 0.83114 0.82279 0.89318 0.85904 0.90695 0.93250 0.92069 0.92264 0.93536 0.94007 0.93985 0.90327 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 10.29 59.85 0.62 1.01 16 2 N -0.60 -5.06 3.38 -189.54 -0.64 -5.70 16 3 C 0.09 0.68 10.50 59.85 0.63 1.31 16 4 C 0.35 3.98 7.44 -154.94 -1.15 2.83 16 5 C -0.19 -1.85 9.33 -39.05 -0.36 -2.21 16 6 C -0.02 -0.28 9.71 -38.88 -0.38 -0.66 16 7 C -0.03 -0.40 6.66 -82.85 -0.55 -0.95 16 8 C 0.58 10.24 7.64 -12.33 -0.09 10.15 16 9 O -0.55 -10.61 15.88 5.32 0.08 -10.53 16 10 N -0.58 -10.69 2.94 -174.39 -0.51 -11.20 16 11 C 0.09 1.66 5.83 -3.67 -0.02 1.64 16 12 C -0.13 -2.41 5.18 -27.64 -0.14 -2.55 16 13 C 0.17 3.50 2.89 -68.37 -0.20 3.30 16 14 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 15 C -0.11 -2.12 3.78 -88.91 -0.34 -2.46 16 16 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.14 -2.70 6.32 -24.61 -0.16 -2.86 16 18 C 0.18 4.20 4.62 -2.75 -0.01 4.19 16 19 N -0.59 -14.55 3.08 -164.50 -0.51 -15.06 16 20 C -0.22 -5.85 8.95 -15.06 -0.13 -5.98 16 21 H 0.08 2.07 6.71 -52.49 -0.35 1.72 16 22 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 23 N -0.92 -26.87 10.38 55.49 0.58 -26.29 16 24 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 C 0.13 2.38 5.43 -4.17 -0.02 2.36 16 29 N -0.15 -2.41 7.39 33.32 0.25 -2.17 16 30 N -0.31 -4.45 10.26 31.21 0.32 -4.13 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 33 H 0.07 0.25 6.00 -51.93 -0.31 -0.06 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 36 H 0.09 0.80 7.31 -51.93 -0.38 0.42 16 37 H 0.15 0.89 6.11 -52.49 -0.32 0.56 16 38 H 0.16 1.63 7.73 -52.49 -0.41 1.22 16 39 H 0.09 1.93 7.39 -51.93 -0.38 1.55 16 40 H 0.12 2.19 4.09 -120.30 -0.49 1.70 16 41 H 0.07 1.44 7.05 -51.93 -0.37 1.07 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.05 7.97 -51.93 -0.41 0.64 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 1.23 6.94 -51.93 -0.36 0.87 16 46 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 49 H 0.08 1.72 6.73 -51.93 -0.35 1.37 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -32.82 376.16 -9.61 -42.43 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.40 Total: 1.05 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -2.42 Total: 8.78 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.52 Total: -64.54 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.82 -9.61 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036871709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.040 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds