Wall clock time and date at job start Wed Apr 1 2020 03:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99841 * 2 1 4 4 H 1.48504 * 109.46792 * 239.99951 * 3 2 1 5 5 H 1.48499 * 109.47368 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47303 * 120.00158 * 3 2 1 7 7 C 1.38806 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00354 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64799 * 0.03721 * 9 7 2 11 11 C 1.54325 * 107.27396 * 181.02240 * 10 9 7 12 12 C 1.55165 * 102.94046 * 22.19497 * 11 10 9 13 13 H 1.09004 * 111.03197 * 82.58738 * 12 11 10 14 14 C 1.52998 * 111.00602 * 206.42171 * 12 11 10 15 15 H 1.08998 * 109.69986 * 75.13002 * 14 12 11 16 16 C 1.53190 * 109.58615 * 314.77561 * 14 12 11 17 17 C 1.53038 * 109.31147 * 185.57761 * 16 14 12 18 18 C 1.53048 * 109.54039 * 61.36358 * 17 16 14 19 19 C 1.53626 * 109.23642 * 298.51323 * 18 17 16 20 20 N 1.46923 * 108.54460 * 54.85734 * 19 18 17 21 21 C 1.34777 * 120.63152 * 126.36837 * 20 19 18 22 22 O 1.21279 * 119.99830 * 175.06336 * 21 20 19 23 23 C 1.50701 * 119.99921 * 355.06526 * 21 20 19 24 24 C 1.52998 * 109.47055 * 180.02562 * 23 21 20 25 25 N 1.46505 * 109.46973 * 179.97438 * 24 23 21 26 26 C 1.36343 * 125.63599 * 89.99983 * 25 24 23 27 27 C 1.34847 * 108.21761 * 179.77018 * 26 25 24 28 28 C 1.40885 * 107.41691 * 0.22199 * 27 26 25 29 29 C 1.34852 * 107.42113 * 0.02562 * 28 27 26 30 30 C 1.47432 * 125.64841 * 180.02562 * 9 7 2 31 31 H 0.97000 * 120.00022 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.88533 * 300.44602 * 10 9 7 33 33 H 1.09004 * 109.88169 * 61.45489 * 10 9 7 34 34 H 1.09001 * 110.72375 * 263.83580 * 11 10 9 35 35 H 1.08995 * 110.72198 * 140.55755 * 11 10 9 36 36 H 1.09002 * 109.49730 * 305.52762 * 16 14 12 37 37 H 1.09001 * 109.50148 * 65.62202 * 16 14 12 38 38 H 1.09003 * 109.46051 * 181.38263 * 17 16 14 39 39 H 1.09002 * 109.45902 * 301.34428 * 17 16 14 40 40 H 1.08995 * 109.49415 * 58.58110 * 18 17 16 41 41 H 1.08998 * 109.49630 * 178.65422 * 18 17 16 42 42 H 1.09003 * 109.74025 * 295.11486 * 19 18 17 43 43 H 1.09000 * 109.66105 * 174.54769 * 19 18 17 44 44 H 1.09000 * 109.47637 * 59.99493 * 23 21 20 45 45 H 1.09002 * 109.46758 * 299.99597 * 23 21 20 46 46 H 1.08996 * 109.47230 * 59.99294 * 24 23 21 47 47 H 1.09002 * 109.46656 * 299.99228 * 24 23 21 48 48 H 1.08007 * 125.88799 * 0.02813 * 26 25 24 49 49 H 1.07996 * 126.29213 * 180.22697 * 27 26 25 50 50 H 1.08000 * 126.29297 * 179.97438 * 28 27 26 51 51 H 1.07999 * 125.89550 * 180.02562 * 29 28 27 52 52 H 1.08990 * 110.36589 * 37.06346 * 30 9 7 53 53 H 1.09005 * 110.45691 * 274.78946 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5327 -0.0008 11 6 -0.4485 -4.0441 0.0261 12 6 0.8514 -4.6560 0.6121 13 1 0.8557 -4.5964 1.7005 14 6 1.0368 -6.1008 0.1443 15 1 1.3644 -6.1112 -0.8953 16 6 -0.2896 -6.8564 0.2723 17 6 -0.0658 -8.3325 -0.0640 18 6 0.9323 -8.9374 0.9261 19 6 2.2765 -8.2042 0.8015 20 7 2.0426 -6.7653 0.9843 21 6 2.7414 -6.0669 1.9011 22 8 2.6041 -4.8646 1.9813 23 6 3.6933 -6.7801 2.8264 24 6 4.3525 -5.7644 3.7617 25 7 5.2775 -6.4578 4.6617 26 6 6.5983 -6.6913 4.4174 27 6 7.1134 -7.3477 5.4767 28 6 6.0712 -7.5306 6.4069 29 6 4.9588 -6.9795 5.8804 30 6 1.9335 -3.7312 0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5584 -2.0519 0.8822 33 1 -0.5537 -2.0823 -0.9019 34 1 -0.6307 -4.4183 -0.9813 35 1 -1.2991 -4.2513 0.6753 36 1 -0.6615 -6.7681 1.2931 37 1 -1.0181 -6.4322 -0.4187 38 1 -1.0130 -8.8678 0.0025 39 1 0.3295 -8.4184 -1.0762 40 1 0.5489 -8.8295 1.9407 41 1 1.0730 -9.9945 0.7007 42 1 2.7031 -8.3827 -0.1855 43 1 2.9625 -8.5632 1.5687 44 1 4.4603 -7.2856 2.2397 45 1 3.1447 -7.5142 3.4166 46 1 3.5852 -5.2594 4.3484 47 1 4.9010 -5.0301 3.1718 48 1 7.1398 -6.3972 3.5303 49 1 8.1367 -7.6734 5.5911 50 1 6.1487 -8.0225 7.3652 51 1 3.9847 -6.9515 6.3459 52 1 2.8322 -3.7403 0.6181 53 1 2.1691 -4.0436 -1.0158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039236642.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:53 Heat of formation + Delta-G solvation = 47.902451 kcal Electronic energy + Delta-G solvation = -31735.165848 eV Core-core repulsion = 27801.540847 eV Total energy + Delta-G solvation = -3933.625001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.12388 -41.66058 -38.92190 -38.26923 -35.34292 -34.61002 -33.80630 -32.66155 -30.82473 -30.28231 -29.61984 -28.96023 -26.79041 -25.90372 -24.97601 -23.79295 -22.28928 -21.36402 -21.31646 -21.10169 -20.73570 -20.07851 -19.01326 -18.38734 -17.37217 -17.18590 -16.65174 -16.61658 -16.24955 -15.63937 -15.46832 -15.34588 -15.02706 -14.89170 -14.63861 -14.36012 -14.28790 -14.08555 -13.89996 -13.76298 -13.64789 -13.45600 -13.22857 -13.12159 -12.98063 -12.86513 -12.80429 -12.71289 -12.31434 -12.27850 -12.12721 -12.00359 -11.82095 -11.69297 -11.49636 -11.40174 -11.33636 -11.06504 -10.71266 -10.05017 -9.50950 -9.44891 -9.03446 -8.80698 -7.83983 -5.17725 1.38961 1.40104 1.45067 1.51290 1.66865 1.82705 2.18905 2.27306 2.49093 3.31907 3.49360 3.69829 3.74402 3.78492 3.83734 3.93656 4.03920 4.13428 4.20348 4.25309 4.27082 4.35402 4.39026 4.42150 4.46862 4.48977 4.60242 4.63404 4.75484 4.77130 4.81355 4.82605 4.84777 4.95248 5.01379 5.02174 5.10707 5.15005 5.22095 5.29712 5.32539 5.42205 5.43578 5.46745 5.51108 5.60555 5.69958 5.73590 5.85227 6.13835 6.22034 6.38207 6.50688 6.51506 7.12092 7.33721 7.82420 8.48291 9.26615 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008268 B = 0.003598 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.714470 B = 7779.889429 C =10679.258622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.627 5.627 10 C 0.187 3.813 11 C -0.129 4.129 12 C -0.071 4.071 13 H 0.082 0.918 14 C 0.165 3.835 15 H 0.067 0.933 16 C -0.124 4.124 17 C -0.117 4.117 18 C -0.129 4.129 19 C 0.101 3.899 20 N -0.606 5.606 21 C 0.495 3.505 22 O -0.548 6.548 23 C -0.135 4.135 24 C 0.124 3.876 25 N -0.449 5.449 26 C -0.027 4.027 27 C -0.219 4.219 28 C -0.219 4.219 29 C -0.026 4.026 30 C 0.148 3.852 31 H 0.246 0.754 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.173 0.827 49 H 0.145 0.855 50 H 0.145 0.855 51 H 0.175 0.825 52 H 0.057 0.943 53 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 -26.698 5.752 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.062 3.938 11 C -0.168 4.168 12 C -0.090 4.090 13 H 0.100 0.900 14 C 0.061 3.939 15 H 0.085 0.915 16 C -0.162 4.162 17 C -0.155 4.155 18 C -0.167 4.167 19 C -0.020 4.020 20 N -0.339 5.339 21 C 0.284 3.716 22 O -0.427 6.427 23 C -0.176 4.176 24 C 0.002 3.998 25 N -0.124 5.124 26 C -0.156 4.156 27 C -0.243 4.243 28 C -0.244 4.244 29 C -0.155 4.155 30 C 0.024 3.976 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.190 0.810 49 H 0.163 0.837 50 H 0.163 0.837 51 H 0.192 0.808 52 H 0.075 0.925 53 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 5.553 -25.689 5.556 26.863 hybrid contribution 0.199 1.660 -0.128 1.676 sum 5.752 -24.029 5.428 25.297 Atomic orbital electron populations 1.70210 1.06263 1.25122 1.58779 1.25665 0.96701 1.00991 1.02992 0.85140 0.77175 0.78789 0.78186 1.20158 1.21606 1.20550 1.19393 0.90697 0.84219 1.42480 0.90909 1.44812 1.02484 1.01432 1.86536 1.20853 0.83931 0.92174 0.96855 1.22892 0.98011 0.95136 1.00748 1.22477 0.93479 0.92514 1.00529 0.89962 1.21109 0.88918 0.90292 0.93540 0.91538 1.21949 0.95441 0.96484 1.02372 1.21537 1.00364 0.93823 0.99743 1.21982 0.94325 1.00497 0.99945 1.22144 0.98671 0.77572 1.03633 1.48167 1.38324 1.10542 1.36853 1.20923 0.81662 0.87348 0.81655 1.90897 1.65531 1.15675 1.70574 1.21914 0.99050 0.99144 0.97467 1.21457 0.92686 0.93774 0.91913 1.44289 1.08799 1.43939 1.15398 1.22218 0.84257 1.06645 1.02527 1.21175 1.00226 1.07279 0.95657 1.21177 0.93189 1.08228 1.01760 1.22224 1.01214 1.04323 0.87757 1.22066 0.96851 0.84073 0.94612 0.94527 0.98122 0.98015 0.91060 0.90677 0.92194 0.90488 0.90403 0.91247 0.91785 0.88303 0.90197 0.87750 0.86716 0.86546 0.89503 0.89695 0.80970 0.83747 0.83699 0.80818 0.92489 0.98881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.65 10.31 21.65 0.22 -61.43 16 2 C -0.07 -4.40 5.49 84.86 0.47 -3.93 16 3 Si 0.98 49.18 29.55 68.60 2.03 51.21 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 7 C -0.24 -14.83 10.28 84.03 0.86 -13.96 16 8 H 0.07 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -36.17 3.40 -692.03 -2.35 -38.52 16 10 C 0.19 10.23 5.38 86.73 0.47 10.70 16 11 C -0.13 -5.11 5.03 31.79 0.16 -4.95 16 12 C -0.07 -2.64 1.96 -9.41 -0.02 -2.66 16 13 H 0.08 3.46 5.89 -3.85 -0.02 3.44 16 14 C 0.16 4.30 2.66 44.97 0.12 4.42 16 15 H 0.07 1.79 7.75 -2.39 -0.02 1.78 16 16 C -0.12 -2.49 4.74 30.67 0.15 -2.35 16 17 C -0.12 -1.52 5.88 30.62 0.18 -1.34 16 18 C -0.13 -1.28 6.10 30.82 0.19 -1.10 16 19 C 0.10 1.19 6.38 86.51 0.55 1.74 16 20 N -0.61 -12.80 2.97 -794.21 -2.36 -15.16 16 21 C 0.50 12.32 7.45 87.66 0.65 12.97 16 22 O -0.55 -19.74 8.98 -3.03 -0.03 -19.76 16 23 C -0.14 -2.23 4.37 29.85 0.13 -2.10 16 24 C 0.12 2.56 5.38 86.38 0.46 3.03 16 25 N -0.45 -9.02 2.75 -524.47 -1.44 -10.46 16 26 C -0.03 -0.53 11.43 83.21 0.95 0.42 16 27 C -0.22 -4.31 10.86 22.14 0.24 -4.07 16 28 C -0.22 -4.28 10.86 22.14 0.24 -4.04 16 29 C -0.03 -0.49 11.43 83.21 0.95 0.46 16 30 C 0.15 6.96 6.03 86.85 0.52 7.49 16 31 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.00 0.03 7.38 -2.39 -0.02 0.01 16 33 H 0.00 0.10 7.50 -2.38 -0.02 0.08 16 34 H 0.07 2.53 7.51 -2.39 -0.02 2.51 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.59 6.90 -2.39 -0.02 1.57 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 41 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 0.80 5.93 -2.39 -0.01 0.78 16 44 H 0.11 1.47 7.74 -2.39 -0.02 1.46 16 45 H 0.12 1.47 7.89 -2.39 -0.02 1.45 16 46 H 0.09 2.01 8.10 -2.39 -0.02 1.99 16 47 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 48 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 49 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 50 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 51 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 52 H 0.06 2.83 5.52 -5.36 -0.03 2.80 16 53 H -0.01 -0.30 7.77 -2.38 -0.02 -0.32 16 Total: -1.00 -80.75 400.34 4.20 -76.54 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.85 Total: 16.85 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 7.28 Total: 0.73 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -5.92 Total: -125.57 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.03 Total: -19.76 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.03 Total: 51.21 kcal Total: -80.75 4.20 -76.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039236642.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.447 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds