Wall clock time and date at job start Wed Apr 1 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46508 * 120.00262 * 2 1 4 4 C 1.38505 * 120.00058 * 180.02562 * 2 1 3 5 5 C 1.39597 * 120.04751 * 4.99964 * 4 2 1 6 6 C 1.38293 * 118.02871 * 180.02562 * 5 4 2 7 7 C 1.40065 * 117.99298 * 359.97438 * 6 5 4 8 8 C 1.47854 * 120.09564 * 180.02562 * 7 6 5 9 9 O 1.21558 * 120.00062 * 8.24551 * 8 7 6 10 10 N 1.34770 * 120.00220 * 188.24740 * 8 7 6 11 11 C 1.46949 * 120.44509 * 7.94727 * 10 8 7 12 12 C 1.53596 * 108.53286 * 125.75386 * 11 10 8 13 13 H 1.09001 * 110.59885 * 172.16564 * 12 11 10 14 14 C 1.53373 * 108.68701 * 294.36235 * 12 11 10 15 15 C 1.53015 * 109.26985 * 60.29302 * 14 12 11 16 16 C 1.53005 * 109.79479 * 60.56877 * 15 14 12 17 17 C 1.53370 * 109.25861 * 299.41910 * 16 15 14 18 18 H 1.09004 * 111.08697 * 177.82752 * 17 16 15 19 19 C 1.46946 * 120.44612 * 187.67344 * 10 8 7 20 20 N 1.47566 * 107.76693 * 51.14496 * 12 11 10 21 21 C 1.36939 * 121.60759 * 120.50337 * 20 12 11 22 22 H 1.08002 * 120.00251 * 204.61327 * 21 20 12 23 23 C 1.38809 * 120.00098 * 24.62039 * 21 20 12 24 24 N 1.31620 * 120.00368 * 22.69814 * 23 21 20 25 25 Si 1.86800 * 120.00087 * 202.70476 * 23 21 20 26 26 H 1.48504 * 109.47247 * 59.99320 * 25 23 21 27 27 H 1.48494 * 109.47144 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46674 * 299.99609 * 25 23 21 29 29 N 1.32762 * 119.81085 * 0.02562 * 7 6 5 30 30 N 1.28357 * 122.10097 * 359.70369 * 29 7 6 31 31 H 1.09000 * 109.47133 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46947 * 240.00106 * 1 2 3 33 33 H 1.08998 * 109.47316 * 120.00269 * 1 2 3 34 34 H 1.09000 * 109.46956 * 89.99480 * 3 2 1 35 35 H 1.08995 * 109.47379 * 210.00373 * 3 2 1 36 36 H 1.09000 * 109.46535 * 330.00322 * 3 2 1 37 37 H 1.08004 * 120.98477 * 359.97438 * 5 4 2 38 38 H 1.08000 * 121.00308 * 180.02562 * 6 5 4 39 39 H 1.08995 * 109.62799 * 245.47054 * 11 10 8 40 40 H 1.09001 * 109.62007 * 6.04535 * 11 10 8 41 41 H 1.08993 * 109.50852 * 180.22901 * 14 12 11 42 42 H 1.09003 * 109.50706 * 300.35764 * 14 12 11 43 43 H 1.09001 * 109.41616 * 300.47113 * 15 14 12 44 44 H 1.08998 * 109.36382 * 180.63785 * 15 14 12 45 45 H 1.09004 * 109.50763 * 179.49007 * 16 15 14 46 46 H 1.08997 * 109.54249 * 59.37956 * 16 15 14 47 47 H 1.09008 * 109.62486 * 353.95314 * 19 10 8 48 48 H 1.09006 * 109.62663 * 114.51579 * 19 10 8 49 49 H 0.96994 * 120.00188 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1575 -1.1995 -0.0005 5 6 1.4645 -2.4067 -0.1064 6 6 2.1975 -3.5793 -0.1021 7 6 3.5906 -3.4834 0.0076 8 6 4.4196 -4.7076 0.0163 9 8 3.9128 -5.7866 -0.2213 10 7 5.7373 -4.6273 0.2877 11 6 6.3274 -3.3617 0.7456 12 6 7.0753 -3.6199 2.0621 13 1 7.6411 -2.7375 2.3610 14 6 6.0551 -4.0119 3.1381 15 6 5.3242 -5.2834 2.7017 16 6 6.3283 -6.4250 2.5296 17 6 7.3492 -6.0425 1.4509 18 1 8.1029 -6.8208 1.3307 19 6 6.6021 -5.8055 0.1356 20 7 7.9775 -4.7681 1.8497 21 6 9.3323 -4.6566 2.0152 22 1 9.9969 -5.3333 1.4986 23 6 9.8514 -3.6740 2.8468 24 7 9.1047 -3.1552 3.7985 25 14 11.6098 -3.0876 2.6154 26 1 11.7678 -2.5231 1.2509 27 1 11.9192 -2.0411 3.6224 28 1 12.5400 -4.2322 2.7884 29 7 4.1645 -2.2901 0.1038 30 7 3.4827 -1.2026 0.0946 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 0.8900 33 1 -0.3634 -0.5139 -0.8899 34 1 2.3791 1.5834 1.0277 35 1 3.1499 1.1385 -0.5139 36 1 1.6084 2.0284 -0.5138 37 1 0.3877 -2.4243 -0.1883 38 1 1.7106 -4.5400 -0.1819 39 1 7.0249 -2.9903 -0.0051 40 1 5.5380 -2.6284 0.9106 41 1 6.5718 -4.1944 4.0803 42 1 5.3346 -3.2043 3.2680 43 1 4.8158 -5.1021 1.7547 44 1 4.5908 -5.5570 3.4602 45 1 5.8017 -7.3304 2.2276 46 1 6.8446 -6.6018 3.4731 47 1 5.9933 -6.6785 -0.1002 48 1 7.3216 -5.6307 -0.6643 49 1 9.4673 -2.4683 4.3794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039975176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:28 Heat of formation + Delta-G solvation = 98.297218 kcal Electronic energy + Delta-G solvation = -32401.724070 eV Core-core repulsion = 28366.744007 eV Total energy + Delta-G solvation = -4034.980063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.62350 -41.48349 -39.24955 -38.06789 -35.64545 -34.60586 -34.14048 -33.63798 -32.41094 -32.12890 -29.33741 -28.73203 -27.40208 -26.74451 -25.80563 -25.10357 -23.61076 -23.06043 -22.76420 -21.51273 -20.03873 -19.36329 -18.58339 -18.32373 -17.61272 -17.15596 -16.91724 -16.45501 -16.27553 -15.78488 -15.57734 -15.44384 -15.30856 -15.18847 -15.04310 -14.62495 -14.49856 -14.39887 -14.00355 -13.70318 -13.61879 -13.45987 -13.25089 -13.11226 -13.09169 -12.85715 -12.71822 -12.48718 -12.23395 -12.10036 -11.86102 -11.71239 -11.65403 -11.57755 -11.32525 -11.26054 -11.07246 -10.86059 -10.44730 -10.27607 -9.47955 -8.91645 -8.47698 -7.79625 -5.19499 -0.38049 -0.14597 1.49595 1.53119 1.58844 1.64156 1.73327 1.99624 2.55401 2.65477 2.98121 3.31880 3.44838 3.55189 3.59537 3.70141 3.92632 4.11484 4.16328 4.21363 4.25049 4.30989 4.43737 4.45108 4.51034 4.52580 4.62130 4.73407 4.76262 4.77113 4.83727 4.87954 4.88858 4.90913 4.93344 5.00935 5.02672 5.10155 5.20147 5.32646 5.34855 5.45640 5.59512 5.69547 5.76613 5.82094 5.96943 6.02938 6.41253 6.43434 6.99928 7.17822 7.65504 7.87335 8.46008 9.23960 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003707 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.473071 B = 7552.146274 C = 8834.969257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.597 5.597 3 C 0.089 3.911 4 C 0.343 3.657 5 C -0.165 4.165 6 C -0.029 4.029 7 C -0.051 4.051 8 C 0.578 3.422 9 O -0.566 6.566 10 N -0.572 5.572 11 C 0.073 3.927 12 C 0.176 3.824 13 H 0.080 0.920 14 C -0.101 4.101 15 C -0.134 4.134 16 C -0.114 4.114 17 C 0.147 3.853 18 H 0.082 0.918 19 C 0.106 3.894 20 N -0.595 5.595 21 C -0.258 4.258 22 H 0.068 0.932 23 C -0.044 4.044 24 N -0.919 5.919 25 Si 0.959 3.041 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.280 1.280 29 N -0.177 5.177 30 N -0.337 5.337 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.194 0.806 38 H 0.176 0.824 39 H 0.049 0.951 40 H 0.142 0.858 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.087 0.913 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.095 0.905 48 H 0.067 0.933 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.738 6.366 -9.099 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.309 5.309 3 C -0.053 4.053 4 C 0.101 3.899 5 C -0.198 4.198 6 C -0.057 4.057 7 C -0.202 4.202 8 C 0.367 3.633 9 O -0.446 6.446 10 N -0.302 5.302 11 C -0.051 4.051 12 C 0.069 3.931 13 H 0.098 0.902 14 C -0.140 4.140 15 C -0.172 4.172 16 C -0.154 4.154 17 C 0.040 3.960 18 H 0.100 0.900 19 C -0.018 4.018 20 N -0.317 5.317 21 C -0.388 4.388 22 H 0.085 0.915 23 C -0.240 4.240 24 N -0.565 5.565 25 Si 0.788 3.212 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.206 1.206 29 N -0.022 5.022 30 N -0.191 5.191 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.211 0.789 38 H 0.193 0.807 39 H 0.067 0.933 40 H 0.158 0.842 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.114 0.886 48 H 0.086 0.914 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -20.679 7.003 -8.987 23.610 hybrid contribution 0.396 -0.407 0.462 0.732 sum -20.283 6.596 -8.526 22.969 Atomic orbital electron populations 1.22149 0.75255 1.05641 1.03009 1.46514 1.07049 1.02241 1.75076 1.21847 0.97567 0.83693 1.02231 1.20446 0.90847 0.88844 0.89745 1.22137 1.03640 0.89361 1.04689 1.22306 0.91383 1.01585 0.90396 1.22441 0.94882 0.93588 1.09287 1.17550 0.81731 0.87400 0.76649 1.90725 1.72397 1.28628 1.52879 1.48028 1.06931 1.12800 1.62422 1.23502 0.99703 0.85513 0.96406 1.21062 0.89194 0.91972 0.90878 0.90201 1.21623 0.96852 0.96218 0.99327 1.22081 0.97595 0.95473 1.02080 1.21833 0.97090 0.97548 0.98884 1.21291 0.93503 0.89141 0.92062 0.90008 1.22104 0.93057 0.88191 0.98435 1.44693 1.02418 1.04979 1.79561 1.19393 0.82853 1.15961 1.20579 0.91464 1.25541 1.00790 1.02304 0.95396 1.70188 1.37957 1.30339 1.18014 0.85475 0.81166 0.77668 0.76904 1.20893 1.22308 1.20563 1.72854 1.29234 0.95165 1.04984 1.73129 1.05503 1.19769 1.20667 0.87500 0.91107 0.90412 0.92811 0.92074 0.88017 0.78869 0.80693 0.93255 0.84183 0.94653 0.94414 0.89521 0.94347 0.91523 0.94686 0.88644 0.91429 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 9.42 127.77 1.20 1.63 16 2 N -0.60 -8.79 3.38 -753.60 -2.54 -11.34 16 3 C 0.09 1.20 10.39 127.77 1.33 2.53 16 4 C 0.34 7.49 7.44 133.21 0.99 8.48 16 5 C -0.17 -2.88 9.40 22.61 0.21 -2.67 16 6 C -0.03 -0.66 9.71 22.73 0.22 -0.44 16 7 C -0.05 -1.62 6.67 41.99 0.28 -1.34 16 8 C 0.58 21.01 5.04 86.79 0.44 21.45 16 9 O -0.57 -21.51 15.71 -3.90 -0.06 -21.57 16 10 N -0.57 -22.12 1.66 -821.54 -1.36 -23.49 16 11 C 0.07 3.08 5.37 86.49 0.46 3.54 16 12 C 0.18 8.55 2.71 45.11 0.12 8.67 16 13 H 0.08 4.47 5.80 -2.39 -0.01 4.46 16 14 C -0.10 -4.69 5.58 30.72 0.17 -4.52 16 15 C -0.13 -5.56 5.55 30.60 0.17 -5.39 16 16 C -0.11 -4.70 5.57 30.72 0.17 -4.53 16 17 C 0.15 6.25 3.62 44.95 0.16 6.41 16 18 H 0.08 3.36 8.01 -2.39 -0.02 3.34 16 19 C 0.11 4.01 5.85 86.33 0.51 4.52 16 20 N -0.59 -29.80 2.55 -646.52 -1.65 -31.44 16 21 C -0.26 -14.14 9.70 84.03 0.82 -13.32 16 22 H 0.07 3.60 7.93 -2.91 -0.02 3.58 16 23 C -0.04 -2.46 4.90 84.86 0.42 -2.04 16 24 N -0.92 -53.76 11.24 21.65 0.24 -53.52 16 25 Si 0.96 45.30 29.61 68.60 2.03 47.33 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 27 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 29 N -0.18 -5.96 7.28 -48.51 -0.35 -6.32 16 30 N -0.34 -10.07 10.34 -55.17 -0.57 -10.65 16 31 H 0.11 0.11 7.79 -2.39 -0.02 0.09 16 32 H 0.07 0.30 8.12 -2.39 -0.02 0.29 16 33 H 0.08 0.21 7.76 -2.39 -0.02 0.19 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 1.11 7.45 -2.39 -0.02 1.10 16 36 H 0.10 0.68 7.92 -2.39 -0.02 0.66 16 37 H 0.19 1.53 6.81 -2.91 -0.02 1.51 16 38 H 0.18 3.39 7.73 -2.91 -0.02 3.37 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.14 5.72 3.94 -118.34 -0.47 5.26 16 41 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.09 3.47 2.44 -3.40 -0.01 3.47 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.10 3.38 6.98 -2.38 -0.02 3.36 16 48 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 49 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -71.61 372.14 3.92 -67.69 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.51 Total: 20.33 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 7.67 Total: 22.96 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -6.23 Total: -136.75 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.06 Total: -21.57 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.61 3.92 -67.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039975176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.991 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds