Wall clock time and date at job start Wed Apr 1 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46508 * 119.99736 * 2 1 4 4 C 1.38403 * 120.00355 * 179.97438 * 2 1 3 5 5 C 1.39898 * 119.99613 * 5.00559 * 4 2 1 6 6 N 1.31451 * 120.01332 * 179.97438 * 5 4 2 7 7 C 1.33281 * 120.00696 * 359.97438 * 6 5 4 8 8 C 1.47824 * 119.99648 * 180.02562 * 7 6 5 9 9 O 1.21556 * 119.99571 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00309 * 359.97438 * 8 7 6 11 11 C 1.48273 * 127.72227 * 359.97438 * 10 8 7 12 12 C 1.54746 * 104.67486 * 141.28279 * 11 10 8 13 13 C 1.52878 * 104.41284 * 23.63511 * 12 11 10 14 14 C 1.53702 * 111.75147 * 237.42916 * 13 12 11 15 15 C 1.54584 * 102.94906 * 273.44084 * 14 13 12 16 16 N 1.47137 * 107.33067 * 339.03854 * 15 14 13 17 17 C 1.36938 * 125.60519 * 179.08826 * 16 15 14 18 18 H 1.07995 * 119.99830 * 174.74755 * 17 16 15 19 19 C 1.38813 * 120.00009 * 354.74352 * 17 16 15 20 20 N 1.31617 * 120.00079 * 7.05072 * 19 17 16 21 21 Si 1.86802 * 119.99845 * 187.05403 * 19 17 16 22 22 H 1.48501 * 109.47053 * 94.98608 * 21 19 17 23 23 H 1.48495 * 109.46886 * 214.98627 * 21 19 17 24 24 H 1.48503 * 109.47010 * 334.98594 * 21 19 17 25 25 C 1.47700 * 108.78612 * 359.06605 * 16 15 14 26 26 C 1.48489 * 127.72282 * 179.97438 * 10 8 7 27 27 C 1.39402 * 119.99932 * 0.27285 * 7 6 5 28 28 N 1.32049 * 119.98373 * 359.45860 * 27 7 6 29 29 H 1.09005 * 109.46621 * 269.99788 * 1 2 3 30 30 H 1.08997 * 109.47353 * 29.99630 * 1 2 3 31 31 H 1.09000 * 109.46674 * 150.00284 * 1 2 3 32 32 H 1.09000 * 109.46950 * 270.00246 * 3 2 1 33 33 H 1.08998 * 109.47276 * 30.00079 * 3 2 1 34 34 H 1.08994 * 109.46671 * 150.00267 * 3 2 1 35 35 H 1.08005 * 119.99226 * 359.96908 * 5 4 2 36 36 H 1.09005 * 110.39687 * 22.48264 * 11 10 8 37 37 H 1.09001 * 110.49229 * 260.13440 * 11 10 8 38 38 H 1.08998 * 110.44922 * 264.90204 * 12 11 10 39 39 H 1.09004 * 110.55368 * 142.42054 * 12 11 10 40 40 H 1.09002 * 110.75136 * 155.02623 * 14 13 12 41 41 H 1.09003 * 110.75036 * 31.85761 * 14 13 12 42 42 H 1.09002 * 109.86944 * 98.47170 * 15 14 13 43 43 H 1.09002 * 109.87588 * 219.45432 * 15 14 13 44 44 H 0.96998 * 120.00138 * 180.02562 * 20 19 17 45 45 H 1.09002 * 110.39379 * 141.39564 * 25 16 15 46 46 H 1.09008 * 110.38829 * 263.78032 * 25 16 15 47 47 H 1.08996 * 110.47138 * 99.56607 * 26 10 8 48 48 H 1.09003 * 110.47224 * 336.96400 * 26 10 8 49 49 H 1.08003 * 120.00791 * 179.72379 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1571 -1.1986 0.0005 5 6 1.4616 -2.4078 -0.1046 6 7 2.1186 -3.5464 -0.1047 7 6 3.4477 -3.5490 -0.0050 8 6 4.1864 -4.8294 -0.0056 9 8 5.3985 -4.8318 0.0857 10 7 3.5159 -5.9942 -0.1065 11 6 2.0509 -6.1904 -0.2239 12 6 1.8909 -7.3581 -1.2267 13 6 3.2162 -8.1156 -1.1434 14 6 3.9067 -8.2078 -2.5135 15 6 3.2737 -9.4733 -3.1359 16 7 2.7300 -10.2797 -2.0318 17 6 2.0707 -11.4725 -2.1652 18 1 1.7830 -12.0316 -1.2871 19 6 1.7722 -11.9630 -3.4290 20 7 2.2417 -11.3560 -4.4983 21 14 0.7042 -13.4846 -3.6120 22 1 -0.7075 -13.0758 -3.8249 23 1 1.1703 -14.2794 -4.7766 24 1 0.8007 -14.3082 -2.3801 25 6 3.0126 -9.5914 -0.7559 26 6 4.0791 -7.3680 -0.1248 27 6 4.1408 -2.3444 0.1050 28 7 3.4810 -1.2006 0.0997 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3791 1.5835 -1.0277 33 1 1.6084 2.0285 0.5138 34 1 3.1499 1.1385 0.5138 35 1 0.3846 -2.4060 -0.1857 36 1 1.5767 -5.2888 -0.6118 37 1 1.6231 -6.4581 0.7423 38 1 1.7340 -6.9752 -2.2351 39 1 1.0638 -8.0044 -0.9328 40 1 4.9832 -8.3324 -2.3959 41 1 3.6850 -7.3280 -3.1177 42 1 2.4717 -9.1896 -3.8174 43 1 4.0329 -10.0414 -3.6735 44 1 2.0328 -11.6985 -5.3814 45 1 2.1674 -9.6915 -0.0749 46 1 3.9181 -9.9926 -0.3004 47 1 3.9926 -7.8286 0.8593 48 1 5.1200 -7.3491 -0.4477 49 1 5.2174 -2.3466 0.1903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041288464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:49 Heat of formation + Delta-G solvation = 57.783402 kcal Electronic energy + Delta-G solvation = -30379.387868 eV Core-core repulsion = 26342.650994 eV Total energy + Delta-G solvation = -4036.736874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.33583 -41.16987 -39.62818 -37.93390 -37.19379 -35.28201 -34.35538 -32.30045 -31.58646 -30.74634 -29.89884 -29.35425 -27.81128 -26.91661 -25.53386 -25.14206 -23.90720 -23.22745 -22.10619 -21.11588 -20.17774 -19.05239 -18.78344 -18.50965 -17.78449 -17.10702 -16.92576 -16.71047 -16.50399 -15.99413 -15.78993 -15.65480 -15.42346 -15.41350 -14.96725 -14.68542 -14.27967 -14.16633 -13.93357 -13.86186 -13.47192 -13.39469 -13.14749 -13.13567 -12.96980 -12.89916 -12.74393 -12.64728 -12.42768 -12.36839 -12.04582 -11.99183 -11.82288 -11.52655 -11.40050 -11.26824 -11.18797 -11.13277 -10.65252 -10.06314 -9.72349 -8.85385 -8.77490 -7.82492 -5.16510 -0.44118 0.07940 1.47890 1.49643 1.58592 1.67952 1.71177 1.91658 2.52367 2.78654 3.00359 3.22772 3.34966 3.37081 3.48326 3.66975 3.71631 3.84478 3.92452 4.03011 4.23911 4.33754 4.34380 4.39634 4.43119 4.50215 4.56737 4.61792 4.67923 4.75095 4.77282 4.87133 4.91203 4.92612 4.94746 5.00094 5.02014 5.09845 5.22511 5.23919 5.43680 5.50042 5.50657 5.65375 5.67716 5.78780 5.95938 6.21777 6.30407 6.51095 6.74237 7.05585 7.12698 7.80490 8.46713 9.28727 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.002244 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.320397 B =12472.064735 C =13240.512495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.087 3.913 4 C 0.369 3.631 5 C 0.001 3.999 6 N -0.378 5.378 7 C -0.069 4.069 8 C 0.596 3.404 9 O -0.579 6.579 10 N -0.604 5.604 11 C 0.102 3.898 12 C -0.107 4.107 13 C -0.074 4.074 14 C -0.118 4.118 15 C 0.192 3.808 16 N -0.623 5.623 17 C -0.236 4.236 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.952 5.952 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.266 1.266 25 C 0.149 3.851 26 C 0.127 3.873 27 C 0.173 3.827 28 N -0.525 5.525 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.207 0.793 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.013 0.987 43 H -0.001 1.001 44 H 0.245 0.755 45 H 0.055 0.945 46 H 0.025 0.975 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 27.902 12.079 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C -0.056 4.056 4 C 0.126 3.874 5 C -0.174 4.174 6 N -0.093 5.093 7 C -0.207 4.207 8 C 0.386 3.614 9 O -0.459 6.459 10 N -0.334 5.334 11 C -0.020 4.020 12 C -0.145 4.145 13 C -0.076 4.076 14 C -0.156 4.156 15 C 0.067 3.933 16 N -0.349 5.349 17 C -0.365 4.365 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.191 1.191 25 C 0.024 3.976 26 C 0.005 3.995 27 C 0.011 3.989 28 N -0.248 5.248 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.223 0.777 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.031 0.969 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.597 28.028 12.002 30.999 hybrid contribution -0.073 -1.226 -0.770 1.450 sum -5.670 26.802 11.232 29.609 Atomic orbital electron populations 1.22218 0.75182 1.05409 1.03667 1.46649 1.07219 1.02503 1.73729 1.21848 0.97788 0.83568 1.02354 1.19957 0.89585 0.88911 0.88903 1.23873 1.02874 0.85872 1.04756 1.68180 1.07177 1.29030 1.04960 1.21244 0.91286 0.94359 1.13829 1.17407 0.85626 0.82246 0.76160 1.90754 1.14226 1.87114 1.53837 1.48897 1.09819 1.04827 1.69899 1.23050 0.79223 1.00079 0.99615 1.22283 0.96122 0.96401 0.99717 1.21577 0.96138 0.95027 0.94827 1.22659 0.99041 0.97813 0.96083 1.20871 0.94315 0.88724 0.89388 1.44811 1.66189 1.21909 1.02033 1.19468 1.27872 0.96399 0.92794 0.89671 1.25674 1.02480 1.02706 0.95289 1.70216 1.49418 1.43301 0.97237 0.85069 0.78399 0.78767 0.77179 1.21311 1.22586 1.19098 1.21619 0.98109 0.89486 0.88432 1.22120 0.97683 0.80438 0.99291 1.23444 1.01733 0.85817 0.87859 1.68159 1.07279 1.28899 1.20466 0.90773 0.88215 0.89467 0.92406 0.88482 0.91445 0.77698 0.85874 0.89907 0.92164 0.90278 0.91950 0.91521 0.96857 0.98314 0.94561 0.92700 0.95762 0.89189 0.90833 0.80197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.16 10.28 127.77 1.31 1.48 16 2 N -0.59 -5.84 3.37 -753.46 -2.54 -8.38 16 3 C 0.09 0.67 10.50 127.77 1.34 2.01 16 4 C 0.37 6.08 7.37 133.35 0.98 7.06 16 5 C 0.00 0.01 10.42 85.15 0.89 0.90 16 6 N -0.38 -8.25 6.76 -183.78 -1.24 -9.49 16 7 C -0.07 -1.78 6.72 41.74 0.28 -1.50 16 8 C 0.60 18.58 7.89 86.78 0.69 19.26 16 9 O -0.58 -21.09 16.61 -3.89 -0.06 -21.15 16 10 N -0.60 -17.76 3.33 -812.12 -2.71 -20.47 16 11 C 0.10 2.59 6.54 86.63 0.57 3.15 16 12 C -0.11 -3.30 6.28 31.15 0.20 -3.10 16 13 C -0.07 -2.55 0.82 -51.67 -0.04 -2.59 16 14 C -0.12 -4.68 5.83 31.37 0.18 -4.50 16 15 C 0.19 9.85 5.34 86.80 0.46 10.32 16 16 N -0.62 -32.17 3.41 -692.38 -2.36 -34.53 16 17 C -0.24 -13.26 10.27 84.03 0.86 -12.40 16 18 H 0.09 4.53 7.84 -2.91 -0.02 4.50 16 19 C -0.07 -3.96 5.48 84.86 0.46 -3.49 16 20 N -0.95 -58.47 10.35 21.65 0.22 -58.25 16 21 Si 0.98 46.11 29.56 68.60 2.03 48.14 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 C 0.15 5.96 6.07 86.47 0.52 6.49 16 26 C 0.13 3.89 6.19 85.99 0.53 4.42 16 27 C 0.17 4.05 10.76 84.94 0.91 4.97 16 28 N -0.52 -10.98 9.22 -191.74 -1.77 -12.74 16 29 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.10 -0.13 8.07 -2.39 -0.02 -0.15 16 31 H 0.09 0.05 5.98 -2.39 -0.01 0.04 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.10 0.23 8.07 -2.39 -0.02 0.21 16 34 H 0.07 0.78 7.30 -2.39 -0.02 0.76 16 35 H 0.21 1.58 6.03 -2.91 -0.02 1.56 16 36 H 0.12 2.93 5.18 -2.38 -0.01 2.92 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.99 7.51 -2.39 -0.02 1.97 16 39 H 0.08 2.50 7.55 -2.38 -0.02 2.49 16 40 H 0.06 2.40 7.73 -2.39 -0.02 2.38 16 41 H 0.07 2.53 7.71 -2.39 -0.02 2.51 16 42 H 0.01 0.76 7.30 -2.39 -0.02 0.74 16 43 H 0.00 -0.08 7.60 -2.39 -0.02 -0.10 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.05 2.06 7.76 -2.39 -0.02 2.04 16 46 H 0.02 0.97 8.06 -2.38 -0.02 0.95 16 47 H 0.09 2.45 7.95 -2.39 -0.02 2.43 16 48 H 0.07 2.41 7.36 -2.39 -0.02 2.39 16 49 H 0.18 4.02 7.63 -2.91 -0.02 4.00 16 Total: -1.00 -76.52 386.06 2.69 -73.83 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.96 Total: 10.57 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 10.16 Total: 32.48 kcal Atomic # 7 Polarization: -133.47 SS G_CDS: -10.39 Total: -143.86 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.52 2.69 -73.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041288464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.615 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds