Wall clock time and date at job start Wed Apr 1 2020 03:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99910 * 2 1 4 4 C 1.38401 * 119.99928 * 179.97438 * 2 1 3 5 5 C 1.39884 * 119.99883 * 5.00244 * 4 2 1 6 6 N 1.31454 * 120.01590 * 179.97438 * 5 4 2 7 7 C 1.33285 * 120.00721 * 0.02562 * 6 5 4 8 8 C 1.47814 * 120.00222 * 180.02562 * 7 6 5 9 9 O 1.21564 * 120.00190 * 188.11335 * 8 7 6 10 10 N 1.34779 * 120.00262 * 8.10694 * 8 7 6 11 11 C 1.47151 * 121.20903 * 10.35876 * 10 8 7 12 12 C 1.53340 * 107.71263 * 122.69125 * 11 10 8 13 13 C 1.53092 * 110.49883 * 57.57263 * 12 11 10 14 14 H 1.09002 * 113.06122 * 70.86315 * 13 12 11 15 15 C 1.56026 * 106.39550 * 195.29132 * 13 12 11 16 16 C 1.54505 * 102.61156 * 78.37819 * 15 13 12 17 17 N 1.47440 * 107.14873 * 22.84844 * 16 15 13 18 18 C 1.36939 * 126.05812 * 181.59094 * 17 16 15 19 19 H 1.07999 * 119.99460 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00077 * 0.03593 * 18 17 16 21 21 N 1.31616 * 120.00148 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99739 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47088 * 90.00375 * 22 20 18 24 24 H 1.48503 * 109.47010 * 210.00107 * 22 20 18 25 25 H 1.48500 * 109.47313 * 330.00444 * 22 20 18 26 26 C 1.46467 * 107.87697 * 1.62048 * 17 16 15 27 27 H 1.09004 * 108.41619 * 89.24278 * 26 17 16 28 28 C 1.46761 * 121.21625 * 190.64058 * 10 8 7 29 29 C 1.39407 * 119.99609 * 0.02562 * 7 6 5 30 30 N 1.32051 * 119.98822 * 359.97438 * 29 7 6 31 31 H 1.08999 * 109.47212 * 270.00208 * 1 2 3 32 32 H 1.08998 * 109.47518 * 30.00083 * 1 2 3 33 33 H 1.09004 * 109.47210 * 150.00062 * 1 2 3 34 34 H 1.09001 * 109.47428 * 269.99997 * 3 2 1 35 35 H 1.09004 * 109.47393 * 29.99875 * 3 2 1 36 36 H 1.09002 * 109.47069 * 149.99805 * 3 2 1 37 37 H 1.08001 * 119.99301 * 359.72079 * 5 4 2 38 38 H 1.09001 * 109.76145 * 242.33375 * 11 10 8 39 39 H 1.08993 * 109.76601 * 3.09586 * 11 10 8 40 40 H 1.08999 * 109.39477 * 297.24875 * 12 11 10 41 41 H 1.08995 * 109.16053 * 177.74432 * 12 11 10 42 42 H 1.08998 * 110.78369 * 320.10107 * 15 13 12 43 43 H 1.08999 * 110.78554 * 196.65946 * 15 13 12 44 44 H 1.08994 * 109.90451 * 263.46564 * 16 15 13 45 45 H 1.09008 * 109.89933 * 142.22443 * 16 15 13 46 46 H 0.97000 * 120.00088 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.22173 * 352.83856 * 28 10 8 48 48 H 1.09004 * 109.22205 * 112.23364 * 28 10 8 49 49 H 1.08000 * 120.00796 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4077 -0.1046 6 7 2.1185 -3.5464 -0.1046 7 6 3.4475 -3.5491 -0.0040 8 6 4.1862 -4.8294 -0.0046 9 8 5.3780 -4.8437 0.2343 10 7 3.5383 -5.9811 -0.2698 11 6 2.1582 -5.9795 -0.7804 12 6 2.1520 -6.7421 -2.1107 13 6 2.6854 -8.1639 -1.9160 14 1 1.9994 -8.8052 -1.3625 15 6 3.0107 -8.7111 -3.3405 16 6 4.3632 -8.0362 -3.6604 17 7 4.9850 -7.6767 -2.3727 18 6 6.1808 -7.0301 -2.2077 19 1 6.5456 -6.8150 -1.2143 20 6 6.9238 -6.6511 -3.3173 21 7 6.4788 -6.9127 -4.5280 22 14 8.5547 -5.7685 -3.0921 23 1 9.6506 -6.7672 -3.0090 24 1 8.7932 -4.8668 -4.2476 25 1 8.5167 -4.9700 -1.8406 26 6 4.0971 -8.1343 -1.3015 27 1 4.3699 -9.1571 -1.0415 28 6 4.1813 -7.2826 -0.0543 29 6 4.1409 -2.3443 0.1019 30 7 3.4808 -1.2007 0.1019 31 1 -0.3633 0.0000 1.0276 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 2.3791 1.5834 -1.0277 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5139 37 1 0.3843 -2.4060 -0.1816 38 1 1.5003 -6.4742 -0.0659 39 1 1.8254 -4.9539 -0.9398 40 1 2.7799 -6.2181 -2.8313 41 1 1.1316 -6.7900 -2.4908 42 1 2.2473 -8.4054 -4.0559 43 1 3.1142 -9.7960 -3.3238 44 1 4.1983 -7.1386 -4.2563 45 1 5.0057 -8.7309 -4.2015 46 1 6.9978 -6.6475 -5.3033 47 1 5.2287 -7.1270 0.2043 48 1 3.6819 -7.7981 0.7662 49 1 5.2178 -2.3464 0.1838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042061424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:23 Heat of formation + Delta-G solvation = 88.215861 kcal Electronic energy + Delta-G solvation = -31925.621523 eV Core-core repulsion = 27890.204300 eV Total energy + Delta-G solvation = -4035.417224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31712 -39.60452 -37.99012 -37.03312 -35.05514 -34.02501 -32.68606 -31.26580 -30.75509 -28.98538 -28.80269 -28.21542 -26.42957 -24.50253 -24.35314 -23.87297 -22.43906 -22.23952 -20.26902 -19.84463 -18.43866 -17.94576 -17.65501 -16.71123 -16.40546 -15.92875 -15.53909 -15.09270 -14.94023 -14.77690 -14.70335 -14.17562 -14.04994 -13.86795 -13.68671 -13.32239 -13.01016 -12.83405 -12.82527 -12.59013 -12.50642 -12.36406 -11.86795 -11.84901 -11.43932 -11.28921 -11.22577 -10.79066 -10.73193 -10.66048 -10.45981 -10.19786 -9.98365 -9.77237 -9.71248 -9.68454 -9.51977 -9.35332 -8.65596 -8.41546 -8.05544 -7.82583 -6.64616 -5.52490 -2.83691 0.69099 1.06932 2.44955 3.12696 3.47980 3.55100 3.60177 3.68646 3.98413 4.12535 4.17541 4.29240 4.69159 4.70290 4.82409 4.90766 4.96656 5.15348 5.19554 5.25552 5.28759 5.37545 5.48968 5.51585 5.54249 5.69286 5.76614 5.88021 5.94548 5.98219 6.10013 6.13775 6.26462 6.37139 6.38595 6.41536 6.55138 6.61102 6.66016 6.74427 6.79678 6.86852 7.11607 7.27432 7.29352 7.71703 7.73297 7.75878 8.02837 8.06103 8.41800 8.73670 9.41375 10.02323 10.66698 11.60150 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.003882 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.759909 B = 7210.382568 C = 8479.612533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.604 5.604 3 C 0.093 3.907 4 C 0.366 3.634 5 C -0.016 4.016 6 N -0.365 5.365 7 C -0.030 4.030 8 C 0.582 3.418 9 O -0.526 6.526 10 N -0.575 5.575 11 C 0.084 3.916 12 C -0.122 4.122 13 C -0.102 4.102 14 H 0.073 0.927 15 C -0.145 4.145 16 C 0.179 3.821 17 N -0.588 5.588 18 C -0.206 4.206 19 H 0.084 0.916 20 C -0.011 4.011 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.292 1.292 24 H -0.295 1.295 25 H -0.276 1.276 26 C 0.155 3.845 27 H 0.025 0.975 28 C 0.113 3.887 29 C 0.170 3.830 30 N -0.507 5.507 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.169 0.831 38 H 0.056 0.944 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.247 0.753 47 H 0.094 0.906 48 H 0.055 0.945 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.454 11.315 9.492 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.316 5.316 3 C -0.050 4.050 4 C 0.127 3.873 5 C -0.187 4.187 6 N -0.081 5.081 7 C -0.171 4.171 8 C 0.368 3.632 9 O -0.402 6.402 10 N -0.306 5.306 11 C -0.039 4.039 12 C -0.160 4.160 13 C -0.122 4.122 14 H 0.092 0.908 15 C -0.183 4.183 16 C 0.055 3.945 17 N -0.313 5.313 18 C -0.335 4.335 19 H 0.102 0.898 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.733 3.267 23 H -0.219 1.219 24 H -0.221 1.221 25 H -0.201 1.201 26 C 0.046 3.954 27 H 0.042 0.958 28 C -0.010 4.010 29 C 0.009 3.991 30 N -0.229 5.229 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.186 0.814 38 H 0.074 0.926 39 H 0.148 0.852 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.073 0.927 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.662 11.565 9.491 22.393 hybrid contribution 0.734 0.437 -0.238 0.886 sum -15.928 12.002 9.253 21.986 Atomic orbital electron populations 1.21835 0.77803 1.03622 1.02074 1.46150 1.05534 1.03054 1.76900 1.21686 0.97882 0.83584 1.01831 1.19581 0.89913 0.87436 0.90416 1.23339 1.01394 0.87061 1.06879 1.68235 1.08027 1.26822 1.05048 1.21920 0.90321 0.96190 1.08636 1.17312 0.85816 0.82196 0.77903 1.90806 1.13389 1.85799 1.50191 1.47532 1.14883 1.05081 1.63104 1.22773 0.81921 1.04809 0.94360 1.21936 1.00106 0.95956 0.97996 1.22398 0.96752 0.95958 0.97113 0.90829 1.23172 0.99992 0.99331 0.95795 1.21199 0.88077 0.97290 0.87950 1.44303 1.19550 1.67687 0.99774 1.19098 0.93322 1.27968 0.93087 0.89819 1.24686 0.98932 1.01647 0.95300 1.69966 1.38417 1.52715 0.96662 0.86221 0.83971 0.79424 0.77103 1.21949 1.22117 1.20099 1.20683 0.89956 0.95187 0.89561 0.95798 1.21429 0.99800 0.82721 0.97083 1.23518 1.01729 0.85803 0.88085 1.68109 1.06213 1.29664 1.18919 0.92335 0.90482 0.90590 0.92904 0.91468 0.89901 0.81364 0.92611 0.85154 0.90579 0.92483 0.92451 0.92889 0.93843 0.94214 0.94241 0.88743 0.92720 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.28 59.85 0.62 1.04 16 2 N -0.60 -5.24 3.37 -189.51 -0.64 -5.88 16 3 C 0.09 0.69 10.50 59.85 0.63 1.32 16 4 C 0.37 4.37 7.37 -155.00 -1.14 3.23 16 5 C -0.02 -0.18 10.42 -17.10 -0.18 -0.36 16 6 N -0.37 -5.25 6.34 -9.45 -0.06 -5.31 16 7 C -0.03 -0.51 6.58 -82.88 -0.55 -1.06 16 8 C 0.58 11.78 7.65 -12.34 -0.09 11.68 16 9 O -0.53 -12.32 15.81 5.31 0.08 -12.23 16 10 N -0.58 -10.93 2.96 -174.91 -0.52 -11.45 16 11 C 0.08 1.34 5.97 -3.51 -0.02 1.32 16 12 C -0.12 -2.07 5.06 -26.51 -0.13 -2.21 16 13 C -0.10 -1.80 3.68 -88.43 -0.33 -2.12 16 14 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 15 C -0.14 -2.75 6.33 -24.32 -0.15 -2.90 16 16 C 0.18 4.44 4.61 -2.74 -0.01 4.43 16 17 N -0.59 -15.08 3.20 -164.41 -0.53 -15.61 16 18 C -0.21 -5.94 9.70 -15.06 -0.15 -6.08 16 19 H 0.08 2.45 6.47 -52.49 -0.34 2.11 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 21 N -0.93 -28.39 10.38 55.49 0.58 -27.82 16 22 Si 0.90 23.93 29.55 -169.99 -5.02 18.91 16 23 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 24 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 26 C 0.15 3.22 2.97 -68.30 -0.20 3.02 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 C 0.11 2.21 5.69 -4.78 -0.03 2.18 16 29 C 0.17 2.69 10.76 -17.02 -0.18 2.50 16 30 N -0.51 -7.19 9.22 -11.96 -0.11 -7.30 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.08 0.30 5.98 -51.93 -0.31 -0.01 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 36 H 0.08 0.74 7.30 -51.93 -0.38 0.36 16 37 H 0.17 1.28 6.03 -52.49 -0.32 0.97 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.13 2.03 4.07 -79.51 -0.32 1.71 16 40 H 0.08 1.61 6.85 -51.93 -0.36 1.26 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.99 7.97 -51.93 -0.41 0.58 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.04 1.20 7.04 -51.93 -0.37 0.84 16 45 H 0.04 1.10 7.57 -51.92 -0.39 0.70 16 46 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.09 2.11 5.54 -51.93 -0.29 1.82 16 48 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.18 2.83 7.65 -52.49 -0.40 2.43 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -35.40 377.28 -9.79 -45.19 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.24 Total: 0.24 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: -2.02 Total: 15.57 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.28 Total: -73.36 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.40 -9.79 -45.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042061424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.409 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds