Wall clock time and date at job start Wed Apr 1 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99910 * 2 1 4 4 C 1.38401 * 119.99928 * 179.97438 * 2 1 3 5 5 C 1.39884 * 119.99883 * 5.00244 * 4 2 1 6 6 N 1.31454 * 120.01590 * 179.97438 * 5 4 2 7 7 C 1.33285 * 120.00721 * 0.02562 * 6 5 4 8 8 C 1.47814 * 120.00222 * 180.02562 * 7 6 5 9 9 O 1.21564 * 120.00190 * 188.11335 * 8 7 6 10 10 N 1.34779 * 120.00262 * 8.10694 * 8 7 6 11 11 C 1.47151 * 121.20903 * 10.35876 * 10 8 7 12 12 C 1.53340 * 107.71263 * 122.69125 * 11 10 8 13 13 C 1.53092 * 110.49883 * 57.57263 * 12 11 10 14 14 H 1.09002 * 113.06122 * 70.86315 * 13 12 11 15 15 C 1.56026 * 106.39550 * 195.29132 * 13 12 11 16 16 C 1.54505 * 102.61156 * 78.37819 * 15 13 12 17 17 N 1.47440 * 107.14873 * 22.84844 * 16 15 13 18 18 C 1.36939 * 126.05812 * 181.59094 * 17 16 15 19 19 H 1.07999 * 119.99460 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00077 * 0.03593 * 18 17 16 21 21 N 1.31616 * 120.00148 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99739 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47088 * 90.00375 * 22 20 18 24 24 H 1.48503 * 109.47010 * 210.00107 * 22 20 18 25 25 H 1.48500 * 109.47313 * 330.00444 * 22 20 18 26 26 C 1.46467 * 107.87697 * 1.62048 * 17 16 15 27 27 H 1.09004 * 108.41619 * 89.24278 * 26 17 16 28 28 C 1.46761 * 121.21625 * 190.64058 * 10 8 7 29 29 C 1.39407 * 119.99609 * 0.02562 * 7 6 5 30 30 N 1.32051 * 119.98822 * 359.97438 * 29 7 6 31 31 H 1.08999 * 109.47212 * 270.00208 * 1 2 3 32 32 H 1.08998 * 109.47518 * 30.00083 * 1 2 3 33 33 H 1.09004 * 109.47210 * 150.00062 * 1 2 3 34 34 H 1.09001 * 109.47428 * 269.99997 * 3 2 1 35 35 H 1.09004 * 109.47393 * 29.99875 * 3 2 1 36 36 H 1.09002 * 109.47069 * 149.99805 * 3 2 1 37 37 H 1.08001 * 119.99301 * 359.72079 * 5 4 2 38 38 H 1.09001 * 109.76145 * 242.33375 * 11 10 8 39 39 H 1.08993 * 109.76601 * 3.09586 * 11 10 8 40 40 H 1.08999 * 109.39477 * 297.24875 * 12 11 10 41 41 H 1.08995 * 109.16053 * 177.74432 * 12 11 10 42 42 H 1.08998 * 110.78369 * 320.10107 * 15 13 12 43 43 H 1.08999 * 110.78554 * 196.65946 * 15 13 12 44 44 H 1.08994 * 109.90451 * 263.46564 * 16 15 13 45 45 H 1.09008 * 109.89933 * 142.22443 * 16 15 13 46 46 H 0.97000 * 120.00088 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.22173 * 352.83856 * 28 10 8 48 48 H 1.09004 * 109.22205 * 112.23364 * 28 10 8 49 49 H 1.08000 * 120.00796 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4077 -0.1046 6 7 2.1185 -3.5464 -0.1046 7 6 3.4475 -3.5491 -0.0040 8 6 4.1862 -4.8294 -0.0046 9 8 5.3780 -4.8437 0.2343 10 7 3.5383 -5.9811 -0.2698 11 6 2.1582 -5.9795 -0.7804 12 6 2.1520 -6.7421 -2.1107 13 6 2.6854 -8.1639 -1.9160 14 1 1.9994 -8.8052 -1.3625 15 6 3.0107 -8.7111 -3.3405 16 6 4.3632 -8.0362 -3.6604 17 7 4.9850 -7.6767 -2.3727 18 6 6.1808 -7.0301 -2.2077 19 1 6.5456 -6.8150 -1.2143 20 6 6.9238 -6.6511 -3.3173 21 7 6.4788 -6.9127 -4.5280 22 14 8.5547 -5.7685 -3.0921 23 1 9.6506 -6.7672 -3.0090 24 1 8.7932 -4.8668 -4.2476 25 1 8.5167 -4.9700 -1.8406 26 6 4.0971 -8.1343 -1.3015 27 1 4.3699 -9.1571 -1.0415 28 6 4.1813 -7.2826 -0.0543 29 6 4.1409 -2.3443 0.1019 30 7 3.4808 -1.2007 0.1019 31 1 -0.3633 0.0000 1.0276 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 2.3791 1.5834 -1.0277 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5139 37 1 0.3843 -2.4060 -0.1816 38 1 1.5003 -6.4742 -0.0659 39 1 1.8254 -4.9539 -0.9398 40 1 2.7799 -6.2181 -2.8313 41 1 1.1316 -6.7900 -2.4908 42 1 2.2473 -8.4054 -4.0559 43 1 3.1142 -9.7960 -3.3238 44 1 4.1983 -7.1386 -4.2563 45 1 5.0057 -8.7309 -4.2015 46 1 6.9978 -6.6475 -5.3033 47 1 5.2287 -7.1270 0.2043 48 1 3.6819 -7.7981 0.7662 49 1 5.2178 -2.3464 0.1838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042061424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:22 Heat of formation + Delta-G solvation = 64.085895 kcal Electronic energy + Delta-G solvation = -31926.667877 eV Core-core repulsion = 27890.204300 eV Total energy + Delta-G solvation = -4036.463577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.39550 -41.05985 -39.49364 -37.93750 -36.59149 -35.20284 -34.57126 -32.81862 -32.06794 -30.55789 -29.99915 -29.35070 -27.43494 -26.43925 -25.52131 -25.18825 -23.79771 -23.35305 -21.71973 -21.62398 -19.96153 -19.05947 -18.56997 -18.37424 -17.96359 -17.00494 -16.81452 -16.75610 -16.19124 -16.04293 -15.91849 -15.62985 -15.42880 -15.28785 -14.94705 -14.83308 -14.31001 -14.15236 -14.01497 -13.70815 -13.46910 -13.40731 -13.18009 -13.12370 -12.95604 -12.84894 -12.65635 -12.62967 -12.43205 -12.32176 -12.07376 -11.90904 -11.64149 -11.34647 -11.22542 -11.17226 -11.13428 -10.95277 -10.63978 -9.84802 -9.44120 -8.79284 -8.73781 -7.80506 -5.09986 -0.42215 0.04610 1.36486 1.38193 1.51088 1.71089 1.81497 2.14452 2.51032 2.79607 3.03686 3.20448 3.38210 3.38966 3.56545 3.79927 3.93274 4.01765 4.06914 4.16290 4.24654 4.35502 4.40748 4.49720 4.52267 4.55193 4.59615 4.67677 4.74858 4.76810 4.78135 4.88242 4.94278 4.95367 5.01753 5.05276 5.18759 5.19757 5.32995 5.38789 5.58379 5.66516 5.69112 5.74975 5.82911 5.86766 5.96003 6.26349 6.29957 6.57378 6.76698 7.18553 7.27332 7.86855 8.49840 9.30546 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.003882 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.759909 B = 7210.382568 C = 8479.612533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.592 5.592 3 C 0.087 3.913 4 C 0.366 3.634 5 C 0.004 3.996 6 N -0.367 5.367 7 C -0.064 4.064 8 C 0.571 3.429 9 O -0.579 6.579 10 N -0.579 5.579 11 C 0.085 3.915 12 C -0.117 4.117 13 C -0.085 4.085 14 H 0.123 0.877 15 C -0.130 4.130 16 C 0.187 3.813 17 N -0.605 5.605 18 C -0.196 4.196 19 H 0.071 0.929 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.953 3.047 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.284 1.284 26 C 0.142 3.858 27 H 0.029 0.971 28 C 0.115 3.885 29 C 0.162 3.838 30 N -0.526 5.526 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.217 0.783 38 H 0.091 0.909 39 H 0.138 0.862 40 H 0.024 0.976 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.003 0.997 45 H -0.001 1.001 46 H 0.240 0.760 47 H 0.054 0.946 48 H 0.095 0.905 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.509 12.144 10.750 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.303 5.303 3 C -0.056 4.056 4 C 0.123 3.877 5 C -0.170 4.170 6 N -0.083 5.083 7 C -0.201 4.201 8 C 0.359 3.641 9 O -0.459 6.459 10 N -0.309 5.309 11 C -0.037 4.037 12 C -0.155 4.155 13 C -0.105 4.105 14 H 0.141 0.859 15 C -0.168 4.168 16 C 0.062 3.938 17 N -0.330 5.330 18 C -0.326 4.326 19 H 0.088 0.912 20 C -0.260 4.260 21 N -0.604 5.604 22 Si 0.784 3.216 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.209 1.209 26 C 0.035 3.965 27 H 0.046 0.954 28 C -0.008 4.008 29 C 0.002 3.998 30 N -0.250 5.250 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.155 0.845 40 H 0.043 0.957 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.021 0.979 45 H 0.017 0.983 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.113 0.887 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.761 12.381 10.772 27.255 hybrid contribution 2.099 0.393 -0.565 2.208 sum -19.662 12.773 10.208 25.573 Atomic orbital electron populations 1.22234 0.74877 1.05507 1.03762 1.46628 1.07305 1.02236 1.74085 1.21829 0.97762 0.83759 1.02213 1.19998 0.89376 0.89203 0.89115 1.24084 1.03121 0.85811 1.04014 1.68090 1.06555 1.28210 1.05445 1.21324 0.91470 0.94538 1.12817 1.17891 0.85564 0.83635 0.77043 1.90753 1.15713 1.86765 1.52704 1.47725 1.16029 1.04430 1.62731 1.23011 0.80538 1.05717 0.94387 1.21896 1.01134 0.94983 0.97485 1.22459 0.95157 0.97101 0.95749 0.85933 1.23037 0.96562 0.99701 0.97486 1.20948 0.90685 0.95062 0.87061 1.44500 1.19523 1.67141 1.01839 1.19167 0.94521 1.26658 0.92280 0.91168 1.25312 1.01840 1.03458 0.95410 1.70159 1.39178 1.54262 0.96826 0.85406 0.81407 0.78466 0.76325 1.21112 1.22106 1.20943 1.21016 0.91387 0.95094 0.89038 0.95359 1.21339 0.98423 0.83483 0.97595 1.23263 1.01337 0.86401 0.88812 1.68109 1.07715 1.28649 1.20492 0.90609 0.88211 0.89224 0.92649 0.88135 0.91877 0.76706 0.89098 0.84517 0.95693 0.88488 0.90207 0.91226 0.97889 0.98315 0.95051 0.92723 0.88684 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.33 10.28 127.77 1.31 1.64 16 2 N -0.59 -8.16 3.37 -753.48 -2.54 -10.70 16 3 C 0.09 1.06 10.50 127.77 1.34 2.40 16 4 C 0.37 7.91 7.37 133.34 0.98 8.89 16 5 C 0.00 0.08 10.42 85.15 0.89 0.96 16 6 N -0.37 -9.90 6.34 -183.80 -1.17 -11.07 16 7 C -0.06 -2.23 6.58 41.74 0.27 -1.96 16 8 C 0.57 24.25 7.65 86.78 0.66 24.91 16 9 O -0.58 -29.44 15.81 -3.92 -0.06 -29.50 16 10 N -0.58 -21.97 2.96 -825.57 -2.44 -24.42 16 11 C 0.08 2.47 5.97 86.37 0.52 2.98 16 12 C -0.12 -3.65 5.06 30.74 0.16 -3.49 16 13 C -0.09 -2.71 3.68 -9.38 -0.03 -2.75 16 14 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 15 C -0.13 -4.67 6.33 32.16 0.20 -4.47 16 16 C 0.19 9.62 4.61 86.71 0.40 10.02 16 17 N -0.61 -32.21 3.20 -674.08 -2.15 -34.36 16 18 C -0.20 -11.94 9.70 84.03 0.81 -11.13 16 19 H 0.07 4.41 6.47 -2.91 -0.02 4.39 16 20 C -0.07 -4.28 5.49 84.86 0.47 -3.82 16 21 N -0.95 -61.61 10.38 21.65 0.22 -61.38 16 22 Si 0.95 52.09 29.55 68.60 2.03 54.11 16 23 H -0.28 -14.98 7.11 99.48 0.71 -14.28 16 24 H -0.29 -15.92 7.11 99.48 0.71 -15.22 16 25 H -0.28 -15.69 7.11 99.48 0.71 -14.99 16 26 C 0.14 5.80 2.97 44.77 0.13 5.94 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 C 0.12 4.49 5.69 85.76 0.49 4.98 16 29 C 0.16 5.45 10.76 84.94 0.91 6.36 16 30 N -0.53 -15.01 9.22 -191.74 -1.77 -16.77 16 31 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.10 0.07 8.07 -2.39 -0.02 0.05 16 33 H 0.09 0.18 5.98 -2.38 -0.01 0.17 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.10 0.58 8.07 -2.38 -0.02 0.56 16 36 H 0.06 1.06 7.30 -2.39 -0.02 1.04 16 37 H 0.22 2.01 6.03 -2.91 -0.02 1.99 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.14 3.89 4.07 -56.83 -0.23 3.66 16 40 H 0.02 1.03 6.85 -2.39 -0.02 1.02 16 41 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.08 2.54 7.97 -2.39 -0.02 2.52 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.00 0.17 7.04 -2.39 -0.02 0.15 16 45 H 0.00 -0.08 7.57 -2.38 -0.02 -0.10 16 46 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.05 2.57 5.54 -2.39 -0.01 2.56 16 48 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 49 H 0.17 5.83 7.65 -2.91 -0.02 5.81 16 Total: -1.00 -86.88 377.28 2.38 -84.50 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.75 Total: 8.11 kcal Atomic # 6 Polarization: 31.97 SS G_CDS: 9.52 Total: 41.48 kcal Atomic # 7 Polarization: -148.85 SS G_CDS: -9.85 Total: -158.70 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.06 Total: -29.50 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 2.03 Total: 54.11 kcal Total: -86.88 2.38 -84.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042061424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.584 kcal (2) G-P(sol) polarization free energy of solvation -86.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds