Wall clock time and date at job start Wed Apr 1 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00210 * 2 1 4 4 C 1.38509 * 119.99778 * 180.02562 * 2 1 3 5 5 C 1.39592 * 120.05033 * 5.01461 * 4 2 1 6 6 C 1.38292 * 118.03034 * 179.70402 * 5 4 2 7 7 C 1.40068 * 117.98927 * 0.53023 * 6 5 4 8 8 C 1.47856 * 120.09730 * 179.73138 * 7 6 5 9 9 O 1.21561 * 120.00028 * 350.82001 * 8 7 6 10 10 N 1.34776 * 120.00226 * 170.81981 * 8 7 6 11 11 C 1.46602 * 119.75183 * 172.41006 * 10 8 7 12 12 C 1.53886 * 110.70883 * 132.27635 * 11 10 8 13 13 C 1.51977 * 107.28569 * 51.80979 * 12 11 10 14 14 H 1.08996 * 111.56232 * 56.84366 * 13 12 11 15 15 C 1.53696 * 115.00844 * 184.54059 * 13 12 11 16 16 C 1.55295 * 101.84970 * 153.49473 * 15 13 12 17 17 N 1.48164 * 107.03908 * 337.53458 * 16 15 13 18 18 C 1.36935 * 126.39519 * 175.02522 * 17 16 15 19 19 H 1.07995 * 119.99761 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00009 * 0.02562 * 18 17 16 21 21 N 1.31620 * 120.00553 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46645 * 90.00107 * 22 20 18 24 24 H 1.48491 * 109.47397 * 210.00221 * 22 20 18 25 25 H 1.48499 * 109.46940 * 330.00673 * 22 20 18 26 26 C 1.45513 * 107.20462 * 354.99645 * 17 16 15 27 27 H 1.09000 * 109.57338 * 273.37179 * 26 17 16 28 28 C 1.47890 * 120.26660 * 352.87462 * 10 8 7 29 29 N 1.32759 * 119.80900 * 359.46609 * 7 6 5 30 30 N 1.28357 * 122.10291 * 0.26928 * 29 7 6 31 31 H 1.09007 * 109.46745 * 269.99938 * 1 2 3 32 32 H 1.08997 * 109.47693 * 29.99425 * 1 2 3 33 33 H 1.09000 * 109.47707 * 150.00066 * 1 2 3 34 34 H 1.09003 * 109.47362 * 270.00409 * 3 2 1 35 35 H 1.09002 * 109.46825 * 29.99678 * 3 2 1 36 36 H 1.08994 * 109.47377 * 150.00377 * 3 2 1 37 37 H 1.08007 * 120.98696 * 0.02562 * 5 4 2 38 38 H 1.07998 * 121.00645 * 180.26295 * 6 5 4 39 39 H 1.08998 * 109.22985 * 11.95577 * 11 10 8 40 40 H 1.09002 * 109.22907 * 252.59253 * 11 10 8 41 41 H 1.08996 * 109.89157 * 292.35993 * 12 11 10 42 42 H 1.09003 * 109.95210 * 171.28643 * 12 11 10 43 43 H 1.09005 * 110.96262 * 35.34831 * 15 13 12 44 44 H 1.09000 * 110.96164 * 271.64487 * 15 13 12 45 45 H 1.09003 * 109.92052 * 96.87578 * 16 15 13 46 46 H 1.08995 * 109.92579 * 217.98613 * 16 15 13 47 47 H 0.96992 * 120.00124 * 179.97438 * 21 20 18 48 48 H 1.09005 * 110.46090 * 112.42833 * 28 10 8 49 49 H 1.09001 * 109.63387 * 350.88726 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1574 -1.1996 -0.0005 5 6 1.4645 -2.4067 -0.1067 6 6 2.1980 -3.5790 -0.1092 7 6 3.5906 -3.4834 0.0063 8 6 4.4198 -4.7076 0.0147 9 8 3.8908 -5.7995 0.0897 10 7 5.7621 -4.6129 -0.0608 11 6 6.5870 -5.8120 0.1152 12 6 7.6467 -5.9114 -0.9962 13 6 8.3812 -4.5817 -1.0401 14 1 8.8217 -4.3353 -0.0740 15 6 9.4146 -4.4472 -2.1698 16 6 9.4484 -2.9103 -2.3898 17 7 8.1689 -2.3697 -1.8741 18 6 7.8225 -1.0479 -1.7849 19 1 6.8571 -0.7682 -1.3897 20 6 8.7121 -0.0675 -2.2023 21 7 9.8885 -0.4083 -2.6843 22 14 8.2397 1.7357 -2.0799 23 1 8.6587 2.2685 -0.7585 24 1 8.9167 2.4991 -3.1587 25 1 6.7682 1.8728 -2.2249 26 6 7.3491 -3.5057 -1.4807 27 1 6.7899 -3.8685 -2.3431 28 6 6.4042 -3.3042 -0.3100 29 7 4.1644 -2.2901 0.1029 30 7 3.4822 -1.2029 0.0997 31 1 -0.3633 0.0000 1.0278 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8900 -0.5138 34 1 2.3791 1.5834 -1.0277 35 1 1.6084 2.0283 0.5138 36 1 3.1499 1.1383 0.5137 37 1 0.3878 -2.4243 -0.1897 38 1 1.7115 -4.5395 -0.1933 39 1 5.9486 -6.6949 0.0826 40 1 7.0855 -5.7658 1.0834 41 1 7.1626 -6.0996 -1.9545 42 1 8.3477 -6.7151 -0.7709 43 1 9.0782 -4.9625 -3.0695 44 1 10.3896 -4.8172 -1.8525 45 1 10.2835 -2.4748 -1.8411 46 1 9.5468 -2.6892 -3.4526 47 1 10.5099 0.2767 -2.9763 48 1 6.9615 -2.9797 0.5688 49 1 5.6440 -2.5660 -0.5658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042315881.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:12 Heat of formation + Delta-G solvation = 75.825936 kcal Electronic energy + Delta-G solvation = -31621.272622 eV Core-core repulsion = 27585.318131 eV Total energy + Delta-G solvation = -4035.954491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.38574 -41.13494 -39.68612 -38.11286 -36.74805 -34.77589 -34.16734 -33.36086 -32.29961 -30.79285 -30.06641 -29.39082 -27.44389 -26.37874 -25.89318 -24.92647 -23.87573 -22.98866 -21.79411 -21.59858 -20.71268 -19.11680 -18.66656 -18.41620 -17.94064 -17.09275 -16.96493 -16.64692 -16.26062 -16.03103 -15.74716 -15.62871 -15.45453 -15.19997 -15.13076 -14.70824 -14.62980 -14.42065 -13.88285 -13.73241 -13.51080 -13.42570 -13.19928 -13.10266 -13.07484 -12.89069 -12.72695 -12.49358 -12.43482 -12.08772 -11.99324 -11.80723 -11.65916 -11.52023 -11.34788 -11.30814 -11.27405 -10.82317 -10.68462 -10.20603 -9.72672 -8.92852 -8.85801 -7.80325 -5.14606 -0.40037 -0.16025 1.45006 1.47378 1.56210 1.59306 1.69451 1.90144 2.53246 2.63120 2.92542 3.36450 3.39975 3.51390 3.58935 3.65109 3.82568 3.92878 3.98699 4.04102 4.19988 4.32355 4.37871 4.38201 4.40071 4.46559 4.54821 4.59511 4.66295 4.67638 4.76764 4.81335 4.85550 4.89919 4.93185 4.97112 5.00520 5.10406 5.15161 5.17569 5.32394 5.49606 5.57051 5.65294 5.70447 5.81316 5.91788 6.00670 6.20766 6.26777 6.92962 7.13845 7.65355 7.82104 8.49416 9.31208 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008193 B = 0.004983 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.806150 B = 5617.274044 C = 8825.313464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.598 5.598 3 C 0.087 3.913 4 C 0.342 3.658 5 C -0.170 4.170 6 C -0.026 4.026 7 C -0.059 4.059 8 C 0.580 3.420 9 O -0.563 6.563 10 N -0.588 5.588 11 C 0.106 3.894 12 C -0.105 4.105 13 C -0.100 4.100 14 H 0.075 0.925 15 C -0.123 4.123 16 C 0.182 3.818 17 N -0.610 5.610 18 C -0.224 4.224 19 H 0.079 0.921 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.969 3.031 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.272 1.272 26 C 0.147 3.853 27 H 0.006 0.994 28 C 0.099 3.901 29 N -0.177 5.177 30 N -0.344 5.344 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.198 0.802 38 H 0.180 0.820 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.023 0.977 46 H 0.000 1.000 47 H 0.245 0.755 48 H 0.059 0.941 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 -5.452 6.798 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.309 5.309 3 C -0.056 4.056 4 C 0.101 3.899 5 C -0.202 4.202 6 C -0.054 4.054 7 C -0.210 4.210 8 C 0.367 3.633 9 O -0.442 6.442 10 N -0.318 5.318 11 C -0.016 4.016 12 C -0.143 4.143 13 C -0.120 4.120 14 H 0.093 0.907 15 C -0.161 4.161 16 C 0.058 3.942 17 N -0.335 5.335 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.602 5.602 22 Si 0.797 3.203 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.039 3.961 27 H 0.023 0.977 28 C -0.025 4.025 29 N -0.023 5.023 30 N -0.197 5.197 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.215 0.785 38 H 0.197 0.803 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.041 0.959 46 H 0.019 0.981 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.907 -4.731 6.935 20.687 hybrid contribution -0.637 0.724 -0.428 1.055 sum -19.544 -4.008 6.507 20.985 Atomic orbital electron populations 1.22180 0.75105 1.05315 1.03520 1.46501 1.07122 1.02158 1.75138 1.21800 0.97658 0.84050 1.02064 1.20520 0.90897 0.88971 0.89538 1.22206 1.03792 0.89309 1.04942 1.22330 0.91335 1.01511 0.90226 1.22560 0.95050 0.93744 1.09629 1.17705 0.82001 0.87250 0.76357 1.90707 1.72616 1.27645 1.53232 1.48180 1.05206 1.10197 1.68259 1.21838 0.93201 0.87201 0.99328 1.21729 0.97110 0.96806 0.98661 1.22245 0.95630 0.95552 0.98581 0.90709 1.22609 0.99576 0.95656 0.98237 1.21336 0.87520 0.89992 0.95389 1.44421 1.14918 1.00942 1.73192 1.19335 0.99840 0.81747 1.34363 0.90348 1.25519 0.96635 1.01682 1.01892 1.70156 1.08492 1.31960 1.49569 0.85210 0.77643 0.80531 0.76878 1.21242 1.22112 1.19665 1.21156 0.92585 0.88611 0.93737 0.97691 1.22600 0.98167 0.84322 0.97414 1.73049 1.28942 0.95206 1.05101 1.73165 1.05662 1.20116 1.20783 0.90854 0.88530 0.89234 0.93036 0.87954 0.92230 0.78492 0.80270 0.88487 0.90238 0.91872 0.87217 0.91362 0.89712 0.95905 0.98143 0.94591 0.92248 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.29 127.77 1.31 1.93 16 2 N -0.60 -11.00 3.38 -753.62 -2.54 -13.54 16 3 C 0.09 1.64 10.50 127.77 1.34 2.98 16 4 C 0.34 8.58 7.44 133.21 0.99 9.58 16 5 C -0.17 -3.22 9.33 22.61 0.21 -3.01 16 6 C -0.03 -0.62 9.71 22.73 0.22 -0.40 16 7 C -0.06 -1.91 6.66 42.00 0.28 -1.63 16 8 C 0.58 20.02 7.63 86.79 0.66 20.68 16 9 O -0.56 -19.91 15.76 -3.91 -0.06 -19.97 16 10 N -0.59 -20.30 3.00 -821.92 -2.47 -22.77 16 11 C 0.11 2.97 6.35 86.66 0.55 3.52 16 12 C -0.10 -2.85 5.72 30.56 0.17 -2.67 16 13 C -0.10 -3.55 2.60 -10.04 -0.03 -3.58 16 14 H 0.07 2.72 8.12 -2.39 -0.02 2.70 16 15 C -0.12 -4.59 6.54 31.62 0.21 -4.39 16 16 C 0.18 9.32 5.45 86.85 0.47 9.80 16 17 N -0.61 -32.64 3.35 -669.09 -2.24 -34.88 16 18 C -0.22 -13.04 9.88 84.03 0.83 -12.21 16 19 H 0.08 4.54 7.43 -2.91 -0.02 4.52 16 20 C -0.06 -3.82 5.49 84.86 0.47 -3.36 16 21 N -0.95 -58.90 10.44 21.65 0.23 -58.68 16 22 Si 0.97 47.77 29.55 68.60 2.03 49.79 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 24 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 26 C 0.15 6.44 2.79 45.63 0.13 6.57 16 27 H 0.01 0.26 7.93 -2.39 -0.02 0.25 16 28 C 0.10 4.00 5.09 85.71 0.44 4.44 16 29 N -0.18 -6.53 7.26 -48.50 -0.35 -6.88 16 30 N -0.34 -11.81 10.25 -55.17 -0.57 -12.37 16 31 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 33 H 0.09 0.41 6.00 -2.39 -0.01 0.40 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.20 8.07 -2.39 -0.02 1.18 16 36 H 0.06 1.48 7.31 -2.39 -0.02 1.46 16 37 H 0.20 1.73 6.11 -2.91 -0.02 1.72 16 38 H 0.18 3.36 7.74 -2.91 -0.02 3.34 16 39 H 0.10 2.61 6.92 -2.39 -0.02 2.59 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.80 7.98 -2.39 -0.02 1.78 16 42 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.07 2.39 8.12 -2.38 -0.02 2.37 16 44 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.02 1.29 7.21 -2.39 -0.02 1.27 16 46 H 0.00 0.02 7.77 -2.39 -0.02 0.00 16 47 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 48 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 49 H 0.13 5.56 3.84 -104.90 -0.40 5.16 16 Total: -1.00 -78.93 381.60 2.85 -76.08 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.57 Total: 14.95 kcal Atomic # 6 Polarization: 20.01 SS G_CDS: 8.26 Total: 28.27 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -7.95 Total: -149.12 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.79 kcal Total: -78.93 2.85 -76.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042315881.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.906 kcal (2) G-P(sol) polarization free energy of solvation -78.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds