Wall clock time and date at job start Wed Apr 1 2020 03:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00561 * 2 1 4 4 H 1.48494 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46821 * 299.99917 * 3 2 1 6 6 H 1.48498 * 109.46994 * 59.99722 * 3 2 1 7 7 C 1.38811 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00380 * 189.27341 * 7 2 1 9 9 N 1.36938 * 120.00243 * 9.27946 * 7 2 1 10 10 C 1.48180 * 127.85640 * 14.85172 * 9 7 2 11 11 C 1.54397 * 104.56558 * 140.25199 * 10 9 7 12 12 C 1.54232 * 104.95271 * 24.05188 * 11 10 9 13 13 C 1.48131 * 127.86019 * 194.86559 * 9 7 2 14 14 C 1.47093 * 112.34583 * 122.11252 * 12 11 10 15 15 C 1.52650 * 114.24744 * 183.91817 * 14 12 11 16 16 C 1.50890 * 109.38295 * 275.34653 * 15 14 12 17 17 C 1.54340 * 110.36254 * 91.69611 * 16 15 14 18 18 N 1.47588 * 111.97560 * 319.65950 * 17 16 15 19 19 C 1.34780 * 118.64688 * 137.72484 * 18 17 16 20 20 O 1.21282 * 119.99510 * 179.73511 * 19 18 17 21 21 C 1.50694 * 120.00358 * 359.73743 * 19 18 17 22 22 C 1.52998 * 109.47279 * 180.02562 * 21 19 18 23 23 N 1.46495 * 109.47116 * 180.02562 * 22 21 19 24 24 C 1.36349 * 125.64107 * 89.99724 * 23 22 21 25 25 C 1.34842 * 108.21954 * 179.97438 * 24 23 22 26 26 C 1.40892 * 107.42339 * 0.02562 * 25 24 23 27 27 C 1.34853 * 107.41412 * 359.97438 * 26 25 24 28 28 C 1.44595 * 122.69688 * 317.44903 * 18 17 16 29 29 H 0.97002 * 119.99552 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.41348 * 21.48187 * 10 9 7 31 31 H 1.08993 * 110.42011 * 259.02192 * 10 9 7 32 32 H 1.09003 * 110.34159 * 265.18430 * 11 10 9 33 33 H 1.08999 * 110.34510 * 142.92366 * 11 10 9 34 34 H 1.08995 * 110.41578 * 100.88168 * 13 9 7 35 35 H 1.09002 * 110.40822 * 338.43619 * 13 9 7 36 36 H 1.08996 * 108.53004 * 305.14932 * 14 12 11 37 37 H 1.08999 * 108.52988 * 62.68785 * 14 12 11 38 38 H 1.08996 * 109.48369 * 35.31786 * 15 14 12 39 39 H 1.08992 * 109.48622 * 155.37000 * 15 14 12 40 40 H 1.09008 * 109.34459 * 212.01446 * 16 15 14 41 41 H 1.08998 * 109.35128 * 331.56314 * 16 15 14 42 42 H 1.09001 * 109.14223 * 198.95920 * 17 16 15 43 43 H 1.08997 * 108.95121 * 80.23180 * 17 16 15 44 44 H 1.08996 * 109.47400 * 59.99689 * 21 19 18 45 45 H 1.09003 * 109.47085 * 299.99911 * 21 19 18 46 46 H 1.08996 * 109.47358 * 59.99419 * 22 21 19 47 47 H 1.09003 * 109.46790 * 299.99848 * 22 21 19 48 48 H 1.08004 * 125.88419 * 359.71437 * 24 23 22 49 49 H 1.08004 * 126.29002 * 180.02562 * 25 24 23 50 50 H 1.07998 * 126.29818 * 180.02562 * 26 25 24 51 51 H 1.07993 * 125.89406 * 179.97438 * 27 26 25 52 52 H 1.09004 * 109.47658 * 210.87222 * 28 18 17 53 53 H 1.08999 * 109.47919 * 330.88299 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0795 -1.2084 0.1513 9 7 1.3389 -2.3804 -0.1902 10 6 -0.0380 -2.5697 -0.7042 11 6 0.0574 -3.8065 -1.6235 12 6 1.2834 -4.5895 -1.1112 13 6 1.8238 -3.7556 0.0708 14 6 0.9429 -5.9640 -0.7132 15 6 2.1056 -6.7486 -0.1109 16 6 2.9230 -7.3631 -1.2204 17 6 4.0662 -6.4126 -1.6349 18 7 3.6279 -5.0037 -1.6695 19 6 4.4476 -4.0595 -1.1662 20 8 4.1140 -2.8937 -1.1865 21 6 5.7784 -4.4524 -0.5786 22 6 6.5059 -3.2014 -0.0820 23 7 7.7999 -3.5833 0.4888 24 6 8.9756 -3.6712 -0.1962 25 6 9.9395 -4.0495 0.6675 26 6 9.3370 -4.2012 1.9320 27 6 8.0278 -3.9093 1.7929 28 6 2.3578 -4.5942 -2.2263 29 1 -0.4849 0.8401 -0.0004 30 1 -0.3546 -1.6959 -1.2739 31 1 -0.7281 -2.7593 0.1178 32 1 0.2094 -3.4988 -2.6581 33 1 -0.8436 -4.4138 -1.5364 34 1 1.4227 -4.1277 1.0134 35 1 2.9135 -3.7780 0.0850 36 1 0.1366 -5.9228 0.0191 37 1 0.5817 -6.4994 -1.5912 38 1 2.7334 -6.0765 0.4739 39 1 1.7170 -7.5367 0.5339 40 1 3.3453 -8.3076 -0.8771 41 1 2.2813 -7.5487 -2.0816 42 1 4.4254 -6.6957 -2.6243 43 1 4.8846 -6.5111 -0.9218 44 1 6.3813 -4.9450 -1.3414 45 1 5.6197 -5.1353 0.2561 46 1 5.9029 -2.7091 0.6809 47 1 6.6647 -2.5182 -0.9164 48 1 9.1105 -3.4761 -1.2499 49 1 10.9819 -4.2072 0.4330 50 1 9.8327 -4.4962 2.8451 51 1 7.2874 -3.9308 2.5788 52 1 2.4509 -3.5923 -2.6454 53 1 2.0637 -5.2907 -3.0114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045976472.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:23 Heat of formation + Delta-G solvation = 41.749689 kcal Electronic energy + Delta-G solvation = -32757.540104 eV Core-core repulsion = 28823.648300 eV Total energy + Delta-G solvation = -3933.891805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.18573 -41.76542 -39.44786 -37.50998 -35.15250 -34.87603 -34.17948 -32.32005 -30.84347 -30.28955 -29.62380 -27.76224 -27.61927 -26.44829 -24.96200 -24.17224 -22.34199 -21.68975 -21.31887 -20.82313 -20.02614 -19.33426 -18.89062 -18.68050 -17.46118 -17.15972 -17.01855 -16.59609 -16.08379 -15.85736 -15.54787 -15.29716 -15.03471 -14.81741 -14.55128 -14.43228 -14.06194 -13.99213 -13.90584 -13.68754 -13.38788 -13.17123 -13.14473 -13.10145 -12.91319 -12.83721 -12.78103 -12.69524 -12.52145 -12.26351 -12.06216 -11.95823 -11.74349 -11.59424 -11.53377 -11.23542 -11.10940 -11.07994 -10.64587 -10.60763 -9.51434 -9.41305 -9.03902 -8.74360 -7.80411 -5.10602 1.39066 1.39539 1.40508 1.51719 1.74755 1.87970 2.18935 2.34288 2.52759 3.38093 3.55971 3.65044 3.72793 3.78713 3.88008 3.90415 4.06467 4.09296 4.18221 4.24955 4.32776 4.40966 4.41936 4.46538 4.50700 4.57101 4.64066 4.69701 4.76534 4.79396 4.81678 4.83831 4.86084 4.92332 5.04005 5.09000 5.15493 5.23976 5.28804 5.34441 5.40134 5.43203 5.46345 5.49207 5.56559 5.59862 5.71080 5.75163 5.86621 6.14068 6.31508 6.38177 6.49214 6.49980 7.14749 7.39394 7.83705 8.61288 9.33902 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008279 B = 0.004703 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.221159 B = 5952.421717 C = 8655.243651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.080 4.080 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.180 4.180 8 H 0.072 0.928 9 N -0.604 5.604 10 C 0.156 3.844 11 C -0.120 4.120 12 C -0.074 4.074 13 C 0.137 3.863 14 C -0.095 4.095 15 C -0.112 4.112 16 C -0.123 4.123 17 C 0.101 3.899 18 N -0.601 5.601 19 C 0.491 3.509 20 O -0.546 6.546 21 C -0.135 4.135 22 C 0.125 3.875 23 N -0.448 5.448 24 C -0.024 4.024 25 C -0.217 4.217 26 C -0.216 4.216 27 C -0.031 4.031 28 C 0.144 3.856 29 H 0.242 0.758 30 H 0.046 0.954 31 H -0.012 1.012 32 H 0.058 0.942 33 H 0.077 0.923 34 H -0.012 1.012 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.177 0.823 49 H 0.148 0.852 50 H 0.145 0.855 51 H 0.167 0.833 52 H 0.045 0.955 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.423 -21.172 -4.177 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.271 4.271 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.310 4.310 8 H 0.090 0.910 9 N -0.326 5.326 10 C 0.030 3.970 11 C -0.159 4.159 12 C -0.077 4.077 13 C 0.011 3.989 14 C -0.133 4.133 15 C -0.150 4.150 16 C -0.161 4.161 17 C -0.020 4.020 18 N -0.333 5.333 19 C 0.279 3.721 20 O -0.423 6.423 21 C -0.176 4.176 22 C 0.002 3.998 23 N -0.124 5.124 24 C -0.154 4.154 25 C -0.241 4.241 26 C -0.240 4.240 27 C -0.160 4.160 28 C 0.021 3.979 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.006 0.994 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.006 0.994 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.139 0.861 45 H 0.129 0.871 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.194 0.806 49 H 0.166 0.834 50 H 0.163 0.837 51 H 0.184 0.816 52 H 0.063 0.937 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.929 -20.236 -4.331 24.401 hybrid contribution -0.297 1.746 0.379 1.811 sum 12.633 -18.491 -3.952 22.740 Atomic orbital electron populations 1.70098 1.06050 1.24545 1.60223 1.25496 0.96345 1.00452 1.04773 0.85193 0.78095 0.80756 0.76557 1.19925 1.22204 1.22159 1.19268 0.90713 0.83422 1.37563 0.90980 1.45037 1.12624 1.01093 1.73863 1.21385 0.86370 0.95580 0.93630 1.22648 0.97646 0.96746 0.98883 1.20978 0.95104 0.95380 0.96251 1.22025 0.98610 0.84615 0.93635 1.20386 0.98543 0.93262 1.01083 1.21025 0.96645 0.98896 0.98399 1.21812 0.97047 0.98503 0.98731 1.22381 0.98010 0.78371 1.03281 1.47780 1.17616 1.07979 1.59964 1.20919 0.86698 0.85909 0.78526 1.91000 1.75655 1.19821 1.55826 1.21919 0.93273 0.99005 1.03370 1.21422 0.81833 0.96625 0.99901 1.44278 1.07696 1.52019 1.08379 1.22254 0.84677 1.09085 0.99349 1.21171 0.99663 1.09766 0.93544 1.21163 0.93713 1.10019 0.99110 1.22184 0.98748 1.08521 0.86584 1.21353 0.82242 0.99775 0.94567 0.94915 0.93550 0.99416 0.92313 0.90459 0.99420 0.91728 0.93754 0.90138 0.93663 0.90584 0.88139 0.90582 0.89703 0.88817 0.86065 0.87144 0.90577 0.89264 0.80572 0.83426 0.83691 0.81565 0.93664 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.52 10.83 21.65 0.23 -61.29 16 2 C -0.08 -4.88 5.40 84.86 0.46 -4.42 16 3 Si 0.96 50.24 29.56 68.60 2.03 52.26 16 4 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 6 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 7 C -0.18 -10.82 9.52 84.03 0.80 -10.02 16 8 H 0.07 4.39 6.76 -2.91 -0.02 4.37 16 9 N -0.60 -32.81 3.32 -688.03 -2.29 -35.10 16 10 C 0.16 8.11 5.92 86.53 0.51 8.63 16 11 C -0.12 -4.53 6.24 31.49 0.20 -4.33 16 12 C -0.07 -2.43 0.67 -52.49 -0.04 -2.46 16 13 C 0.14 5.88 4.41 86.55 0.38 6.26 16 14 C -0.10 -2.29 3.82 28.64 0.11 -2.18 16 15 C -0.11 -2.08 5.45 29.79 0.16 -1.92 16 16 C -0.12 -1.45 5.71 30.36 0.17 -1.28 16 17 C 0.10 1.35 5.99 86.63 0.52 1.87 16 18 N -0.60 -14.31 1.99 -817.45 -1.63 -15.94 16 19 C 0.49 14.16 5.65 87.65 0.50 14.65 16 20 O -0.55 -22.47 11.55 -3.03 -0.04 -22.50 16 21 C -0.14 -2.72 4.35 29.85 0.13 -2.59 16 22 C 0.12 3.06 5.38 86.38 0.46 3.52 16 23 N -0.45 -10.25 2.75 -524.49 -1.44 -11.69 16 24 C -0.02 -0.50 11.43 83.21 0.95 0.45 16 25 C -0.22 -4.52 10.86 22.14 0.24 -4.28 16 26 C -0.22 -4.68 10.86 22.14 0.24 -4.44 16 27 C -0.03 -0.70 11.43 83.21 0.95 0.25 16 28 C 0.14 4.20 4.22 87.36 0.37 4.57 16 29 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.05 2.74 6.46 -2.38 -0.02 2.73 16 31 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H 0.06 2.17 7.53 -2.39 -0.02 2.15 16 33 H 0.08 2.50 7.79 -2.39 -0.02 2.48 16 34 H -0.01 -0.55 7.95 -2.39 -0.02 -0.56 16 35 H 0.06 2.72 3.57 -2.39 -0.01 2.71 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.55 7.39 -2.39 -0.02 1.53 16 38 H 0.04 1.05 6.46 -2.39 -0.02 1.04 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.08 0.83 7.33 -2.39 -0.02 0.81 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.99 5.81 -2.39 -0.01 0.97 16 44 H 0.12 1.79 8.02 -2.39 -0.02 1.77 16 45 H 0.11 1.92 7.42 -2.39 -0.02 1.90 16 46 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 47 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16 48 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 49 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 50 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 51 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 52 H 0.04 1.75 7.09 -2.39 -0.02 1.73 16 53 H 0.10 2.13 8.08 -2.39 -0.02 2.11 16 Total: -1.00 -80.05 393.75 4.87 -75.18 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.88 Total: 16.80 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 7.12 Total: 2.29 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -5.12 Total: -124.02 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.04 Total: -22.50 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.03 Total: 52.26 kcal Total: -80.05 4.87 -75.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045976472.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.925 kcal (2) G-P(sol) polarization free energy of solvation -80.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds