Wall clock time and date at job start Wed Apr 1 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46850 * 110.99755 * 2 1 4 4 C 1.53037 * 109.52098 * 185.83946 * 3 2 1 5 5 C 1.53121 * 109.27944 * 300.81558 * 4 3 2 6 6 C 1.50696 * 109.52458 * 177.56187 * 5 4 3 7 7 O 1.21282 * 120.00262 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99732 * 180.27776 * 6 5 4 9 9 C 1.46503 * 119.99697 * 179.72192 * 8 6 5 10 10 C 1.52999 * 109.46781 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.50153 * 55.06768 * 10 9 8 12 12 C 1.53190 * 109.50002 * 294.99916 * 10 9 8 13 13 N 1.46921 * 108.77489 * 185.41422 * 12 10 9 14 14 C 1.36937 * 120.62958 * 233.62709 * 13 12 10 15 15 H 1.07999 * 120.00045 * 27.97237 * 14 13 12 16 16 C 1.38815 * 120.00323 * 207.96319 * 14 13 12 17 17 N 1.31620 * 119.99897 * 17.50489 * 16 14 13 18 18 Si 1.86796 * 120.00276 * 197.50958 * 16 14 13 19 19 H 1.48494 * 109.47366 * 94.06512 * 18 16 14 20 20 H 1.48503 * 109.47079 * 214.06618 * 18 16 14 21 21 H 1.48501 * 109.47063 * 334.06433 * 18 16 14 22 22 C 1.46926 * 118.73998 * 53.61647 * 13 12 10 23 23 C 1.53188 * 108.77153 * 306.38557 * 22 13 12 24 24 C 1.53040 * 109.31326 * 54.63609 * 23 22 13 25 25 F 1.39902 * 109.46014 * 178.61322 * 24 23 22 26 26 F 1.39897 * 109.45897 * 58.65479 * 24 23 22 27 27 C 1.53125 * 109.15663 * 57.65541 * 5 4 3 28 28 C 1.46844 * 111.00045 * 124.20506 * 2 1 3 29 29 H 1.09001 * 109.46598 * 60.00290 * 1 2 3 30 30 H 1.08994 * 109.46855 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47343 * 300.00142 * 1 2 3 32 32 H 1.09001 * 109.46613 * 65.82122 * 3 2 1 33 33 H 1.09009 * 109.45222 * 305.84440 * 3 2 1 34 34 H 1.08998 * 109.50342 * 180.87929 * 4 3 2 35 35 H 1.09001 * 109.53891 * 60.78092 * 4 3 2 36 36 H 1.09002 * 109.52415 * 297.68968 * 5 4 3 37 37 H 0.96996 * 120.00292 * 359.72272 * 8 6 5 38 38 H 1.08998 * 109.47531 * 300.00304 * 9 8 6 39 39 H 1.09001 * 109.47100 * 59.99992 * 9 8 6 40 40 H 1.09002 * 109.58997 * 305.20705 * 12 10 9 41 41 H 1.09001 * 109.58404 * 65.63092 * 12 10 9 42 42 H 0.96997 * 120.00093 * 180.02562 * 17 16 14 43 43 H 1.08993 * 109.58891 * 66.17411 * 22 13 12 44 44 H 1.08999 * 109.58773 * 186.60412 * 22 13 12 45 45 H 1.09000 * 109.49821 * 174.58678 * 23 22 13 46 46 H 1.08999 * 109.49795 * 294.68462 * 23 22 13 47 47 H 1.08998 * 109.49941 * 62.28801 * 27 5 4 48 48 H 1.09006 * 109.50116 * 182.40692 * 27 5 4 49 49 H 1.09008 * 109.46459 * 294.17967 * 28 2 1 50 50 H 1.08997 * 109.46144 * 54.15501 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5371 1.0144 6 6 5.6133 0.4465 0.8432 7 8 6.1468 0.9674 -0.1133 8 7 6.3563 -0.2186 1.7499 9 6 7.8085 -0.3119 1.5803 10 6 8.4068 -1.1127 2.7385 11 1 7.9147 -2.0832 2.8024 12 6 8.2006 -0.3476 4.0496 13 7 8.8925 -1.0646 5.1293 14 6 8.2235 -1.4235 6.2690 15 1 7.1599 -1.6076 6.2355 16 6 8.9125 -1.5509 7.4673 17 7 10.1046 -1.0093 7.6018 18 14 8.1479 -2.4909 8.8890 19 1 8.6136 -3.9006 8.8577 20 1 8.5540 -1.8638 10.1724 21 1 6.6684 -2.4555 8.7671 22 6 10.3157 -1.3894 4.9630 23 6 10.4982 -2.1428 3.6417 24 6 9.9051 -1.3138 2.5002 25 9 10.0983 -1.9846 1.2878 26 9 10.5403 -0.0684 2.4498 27 6 3.5181 -0.8714 1.0209 28 6 1.9953 -0.7707 1.1338 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7324 1.8609 0.9375 33 1 1.5634 1.9256 -0.8332 34 1 3.9099 2.3513 -0.1310 35 1 3.7820 0.8572 -1.0906 36 1 3.8896 1.0362 1.9560 37 1 5.9296 -0.6355 2.5148 38 1 8.0329 -0.8119 0.6381 39 1 8.2383 0.6898 1.5713 40 1 8.6129 0.6570 3.9552 41 1 7.1357 -0.2882 4.2743 42 1 10.5862 -1.0986 8.4390 43 1 10.9005 -0.4698 4.9431 44 1 10.6463 -2.0173 5.7903 45 1 11.5605 -2.3054 3.4594 46 1 9.9869 -3.1038 3.6973 47 1 3.7814 -1.3835 0.0955 48 1 3.9099 -1.4301 1.8710 49 1 1.7324 -0.2707 2.0661 50 1 1.5636 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046968260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:22 Heat of formation + Delta-G solvation = -125.073318 kcal Electronic energy + Delta-G solvation = -31929.618069 eV Core-core repulsion = 27434.262746 eV Total energy + Delta-G solvation = -4495.355323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.53637 -46.48786 -40.30886 -38.54524 -37.34816 -35.01108 -33.85980 -32.67554 -31.21904 -30.74994 -30.22651 -27.61169 -25.65092 -25.16259 -23.59146 -23.34933 -22.42801 -21.47819 -20.72283 -19.84058 -19.52039 -17.58364 -16.89648 -16.81661 -16.44434 -15.90427 -15.53957 -15.45713 -15.35511 -15.21676 -14.95920 -14.70636 -14.36416 -13.97053 -13.64923 -13.59213 -13.38877 -13.23895 -13.08250 -12.81068 -12.80299 -12.70831 -12.58297 -12.23570 -11.97058 -11.70197 -11.60781 -11.57049 -11.50746 -11.39412 -11.26820 -10.91526 -10.87752 -10.71425 -10.64578 -10.53661 -10.10775 -9.94843 -9.84264 -9.57741 -8.99378 -8.65716 -8.64516 -6.93454 -5.97055 -3.41842 2.66940 3.14329 3.27304 3.34637 3.36387 3.60475 4.19149 4.34082 4.40180 4.48193 4.58627 4.64373 4.68222 4.82962 4.88665 4.96549 5.02659 5.11274 5.18348 5.19184 5.25086 5.25954 5.34551 5.39955 5.42394 5.52493 5.53145 5.53731 5.62695 5.67715 5.78892 5.90384 5.92628 6.00815 6.13268 6.14701 6.24517 6.30287 6.40866 6.43981 6.66841 6.72644 6.75369 7.07235 7.41651 7.52576 7.62058 8.23380 8.25487 8.99430 9.62002 10.17530 11.12073 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.010874 B = 0.002993 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.280797 B = 9352.708203 C =11292.489705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.096 4.096 5 C -0.109 4.109 6 C 0.518 3.482 7 O -0.541 6.541 8 N -0.722 5.722 9 C 0.125 3.875 10 C -0.155 4.155 11 H 0.101 0.899 12 C 0.154 3.846 13 N -0.590 5.590 14 C -0.262 4.262 15 H 0.069 0.931 16 C 0.007 3.993 17 N -0.898 5.898 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.170 3.830 23 C -0.179 4.179 24 C 0.300 3.700 25 F -0.213 7.213 26 F -0.199 7.199 27 C -0.108 4.108 28 C 0.057 3.943 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.065 0.935 42 H 0.257 0.743 43 H 0.032 0.968 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.037 0.963 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 0.117 -12.021 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.134 4.134 5 C -0.130 4.130 6 C 0.304 3.696 7 O -0.418 6.418 8 N -0.374 5.374 9 C 0.001 3.999 10 C -0.176 4.176 11 H 0.120 0.880 12 C 0.026 3.974 13 N -0.312 5.312 14 C -0.392 4.392 15 H 0.087 0.913 16 C -0.193 4.193 17 N -0.541 5.541 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.203 1.203 22 C 0.044 3.956 23 C -0.219 4.219 24 C 0.263 3.737 25 F -0.194 7.194 26 F -0.180 7.180 27 C -0.147 4.147 28 C -0.071 4.071 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.238 0.762 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.055 0.945 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.098 0.297 -12.985 18.446 hybrid contribution -0.609 -0.260 1.798 1.916 sum -13.707 0.037 -11.187 17.693 Atomic orbital electron populations 1.22350 0.87211 1.02109 1.00651 1.61935 1.07593 1.14001 1.43469 1.22144 0.95511 0.88950 1.00660 1.21399 0.93098 1.00566 0.98331 1.21402 0.91480 0.98582 1.01543 1.20551 0.89085 0.77773 0.82157 1.90697 1.73957 1.46457 1.30719 1.45983 1.07854 1.56029 1.27556 1.21311 0.79733 1.01090 0.97808 1.22965 0.92976 1.02921 0.98770 0.88044 1.20903 0.97510 0.93375 0.85568 1.44092 1.07102 1.63982 1.16008 1.19162 0.93353 1.41213 0.85424 0.91293 1.25091 0.97379 0.99539 0.97250 1.70026 1.14141 1.44173 1.25795 0.86238 0.78784 0.79736 0.81742 1.21301 1.21666 1.20300 1.20836 0.85246 0.97432 0.92088 1.23269 1.01205 1.00493 0.96892 1.21029 0.92745 0.77958 0.81922 1.92958 1.96360 1.80847 1.49281 1.92966 1.84102 1.44281 1.96674 1.21598 0.94615 0.94984 1.03456 1.22089 0.94988 0.98542 0.91516 0.91334 0.91342 0.95682 0.94750 0.90396 0.90676 0.90158 0.88675 0.76220 0.91092 0.90771 0.94982 0.91674 0.93306 0.94943 0.88190 0.90540 0.89576 0.90342 0.90634 0.94498 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.59 60.07 0.58 0.75 16 2 N -0.55 -4.72 4.91 -242.96 -1.19 -5.91 16 3 C 0.06 0.47 5.46 -3.83 -0.02 0.44 16 4 C -0.10 -0.97 4.68 -26.65 -0.12 -1.09 16 5 C -0.11 -1.09 2.59 -91.65 -0.24 -1.33 16 6 C 0.52 6.96 7.16 -10.99 -0.08 6.88 16 7 O -0.54 -9.33 15.98 5.56 0.09 -9.24 16 8 N -0.72 -9.23 5.23 -60.29 -0.32 -9.55 16 9 C 0.12 1.88 4.83 -4.04 -0.02 1.86 16 10 C -0.15 -2.49 2.03 -90.50 -0.18 -2.68 16 11 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 12 C 0.15 2.89 5.40 -3.71 -0.02 2.87 16 13 N -0.59 -13.47 2.99 -172.33 -0.52 -13.98 16 14 C -0.26 -6.56 9.58 -15.06 -0.14 -6.71 16 15 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 16 C 0.01 0.18 4.90 -17.43 -0.09 0.10 16 17 N -0.90 -24.58 11.22 55.49 0.62 -23.96 16 18 Si 0.91 20.28 29.59 -169.99 -5.03 15.25 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.17 3.78 5.11 -3.71 -0.02 3.76 16 23 C -0.18 -3.24 5.62 -26.61 -0.15 -3.39 16 24 C 0.30 5.28 1.63 -26.69 -0.04 5.24 16 25 F -0.21 -3.69 16.41 2.25 0.04 -3.65 16 26 F -0.20 -3.82 15.72 2.25 0.04 -3.79 16 27 C -0.11 -0.95 5.25 -26.65 -0.14 -1.09 16 28 C 0.06 0.45 5.46 -3.84 -0.02 0.43 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.59 8.12 -51.92 -0.42 0.17 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 4.38 7.18 -40.82 -0.29 4.09 16 38 H 0.07 1.11 7.63 -51.93 -0.40 0.72 16 39 H 0.07 1.23 7.97 -51.93 -0.41 0.81 16 40 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 41 H 0.06 1.13 7.13 -51.93 -0.37 0.76 16 42 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 43 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 44 H 0.10 2.46 6.06 -51.93 -0.31 2.15 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 49 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 50 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -29.70 392.11 -9.54 -39.24 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.46 Total: 3.63 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.71 Total: 6.05 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -1.40 Total: -53.39 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.07 Total: -7.44 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.70 -9.54 -39.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046968260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.832 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds