Wall clock time and date at job start Wed Apr 1 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46497 * 120.00417 * 2 1 4 4 C 1.38507 * 119.99788 * 180.02562 * 2 1 3 5 5 C 1.39594 * 120.05010 * 4.99597 * 4 2 1 6 6 C 1.38285 * 118.03271 * 179.97438 * 5 4 2 7 7 C 1.40070 * 117.99306 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.09954 * 179.97438 * 7 6 5 9 9 O 1.21563 * 119.99566 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00624 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00295 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.32103 * 34.64246 * 11 10 8 13 13 C 1.53033 * 109.18019 * 154.19880 * 11 10 8 14 14 C 1.53969 * 108.82384 * 175.58652 * 13 11 10 15 15 H 1.09000 * 112.99554 * 169.00694 * 14 13 11 16 16 C 1.55430 * 106.41392 * 293.81719 * 14 13 11 17 17 C 1.55169 * 100.35153 * 73.38262 * 16 14 13 18 18 H 1.09002 * 112.48473 * 163.35514 * 17 16 14 19 19 C 1.52987 * 109.32389 * 274.99579 * 11 10 8 20 20 N 1.47793 * 104.25836 * 40.55193 * 17 16 14 21 21 C 1.36926 * 125.85734 * 153.54096 * 20 17 16 22 22 H 1.08002 * 120.00744 * 353.84000 * 21 20 17 23 23 C 1.38820 * 119.99875 * 173.84266 * 21 20 17 24 24 N 1.31612 * 119.99705 * 6.76355 * 23 21 20 25 25 Si 1.86797 * 120.00048 * 186.76237 * 23 21 20 26 26 H 1.48500 * 109.47095 * 94.98277 * 25 23 21 27 27 H 1.48493 * 109.47380 * 214.98497 * 25 23 21 28 28 H 1.48506 * 109.47419 * 334.98831 * 25 23 21 29 29 C 1.49342 * 108.53600 * 333.48368 * 20 17 16 30 30 N 1.32762 * 119.80567 * 0.25940 * 7 6 5 31 31 N 1.28360 * 122.10535 * 359.46360 * 30 7 6 32 32 H 1.09002 * 109.47281 * 240.00095 * 1 2 3 33 33 H 1.09005 * 109.47234 * 359.97438 * 1 2 3 34 34 H 1.08999 * 109.47262 * 119.99921 * 1 2 3 35 35 H 1.09000 * 109.47303 * 270.00027 * 3 2 1 36 36 H 1.09001 * 109.47357 * 30.00226 * 3 2 1 37 37 H 1.09001 * 109.47505 * 149.99679 * 3 2 1 38 38 H 1.08005 * 120.98252 * 0.02562 * 5 4 2 39 39 H 1.07999 * 121.00704 * 180.02562 * 6 5 4 40 40 H 0.97006 * 119.99578 * 0.02562 * 10 8 7 41 41 H 1.08996 * 109.58077 * 295.39151 * 13 11 10 42 42 H 1.08997 * 109.57801 * 55.78590 * 13 11 10 43 43 H 1.08998 * 111.23472 * 315.60268 * 16 14 13 44 44 H 1.09004 * 111.23728 * 191.15539 * 16 14 13 45 45 H 1.08999 * 109.52528 * 64.93728 * 19 11 10 46 46 H 1.08994 * 109.59752 * 304.74852 * 19 11 10 47 47 H 0.97003 * 120.00137 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.80050 * 242.03510 * 29 20 17 49 49 H 1.09005 * 110.28375 * 120.04412 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1574 -1.1995 -0.0005 5 6 1.4644 -2.4067 -0.1063 6 6 2.1974 -3.5793 -0.1031 7 6 3.5906 -3.4834 0.0055 8 6 4.4196 -4.7076 0.0142 9 8 3.8923 -5.7994 -0.0735 10 7 5.7599 -4.6132 0.1193 11 6 6.5814 -5.8263 0.1273 12 1 6.1296 -6.5720 -0.5268 13 6 7.9835 -5.4873 -0.3836 14 6 8.8709 -6.7402 -0.2674 15 1 9.8247 -6.6359 -0.7845 16 6 9.0269 -7.0287 1.2519 17 6 7.6139 -7.5815 1.5772 18 1 7.5840 -8.1164 2.5265 19 6 6.6537 -6.3793 1.5519 20 7 7.2833 -8.4391 0.4199 21 6 6.4313 -9.5110 0.4334 22 1 6.0103 -9.8546 1.3668 23 6 6.1085 -10.1560 -0.7527 24 7 6.7212 -9.8251 -1.8695 25 14 4.8047 -11.4936 -0.7636 26 1 3.4945 -10.9047 -1.1403 27 1 5.1780 -12.5409 -1.7479 28 1 4.7048 -12.0986 0.5890 29 6 8.0340 -7.9402 -0.7707 30 7 4.1641 -2.2903 0.1064 31 7 3.4823 -1.2028 0.0982 32 1 -0.3634 -0.5138 0.8900 33 1 -0.3634 1.0277 0.0005 34 1 -0.3634 -0.5138 -0.8900 35 1 2.3792 1.5833 -1.0276 36 1 1.6085 2.0284 0.5139 37 1 3.1499 1.1383 0.5139 38 1 0.3877 -2.4243 -0.1890 39 1 1.7105 -4.5400 -0.1829 40 1 6.1807 -3.7420 0.1897 41 1 7.9269 -5.1753 -1.4263 42 1 8.4069 -4.6829 0.2179 43 1 9.2308 -6.1140 1.8085 44 1 9.7960 -7.7792 1.4344 45 1 5.6611 -6.6989 1.8694 46 1 7.0204 -5.6056 2.2263 47 1 6.4960 -10.2761 -2.6982 48 1 7.3478 -7.6138 -1.5522 49 1 8.6931 -8.7186 -1.1554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047184704.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:20 Heat of formation + Delta-G solvation = 49.889414 kcal Electronic energy + Delta-G solvation = -30783.012427 eV Core-core repulsion = 26745.933244 eV Total energy + Delta-G solvation = -4037.079183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24870 -41.34244 -39.94072 -38.07349 -36.11186 -34.69232 -34.18778 -32.84907 -32.31430 -31.12256 -29.80940 -29.33851 -27.19397 -27.09608 -25.58688 -24.91804 -23.91381 -22.86041 -21.76161 -21.21235 -20.30505 -19.22829 -18.91052 -18.51876 -18.16899 -17.23242 -16.85710 -16.60492 -16.28539 -16.00763 -15.66398 -15.57942 -15.34350 -15.14224 -14.87831 -14.74359 -14.23220 -14.14399 -13.73658 -13.52155 -13.43039 -13.34970 -13.33131 -13.20447 -13.01440 -12.95019 -12.66706 -12.60775 -12.50139 -12.12366 -11.85262 -11.72179 -11.60119 -11.46333 -11.34784 -11.17217 -11.05565 -10.84520 -10.78284 -10.65655 -10.02016 -8.94560 -8.79215 -7.80770 -5.10427 -0.42029 -0.22423 1.40190 1.45828 1.51178 1.67461 1.68923 2.08676 2.51679 2.64579 2.98766 3.38423 3.41809 3.56117 3.63394 3.72440 3.85955 3.91957 3.97349 4.14407 4.17298 4.40720 4.41422 4.45134 4.49309 4.54756 4.55282 4.63630 4.69494 4.73481 4.80084 4.81338 4.85750 4.88217 4.89446 5.03057 5.13004 5.22001 5.31619 5.35836 5.39471 5.50738 5.53578 5.65156 5.75844 5.86877 5.92079 5.96817 6.24178 6.52761 7.14574 7.19850 7.57408 7.83327 8.50682 9.30464 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.002781 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.284756 B =10066.177412 C =11415.163100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.595 5.595 3 C 0.087 3.913 4 C 0.345 3.655 5 C -0.169 4.169 6 C -0.037 4.037 7 C -0.046 4.046 8 C 0.570 3.430 9 O -0.572 6.572 10 N -0.695 5.695 11 C 0.153 3.847 12 H 0.053 0.947 13 C -0.103 4.103 14 C -0.107 4.107 15 H 0.110 0.890 16 C -0.111 4.111 17 C 0.145 3.855 18 H 0.065 0.935 19 C -0.124 4.124 20 N -0.617 5.617 21 C -0.226 4.226 22 H 0.072 0.928 23 C -0.066 4.066 24 N -0.947 5.947 25 Si 0.964 3.036 26 H -0.299 1.299 27 H -0.291 1.291 28 H -0.268 1.268 29 C 0.189 3.811 30 N -0.174 5.174 31 N -0.324 5.324 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.189 0.811 39 H 0.160 0.840 40 H 0.416 0.584 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.022 0.978 46 H 0.084 0.916 47 H 0.242 0.758 48 H 0.011 0.989 49 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 26.433 5.440 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.306 5.306 3 C -0.056 4.056 4 C 0.104 3.896 5 C -0.202 4.202 6 C -0.065 4.065 7 C -0.198 4.198 8 C 0.354 3.646 9 O -0.450 6.450 10 N -0.345 5.345 11 C 0.050 3.950 12 H 0.072 0.928 13 C -0.141 4.141 14 C -0.127 4.127 15 H 0.128 0.872 16 C -0.149 4.149 17 C 0.038 3.962 18 H 0.083 0.917 19 C -0.165 4.165 20 N -0.342 5.342 21 C -0.355 4.355 22 H 0.090 0.910 23 C -0.259 4.259 24 N -0.597 5.597 25 Si 0.793 3.207 26 H -0.227 1.227 27 H -0.218 1.218 28 H -0.192 1.192 29 C 0.065 3.935 30 N -0.022 5.022 31 N -0.179 5.179 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.206 0.794 39 H 0.177 0.823 40 H 0.253 0.747 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.040 0.960 46 H 0.102 0.898 47 H 0.052 0.948 48 H 0.029 0.971 49 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -7.994 26.575 5.390 28.270 hybrid contribution -2.070 -1.873 -0.638 2.863 sum -10.064 24.702 4.752 27.093 Atomic orbital electron populations 1.22154 0.75421 1.05740 1.02877 1.46510 1.07006 1.02277 1.74825 1.21909 0.97833 0.83348 1.02462 1.20371 0.90975 0.88607 0.89690 1.22070 1.03544 0.89494 1.05081 1.22290 0.92339 1.01276 0.90581 1.22248 0.94276 0.93509 1.09751 1.17933 0.83078 0.87150 0.76426 1.90869 1.73413 1.29073 1.51674 1.45898 1.05464 1.10920 1.72238 1.20934 0.91443 0.85147 0.97525 0.92845 1.21925 0.92428 0.98274 1.01461 1.22786 0.98423 0.94131 0.97335 0.87168 1.22947 0.95401 1.01396 0.95133 1.21794 0.93973 0.89733 0.90728 0.91660 1.22459 0.99269 0.98805 0.95981 1.45385 1.50957 1.31642 1.06177 1.19326 1.18040 1.05027 0.93138 0.91001 1.25471 1.02061 1.02816 0.95532 1.70148 1.44856 1.45913 0.98782 0.85259 0.79200 0.78725 0.77482 1.22671 1.21805 1.19232 1.21427 0.91630 0.92008 0.88411 1.72873 1.30765 0.94343 1.04172 1.73021 1.05060 1.18961 1.20840 0.91036 0.87173 0.90947 0.92333 0.88166 0.91464 0.79376 0.82257 0.74700 0.91870 0.88051 0.87679 0.91646 0.95951 0.89793 0.94833 0.97056 0.97803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 9.42 127.77 1.20 1.55 16 2 N -0.60 -7.45 3.38 -753.62 -2.54 -9.99 16 3 C 0.09 0.84 10.47 127.77 1.34 2.18 16 4 C 0.34 6.91 7.44 133.21 0.99 7.90 16 5 C -0.17 -3.10 9.40 22.61 0.21 -2.88 16 6 C -0.04 -0.94 9.71 22.73 0.22 -0.72 16 7 C -0.05 -1.45 6.83 41.99 0.29 -1.17 16 8 C 0.57 22.08 7.77 86.79 0.67 22.75 16 9 O -0.57 -27.86 16.04 -3.91 -0.06 -27.92 16 10 N -0.69 -24.07 5.05 -445.36 -2.25 -26.32 16 11 C 0.15 6.04 2.08 45.00 0.09 6.14 16 12 H 0.05 2.85 5.40 -2.39 -0.01 2.83 16 13 C -0.10 -3.25 4.93 30.93 0.15 -3.10 16 14 C -0.11 -3.77 4.27 -9.05 -0.04 -3.81 16 15 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 16 C -0.11 -3.54 6.19 32.17 0.20 -3.34 16 17 C 0.14 5.96 4.30 45.78 0.20 6.16 16 18 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 19 C -0.12 -4.82 5.28 30.89 0.16 -4.66 16 20 N -0.62 -32.68 2.46 -658.63 -1.62 -34.30 16 21 C -0.23 -13.53 10.28 84.04 0.86 -12.66 16 22 H 0.07 4.22 7.84 -2.91 -0.02 4.20 16 23 C -0.07 -4.05 5.48 84.87 0.47 -3.59 16 24 N -0.95 -60.50 10.40 21.65 0.23 -60.27 16 25 Si 0.96 50.08 29.56 68.60 2.03 52.11 16 26 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 27 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 28 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 29 C 0.19 9.56 4.19 86.41 0.36 9.92 16 30 N -0.17 -5.12 10.73 -48.50 -0.52 -5.64 16 31 N -0.32 -8.37 10.26 -55.17 -0.57 -8.93 16 32 H 0.07 0.24 8.12 -2.39 -0.02 0.22 16 33 H 0.11 -0.04 7.79 -2.38 -0.02 -0.06 16 34 H 0.07 0.23 7.76 -2.39 -0.02 0.21 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.10 0.36 7.92 -2.39 -0.02 0.34 16 37 H 0.07 0.92 7.31 -2.39 -0.02 0.91 16 38 H 0.19 1.85 6.81 -2.91 -0.02 1.83 16 39 H 0.16 4.07 7.71 -2.91 -0.02 4.04 16 40 H 0.42 11.77 7.94 -92.70 -0.74 11.03 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.10 2.37 7.97 -2.39 -0.02 2.35 16 43 H 0.10 2.52 7.75 -2.39 -0.02 2.50 16 44 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 2.59 8.00 -2.39 -0.02 2.57 16 47 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.01 0.65 6.11 -2.39 -0.01 0.64 16 49 H 0.00 0.21 7.60 -2.38 -0.02 0.19 16 Total: -1.00 -84.97 386.43 2.31 -82.66 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.24 Total: 17.92 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 7.38 Total: 20.68 kcal Atomic # 7 Polarization: -138.17 SS G_CDS: -7.28 Total: -145.45 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.06 Total: -27.92 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.03 Total: 52.11 kcal Total: -84.97 2.31 -82.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047184704.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.550 kcal (2) G-P(sol) polarization free energy of solvation -84.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds