Wall clock time and date at job start Wed Apr 1 2020 04:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99991 * 2 1 4 4 H 1.48504 * 109.46953 * 269.99995 * 3 2 1 5 5 H 1.48500 * 109.47106 * 29.99587 * 3 2 1 6 6 H 1.48496 * 109.47120 * 150.00084 * 3 2 1 7 7 C 1.38810 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99716 * 197.35377 * 7 2 1 9 9 N 1.36935 * 120.00540 * 17.35127 * 7 2 1 10 10 C 1.46918 * 120.63302 * 207.67832 * 9 7 2 11 11 C 1.53198 * 108.77514 * 233.62766 * 10 9 7 12 12 C 1.53036 * 109.31425 * 305.36372 * 11 10 9 13 13 C 1.52999 * 109.46024 * 181.38100 * 12 11 10 14 14 H 1.08995 * 109.52742 * 299.89468 * 13 12 11 15 15 C 1.53040 * 109.49773 * 179.81282 * 13 12 11 16 16 C 1.53039 * 109.53997 * 178.68610 * 15 13 12 17 17 C 1.52763 * 109.38257 * 61.24106 * 16 15 13 18 18 N 1.46932 * 109.00902 * 305.58784 * 17 16 15 19 19 C 1.34770 * 120.63410 * 233.58681 * 18 17 16 20 20 O 1.21277 * 120.00608 * 179.71916 * 19 18 17 21 21 C 1.50706 * 119.99716 * 359.71758 * 19 18 17 22 22 C 1.50702 * 109.46757 * 179.97438 * 21 19 18 23 23 C 1.34846 * 125.88915 * 85.00397 * 22 21 19 24 24 C 1.40896 * 107.41937 * 179.73168 * 23 22 21 25 25 C 1.34858 * 107.41373 * 359.97438 * 24 23 22 26 26 N 1.36341 * 108.21965 * 0.02562 * 25 24 23 27 27 H 0.96996 * 125.63497 * 179.97438 * 26 25 24 28 28 C 1.46929 * 118.73402 * 53.30796 * 18 17 16 29 29 C 1.53043 * 109.52515 * 61.37419 * 12 11 10 30 30 C 1.46930 * 120.62615 * 27.69748 * 9 7 2 31 31 H 0.96997 * 119.99925 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.59062 * 113.84132 * 10 9 7 33 33 H 1.09003 * 109.59066 * 353.41457 * 10 9 7 34 34 H 1.09002 * 109.49789 * 185.41017 * 11 10 9 35 35 H 1.09001 * 109.49383 * 65.32026 * 11 10 9 36 36 H 1.08990 * 109.46324 * 301.35865 * 12 11 10 37 37 H 1.09000 * 109.45696 * 298.70577 * 15 13 12 38 38 H 1.08993 * 109.46202 * 58.67707 * 15 13 12 39 39 H 1.08995 * 109.49954 * 181.31511 * 16 15 13 40 40 H 1.08995 * 109.49648 * 301.41827 * 16 15 13 41 41 H 1.08998 * 109.51195 * 185.70955 * 17 16 15 42 42 H 1.08994 * 109.43803 * 65.42114 * 17 16 15 43 43 H 1.08999 * 109.47232 * 60.00093 * 21 19 18 44 44 H 1.08996 * 109.46922 * 300.00070 * 21 19 18 45 45 H 1.07998 * 126.29427 * 359.71529 * 23 22 21 46 46 H 1.08000 * 126.29641 * 180.02562 * 24 23 22 47 47 H 1.07996 * 125.88557 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.58720 * 66.43670 * 28 18 17 49 49 H 1.09004 * 109.58236 * 186.71569 * 28 18 17 50 50 H 1.08994 * 109.50250 * 58.57514 * 29 12 11 51 51 H 1.09003 * 109.49730 * 178.68023 * 29 12 11 52 52 H 1.09001 * 109.58641 * 246.15601 * 30 9 7 53 53 H 1.08997 * 109.58906 * 6.58594 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3723 -2.3613 -0.3526 10 6 1.8194 -3.6546 0.1821 11 6 2.0750 -4.6100 -0.9878 12 6 0.8196 -4.6904 -1.8593 13 6 1.0595 -5.6702 -3.0096 14 1 1.8976 -5.3240 -3.6143 15 6 -0.1972 -5.7548 -3.8791 16 6 0.0529 -6.7097 -5.0486 17 6 0.3614 -8.1044 -4.5072 18 7 1.4759 -8.0122 -3.5542 19 6 2.5704 -8.7847 -3.7006 20 8 3.4859 -8.6956 -2.9102 21 6 2.6568 -9.7595 -4.8468 22 6 3.9713 -10.4938 -4.7836 23 6 4.2253 -11.5986 -4.0533 24 6 5.5671 -11.9594 -4.2870 25 6 6.0817 -11.0615 -5.1516 26 7 5.1070 -10.1594 -5.4599 27 1 5.2053 -9.4044 -6.0608 28 6 1.3770 -7.0572 -2.4420 29 6 0.5018 -3.3053 -2.4275 30 6 0.2280 -2.3351 -1.2738 31 1 -0.4850 0.8400 -0.0004 32 1 1.0470 -4.0689 0.8301 33 1 2.7400 -3.5170 0.7493 34 1 2.3145 -5.6012 -0.6025 35 1 2.9089 -4.2399 -1.5842 36 1 -0.0196 -5.0367 -1.2563 37 1 -1.0291 -6.1246 -3.2798 38 1 -0.4393 -4.7644 -4.2645 39 1 -0.8344 -6.7514 -5.6803 40 1 0.9005 -6.3537 -5.6340 41 1 0.6388 -8.7616 -5.3313 42 1 -0.5195 -8.5004 -4.0020 43 1 2.5885 -9.2179 -5.7902 44 1 1.8370 -10.4745 -4.7781 45 1 3.5284 -12.1124 -3.4077 46 1 6.0876 -12.8008 -3.8539 47 1 7.0920 -11.0573 -5.5333 48 1 0.5805 -7.3660 -1.7649 49 1 2.3235 -7.0255 -1.9023 50 1 1.3506 -2.9475 -3.0101 51 1 -0.3788 -3.3676 -3.0669 52 1 -0.6742 -2.6418 -0.7446 53 1 0.0985 -1.3269 -1.6672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047266472.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:26 Heat of formation + Delta-G solvation = -1.460075 kcal Electronic energy + Delta-G solvation = -30891.863013 eV Core-core repulsion = 26956.097493 eV Total energy + Delta-G solvation = -3935.765521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.08759 -41.15684 -39.69553 -38.04774 -35.67577 -33.88466 -32.94709 -32.65714 -31.77876 -31.61367 -30.49472 -27.90255 -26.92381 -26.02915 -24.59965 -23.63220 -22.65729 -21.67077 -21.35106 -21.00206 -20.72155 -19.99727 -18.69753 -18.40114 -18.10978 -16.89173 -16.66047 -16.46993 -15.75175 -15.57394 -15.34162 -15.32280 -14.97503 -14.90133 -14.58382 -14.51116 -14.40463 -14.21545 -14.11593 -13.97346 -13.73112 -13.48407 -13.30982 -13.11270 -13.03931 -12.89064 -12.63489 -12.60073 -12.50239 -12.16017 -12.00321 -11.90958 -11.86055 -11.73859 -11.53790 -11.40843 -11.07791 -10.80909 -10.74773 -10.54827 -9.70705 -9.57827 -8.90688 -8.68891 -7.88939 -5.33960 1.29428 1.43904 1.44899 1.54238 1.64854 1.99636 2.25271 2.49139 2.54885 3.24188 3.59550 3.68113 3.72507 3.81092 3.93209 3.94344 4.12602 4.20603 4.21487 4.27796 4.41033 4.43894 4.46896 4.52773 4.55416 4.63074 4.66683 4.68339 4.72106 4.80147 4.86522 4.88379 4.92499 4.94070 5.01338 5.08182 5.11954 5.18531 5.28265 5.33324 5.36489 5.40479 5.43331 5.45169 5.50213 5.56106 5.59652 5.66595 5.79791 6.10386 6.24342 6.37863 6.46427 6.82040 7.13907 7.21807 7.85740 8.37114 9.16907 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002219 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.282946 B =12613.295801 C =13503.906210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.060 0.940 9 N -0.612 5.612 10 C 0.141 3.859 11 C -0.117 4.117 12 C -0.062 4.062 13 C -0.080 4.080 14 H 0.055 0.945 15 C -0.118 4.118 16 C -0.129 4.129 17 C 0.100 3.900 18 N -0.609 5.609 19 C 0.506 3.494 20 O -0.583 6.583 21 C -0.061 4.061 22 C 0.020 3.980 23 C -0.210 4.210 24 C -0.229 4.229 25 C -0.013 4.013 26 N -0.551 5.551 27 H 0.422 0.578 28 C 0.119 3.881 29 C -0.118 4.118 30 C 0.176 3.824 31 H 0.250 0.750 32 H 0.014 0.986 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.141 0.859 47 H 0.190 0.810 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.041 0.959 51 H 0.076 0.924 52 H -0.004 1.004 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 -23.882 -17.901 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.078 0.922 9 N -0.336 5.336 10 C 0.015 3.985 11 C -0.156 4.156 12 C -0.081 4.081 13 C -0.099 4.099 14 H 0.073 0.927 15 C -0.155 4.155 16 C -0.167 4.167 17 C -0.021 4.021 18 N -0.341 5.341 19 C 0.295 3.705 20 O -0.463 6.463 21 C -0.101 4.101 22 C -0.093 4.093 23 C -0.235 4.235 24 C -0.253 4.253 25 C -0.145 4.145 26 N -0.147 5.147 27 H 0.261 0.739 28 C -0.004 4.004 29 C -0.157 4.157 30 C 0.050 3.950 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.147 0.853 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.159 0.841 47 H 0.207 0.793 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.060 0.940 51 H 0.094 0.906 52 H 0.014 0.986 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.379 -23.597 -17.566 29.449 hybrid contribution 0.540 1.716 0.551 1.881 sum 1.919 -21.881 -17.014 27.784 Atomic orbital electron populations 1.70188 1.06534 1.25836 1.55382 1.25777 0.96120 1.01399 1.01343 0.85276 0.78051 0.79573 0.77622 1.21076 1.21852 1.19627 1.19491 0.92809 0.86337 1.40780 0.92193 1.44348 1.36110 1.02034 1.51100 1.21035 0.96822 0.86271 0.94330 1.21945 0.97697 0.98567 0.97360 1.20917 0.97195 0.94342 0.95653 1.21375 0.98910 0.93395 0.96212 0.92693 1.21645 0.96443 1.00525 0.96921 1.21841 1.03111 0.94327 0.97462 1.22032 0.89034 0.98408 0.92655 1.48259 1.18566 1.38527 1.28798 1.21216 0.81046 0.81381 0.86810 1.90729 1.39368 1.69434 1.46740 1.20243 0.94757 0.97307 0.97801 1.19844 0.89469 0.98747 1.01289 1.20873 0.97927 1.00001 1.04704 1.21167 0.95871 1.03485 1.04813 1.22267 0.95465 0.93162 1.03561 1.41974 1.09663 1.25081 1.37956 0.73948 1.21563 1.02076 0.87933 0.88823 1.22045 1.00542 0.95254 0.97831 1.20630 0.87515 0.97764 0.89085 0.94045 0.96775 0.93675 0.91148 0.93821 0.91618 0.91037 0.91549 0.88005 0.92073 0.86678 0.89624 0.85346 0.84102 0.85151 0.84109 0.79296 0.90874 0.91523 0.94044 0.90601 0.98561 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 11.19 21.65 0.24 -56.02 16 2 C -0.05 -2.93 4.91 84.86 0.42 -2.52 16 3 Si 0.97 46.09 29.59 68.60 2.03 48.12 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.26 -15.18 9.58 84.03 0.81 -14.37 16 8 H 0.06 3.42 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -32.16 2.99 -699.07 -2.09 -34.25 16 10 C 0.14 6.23 6.52 86.37 0.56 6.80 16 11 C -0.12 -4.19 5.05 30.67 0.15 -4.04 16 12 C -0.06 -1.95 1.74 -10.77 -0.02 -1.97 16 13 C -0.08 -1.93 1.92 -10.72 -0.02 -1.95 16 14 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 15 C -0.12 -2.14 4.86 30.62 0.15 -1.99 16 16 C -0.13 -1.47 6.06 30.53 0.19 -1.29 16 17 C 0.10 0.97 6.31 86.22 0.54 1.52 16 18 N -0.61 -11.32 2.98 -819.72 -2.44 -13.76 16 19 C 0.51 11.08 7.69 87.66 0.67 11.76 16 20 O -0.58 -19.29 15.45 -3.02 -0.05 -19.33 16 21 C -0.06 -0.79 4.59 29.10 0.13 -0.65 16 22 C 0.02 0.38 5.66 41.08 0.23 0.61 16 23 C -0.21 -4.60 10.76 22.14 0.24 -4.37 16 24 C -0.23 -4.67 10.86 22.14 0.24 -4.43 16 25 C -0.01 -0.22 11.94 83.22 0.99 0.78 16 26 N -0.55 -8.97 6.07 -182.76 -1.11 -10.08 16 27 H 0.42 4.55 8.96 -92.71 -0.83 3.72 16 28 C 0.12 2.83 5.19 86.36 0.45 3.28 16 29 C -0.12 -4.35 5.05 30.68 0.15 -4.19 16 30 C 0.18 8.62 5.31 86.37 0.46 9.08 16 31 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.04 2.00 7.93 -2.39 -0.02 1.98 16 34 H 0.07 2.26 6.49 -2.39 -0.02 2.25 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.32 6.33 -2.39 -0.02 1.30 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.12 0.39 5.93 -2.39 -0.01 0.38 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.13 0.83 7.68 -2.39 -0.02 0.81 16 44 H 0.14 1.03 7.95 -2.39 -0.02 1.01 16 45 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 46 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 47 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.07 2.00 5.59 -2.39 -0.01 1.98 16 50 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 51 H 0.08 2.40 6.34 -2.39 -0.02 2.38 16 52 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 53 H 0.05 2.86 6.04 -2.39 -0.01 2.84 16 Total: -1.00 -78.87 402.78 3.00 -75.87 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.07 Total: 17.42 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 6.35 Total: -7.95 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -5.40 Total: -114.12 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -78.87 3.00 -75.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047266472.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.414 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds