Wall clock time and date at job start Wed Apr 1 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40449 * 126.82116 * 2 1 4 4 C 1.30713 * 106.78879 * 180.15587 * 3 2 1 5 5 C 1.50706 * 125.52495 * 179.85715 * 4 3 2 6 6 C 1.53000 * 117.49681 * 299.69290 * 5 4 3 7 7 C 1.53002 * 60.02940 * 107.47810 * 6 5 4 8 8 N 1.33244 * 108.94870 * 359.59308 * 4 3 2 9 9 C 1.30829 * 109.82768 * 0.26766 * 8 4 3 10 10 C 1.50698 * 125.95952 * 179.97438 * 9 8 4 11 11 C 1.50699 * 109.47359 * 90.02061 * 10 9 8 12 12 O 1.21282 * 119.99754 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00380 * 179.97438 * 11 10 9 14 14 C 1.46746 * 125.32562 * 359.69072 * 13 11 10 15 15 C 1.54108 * 106.62622 * 161.56202 * 14 13 11 16 16 H 1.08999 * 113.48776 * 151.38165 * 15 14 13 17 17 C 1.53960 * 109.46089 * 278.66078 * 15 14 13 18 18 N 1.46783 * 106.62703 * 138.17488 * 17 15 14 19 19 C 1.36942 * 125.33769 * 161.47982 * 18 17 15 20 20 H 1.08006 * 119.99889 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99837 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00127 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99831 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47467 * 60.00056 * 23 21 19 25 25 H 1.48506 * 109.47231 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47058 * 299.99909 * 23 21 19 27 27 C 1.46665 * 109.32453 * 341.48052 * 18 17 15 28 28 C 1.53728 * 107.94292 * 0.54802 * 27 18 17 29 29 H 1.08995 * 113.06017 * 139.99399 * 28 27 18 30 30 C 1.46643 * 125.33067 * 180.02562 * 13 11 10 31 31 H 1.08999 * 109.47346 * 270.29372 * 1 2 3 32 32 H 1.09003 * 109.47002 * 30.29435 * 1 2 3 33 33 H 1.09001 * 109.47060 * 150.29448 * 1 2 3 34 34 H 1.08999 * 115.54993 * 154.02482 * 5 4 3 35 35 H 1.09002 * 117.49833 * 214.97915 * 6 5 4 36 36 H 1.09002 * 117.49953 * 359.97438 * 6 5 4 37 37 H 1.09000 * 117.49996 * 107.50493 * 7 6 5 38 38 H 1.08999 * 117.49664 * 252.51862 * 7 6 5 39 39 H 1.08999 * 109.46943 * 210.01865 * 10 9 8 40 40 H 1.08998 * 109.47565 * 330.02247 * 10 9 8 41 41 H 1.08997 * 110.01295 * 280.99928 * 14 13 11 42 42 H 1.08998 * 110.00544 * 42.37205 * 14 13 11 43 43 H 1.09002 * 110.02566 * 257.46578 * 17 15 14 44 44 H 1.09001 * 110.03148 * 18.88338 * 17 15 14 45 45 H 0.97006 * 119.99927 * 180.02562 * 22 21 19 46 46 H 1.08990 * 109.77589 * 240.92290 * 27 18 17 47 47 H 1.09004 * 109.77003 * 120.16503 * 27 18 17 48 48 H 1.09004 * 109.75818 * 300.45494 * 30 13 11 49 49 H 1.08997 * 109.75958 * 61.17197 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0034 5 6 4.7776 1.5289 -0.0078 6 6 4.9764 2.4820 -1.1880 7 6 4.6011 3.0368 0.1876 8 7 3.5096 -0.6556 0.0034 9 6 2.2707 -1.0761 0.0055 10 6 1.8247 -2.5155 0.0123 11 6 1.6757 -2.9886 1.4354 12 8 1.9091 -2.2314 2.3536 13 7 1.2830 -4.2529 1.6877 14 6 0.9649 -5.2616 0.6704 15 6 1.0301 -6.6319 1.3726 16 1 0.3744 -7.3799 0.9271 17 6 2.4963 -7.0931 1.4619 18 7 2.6751 -7.6672 2.8010 19 6 3.6930 -8.5036 3.1747 20 1 4.4479 -8.7897 2.4572 21 6 3.7552 -8.9828 4.4760 22 7 2.8356 -8.6337 5.3504 23 14 5.1441 -10.1231 4.9860 24 1 6.4457 -9.4342 4.7948 25 1 4.9832 -10.4905 6.4159 26 1 5.1071 -11.3516 4.1526 27 6 1.5927 -7.2046 3.6759 28 6 0.6681 -6.2984 2.8468 29 1 -0.3885 -6.4516 3.0662 30 6 1.1000 -4.8339 3.0216 31 1 -0.3634 0.0053 1.0276 32 1 -0.3633 0.8874 -0.5184 33 1 -0.3633 -0.8926 -0.5093 34 1 5.6667 1.0660 0.4206 35 1 5.9963 2.6465 -1.5359 36 1 4.2085 2.4923 -1.9615 37 1 5.3739 3.5663 0.7447 38 1 3.5861 3.4117 0.3192 39 1 0.8672 -2.6016 -0.5013 40 1 2.5674 -3.1285 -0.4983 41 1 -0.0361 -5.0896 0.2748 42 1 1.6971 -5.2217 -0.1360 43 1 2.6969 -7.8485 0.7021 44 1 3.1642 -6.2422 1.3284 45 1 2.8792 -8.9683 6.2599 46 1 2.0088 -6.6414 4.5111 47 1 1.0309 -8.0600 4.0512 48 1 2.0384 -4.7900 3.5745 49 1 0.3286 -4.2838 3.5605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049226027.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:06 Heat of formation + Delta-G solvation = 118.896205 kcal Electronic energy + Delta-G solvation = -30316.555075 eV Core-core repulsion = 26282.468251 eV Total energy + Delta-G solvation = -4034.086824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31591 -40.28568 -38.32857 -37.39366 -35.05479 -34.07293 -32.87847 -32.19516 -30.43676 -29.75438 -28.94419 -27.49040 -25.55992 -25.42363 -23.91979 -23.09359 -22.61515 -21.06380 -20.23716 -20.10897 -19.46515 -19.13060 -17.47090 -17.21939 -16.70392 -16.18858 -15.96255 -15.70100 -15.25820 -14.82225 -14.71797 -14.67074 -13.91997 -13.74237 -13.68969 -13.48428 -13.30655 -13.06080 -12.87914 -12.38537 -12.29629 -12.14378 -11.88924 -11.84369 -11.75727 -11.70123 -11.48298 -11.09843 -10.93681 -10.80343 -10.75375 -10.42386 -10.16988 -10.07250 -10.05032 -9.99763 -9.94031 -9.70636 -9.69228 -9.30178 -8.63761 -8.48366 -6.86141 -5.74375 -3.07955 1.39478 2.09858 2.56733 2.59918 3.09755 3.40248 3.44838 3.45764 3.63126 3.76160 4.16157 4.25326 4.44561 4.46802 4.57850 4.62737 4.69388 4.74885 4.83999 4.94100 4.97861 5.06674 5.13012 5.17743 5.37603 5.38655 5.39067 5.49248 5.54062 5.56793 5.63036 5.72329 5.85917 5.88116 5.91558 6.05718 6.17687 6.20492 6.28210 6.31733 6.42329 6.56535 6.61826 6.63979 6.79132 7.48413 7.53183 7.58631 7.77840 8.02306 8.14389 8.23957 9.19927 9.80332 10.43469 11.37306 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.002366 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.225006 B =11833.431336 C =12876.144636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.374 5.374 3 N -0.316 5.316 4 C 0.256 3.744 5 C -0.070 4.070 6 C -0.159 4.159 7 C -0.161 4.161 8 N -0.524 5.524 9 C 0.305 3.695 10 C -0.062 4.062 11 C 0.532 3.468 12 O -0.531 6.531 13 N -0.605 5.605 14 C 0.106 3.894 15 C -0.109 4.109 16 H 0.100 0.900 17 C 0.143 3.857 18 N -0.602 5.602 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.187 3.813 28 C -0.122 4.122 29 H 0.089 0.911 30 C 0.120 3.880 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.018 0.982 45 H 0.253 0.747 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.077 0.923 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 16.794 -15.338 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 N -0.145 5.145 4 C -0.025 4.025 5 C -0.091 4.091 6 C -0.198 4.198 7 C -0.199 4.199 8 N -0.251 5.251 9 C 0.028 3.972 10 C -0.104 4.104 11 C 0.317 3.683 12 O -0.408 6.408 13 N -0.339 5.339 14 C -0.017 4.017 15 C -0.129 4.129 16 H 0.118 0.882 17 C 0.017 3.983 18 N -0.328 5.328 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.062 3.938 28 C -0.142 4.142 29 H 0.107 0.893 30 C -0.002 4.002 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.053 17.707 -14.637 24.032 hybrid contribution 0.388 -0.953 0.399 1.103 sum -6.665 16.755 -14.238 22.976 Atomic orbital electron populations 1.21952 0.73941 1.04567 1.04184 1.50057 1.07731 1.03759 1.54826 1.77897 1.01332 1.07394 1.27860 1.23031 0.92384 0.89196 0.97919 1.20069 0.93544 0.89905 1.05537 1.23020 1.03123 1.01922 0.91694 1.23038 1.03748 0.93715 0.99377 1.70239 1.19375 1.10838 1.24643 1.23283 0.86114 0.91348 0.96490 1.20163 1.04788 0.88282 0.97153 1.19606 0.77613 0.80955 0.90084 1.90773 1.49755 1.53874 1.46376 1.48206 1.66289 1.10370 1.09033 1.22070 1.00154 0.88210 0.91301 1.22966 0.99649 0.94766 0.95506 0.88154 1.21259 0.91637 0.95902 0.89492 1.44205 1.28443 1.55016 1.05184 1.18993 1.01877 1.19886 0.95071 0.90436 1.24797 0.98757 1.00632 0.96135 1.69930 1.34833 1.48180 1.04077 0.86183 0.81547 0.80495 0.77440 1.21125 1.21584 1.21145 1.21041 0.87284 0.94661 0.90847 1.23151 1.00736 0.94025 0.96310 0.89279 1.22007 1.01771 0.93091 0.83322 0.89984 0.88877 0.89151 0.85059 0.87767 0.88665 0.87859 0.87917 0.86764 0.84963 0.91562 0.90666 0.94601 0.96424 0.93618 0.93269 0.93291 0.90486 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 11.33 59.85 0.68 1.42 16 2 N -0.37 -4.77 4.04 -65.10 -0.26 -5.03 16 3 N -0.32 -4.58 12.24 32.43 0.40 -4.18 16 4 C 0.26 3.79 7.69 -156.85 -1.21 2.59 16 5 C -0.07 -0.80 6.33 -91.73 -0.58 -1.38 16 6 C -0.16 -1.37 10.23 -26.73 -0.27 -1.65 16 7 C -0.16 -1.46 10.14 -26.69 -0.27 -1.73 16 8 N -0.52 -8.46 11.19 -8.16 -0.09 -8.55 16 9 C 0.30 4.23 6.48 -155.70 -1.01 3.22 16 10 C -0.06 -0.66 5.05 -29.04 -0.15 -0.81 16 11 C 0.53 7.95 7.83 -10.99 -0.09 7.86 16 12 O -0.53 -10.41 16.34 5.56 0.09 -10.32 16 13 N -0.61 -8.69 3.30 -172.27 -0.57 -9.26 16 14 C 0.11 1.19 5.77 -3.33 -0.02 1.17 16 15 C -0.11 -1.59 4.16 -88.26 -0.37 -1.96 16 16 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 17 C 0.14 2.75 6.49 -3.39 -0.02 2.73 16 18 N -0.60 -14.80 3.38 -171.84 -0.58 -15.38 16 19 C -0.23 -6.31 10.25 -15.06 -0.15 -6.46 16 20 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 21 C -0.01 -0.19 5.48 -17.44 -0.10 -0.29 16 22 N -0.92 -26.68 10.25 55.49 0.57 -26.12 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.19 4.28 4.77 -3.57 -0.02 4.26 16 28 C -0.12 -2.05 4.01 -88.60 -0.36 -2.40 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 C 0.12 2.02 6.22 -3.61 -0.02 1.99 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.42 7.11 -51.93 -0.37 0.05 16 34 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 39 H 0.11 0.73 7.13 -51.93 -0.37 0.36 16 40 H 0.13 1.26 7.88 -51.93 -0.41 0.85 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.72 7.43 -51.93 -0.39 0.33 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.05 1.28 6.73 -51.93 -0.35 0.93 16 47 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 48 H 0.08 1.58 7.29 -51.93 -0.38 1.20 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -36.96 396.09 -11.10 -48.06 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.65 Total: -0.75 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -3.95 Total: 8.57 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -0.54 Total: -68.52 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.96 -11.10 -48.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049226027.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.953 kcal (2) G-P(sol) polarization free energy of solvation -36.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds