Wall clock time and date at job start Wed Apr 1 2020 03:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00251 * 2 1 4 4 C 1.38402 * 119.99905 * 179.97438 * 2 1 3 5 5 C 1.39889 * 120.00002 * 5.00537 * 4 2 1 6 6 N 1.31454 * 120.01804 * 179.70294 * 5 4 2 7 7 C 1.33279 * 120.00491 * 0.27448 * 6 5 4 8 8 C 1.47820 * 120.00227 * 179.97438 * 7 6 5 9 9 O 1.21555 * 120.00422 * 171.14504 * 8 7 6 10 10 N 1.34785 * 119.99951 * 351.14529 * 8 7 6 11 11 C 1.45733 * 117.76302 * 178.73912 * 10 8 7 12 12 C 1.53042 * 109.55828 * 141.08178 * 11 10 8 13 13 C 1.52939 * 108.49571 * 53.79995 * 12 11 10 14 14 C 1.52932 * 109.79328 * 294.01020 * 13 12 11 15 15 H 1.08993 * 110.51011 * 292.89305 * 14 13 12 16 16 C 1.44191 * 117.75791 * 358.47799 * 10 8 7 17 17 H 1.09000 * 109.22713 * 333.40899 * 16 10 8 18 18 C 1.54563 * 111.48111 * 93.66162 * 16 10 8 19 19 C 1.54053 * 103.67159 * 153.28279 * 18 16 10 20 20 N 1.46884 * 107.70855 * 342.84596 * 19 18 16 21 21 C 1.36933 * 125.58299 * 177.00146 * 20 19 18 22 22 H 1.08002 * 119.99922 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00343 * 0.02833 * 21 20 19 24 24 N 1.31621 * 119.99897 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00480 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47028 * 59.99931 * 25 23 21 27 27 H 1.48501 * 109.47272 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46890 * 299.99884 * 25 23 21 29 29 C 1.39409 * 119.99922 * 359.97438 * 7 6 5 30 30 N 1.32047 * 119.98550 * 0.02562 * 29 7 6 31 31 H 1.08998 * 109.47036 * 270.00114 * 1 2 3 32 32 H 1.09001 * 109.46969 * 30.00620 * 1 2 3 33 33 H 1.09005 * 109.46994 * 149.99947 * 1 2 3 34 34 H 1.08996 * 109.47050 * 269.99730 * 3 2 1 35 35 H 1.08996 * 109.46861 * 29.99879 * 3 2 1 36 36 H 1.09000 * 109.47367 * 149.99881 * 3 2 1 37 37 H 1.08005 * 119.99174 * 359.97438 * 5 4 2 38 38 H 1.09003 * 109.45412 * 261.11063 * 11 10 8 39 39 H 1.09005 * 109.45466 * 21.07267 * 11 10 8 40 40 H 1.08999 * 109.63475 * 173.50359 * 12 11 10 41 41 H 1.09002 * 109.63599 * 294.10069 * 12 11 10 42 42 H 1.09000 * 109.41993 * 54.11129 * 13 12 11 43 43 H 1.09001 * 109.42191 * 173.91160 * 13 12 11 44 44 H 1.09004 * 110.62174 * 34.73453 * 18 16 10 45 45 H 1.08998 * 110.59093 * 271.82090 * 18 16 10 46 46 H 1.09004 * 109.81049 * 223.29938 * 19 18 16 47 47 H 1.08997 * 109.81289 * 102.39647 * 19 18 16 48 48 H 0.96999 * 120.00013 * 179.97438 * 24 23 21 49 49 H 1.07994 * 120.00849 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4078 -0.1046 6 7 2.1188 -3.5462 -0.1100 7 6 3.4478 -3.5489 -0.0098 8 6 4.1869 -4.8291 -0.0153 9 8 5.4004 -4.8301 -0.0864 10 7 3.5153 -5.9953 0.0585 11 6 4.2905 -7.2287 0.0210 12 6 3.6872 -8.2429 0.9956 13 6 2.2018 -8.4048 0.6694 14 6 1.4627 -7.0975 0.9582 15 1 1.4567 -6.8906 2.0283 16 6 2.0792 -5.9370 0.1749 17 1 1.7951 -4.9956 0.6451 18 6 1.3951 -6.0291 -1.2080 19 6 0.0131 -6.6317 -0.8911 20 7 0.0835 -7.2312 0.4479 21 6 -0.9593 -7.8175 1.1143 22 1 -0.8059 -8.2312 2.1000 23 6 -2.2135 -7.8801 0.5228 24 7 -2.4006 -7.3755 -0.6784 25 14 -3.6362 -8.6793 1.4320 26 1 -3.8766 -7.9574 2.7072 27 1 -4.8581 -8.6187 0.5903 28 1 -3.3046 -10.0977 1.7210 29 6 4.1410 -2.3444 0.1002 30 7 3.4805 -1.2010 0.1057 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5139 34 1 2.3793 1.5833 -1.0276 35 1 1.6085 2.0283 0.5138 36 1 3.1500 1.1384 0.5138 37 1 0.3845 -2.4059 -0.1858 38 1 4.2710 -7.6393 -0.9885 39 1 5.3210 -7.0187 0.3078 40 1 4.1930 -9.2021 0.8856 41 1 3.8004 -7.8810 2.0175 42 1 2.0879 -8.6604 -0.3841 43 1 1.7810 -9.2020 1.2821 44 1 1.9568 -6.6870 -1.8712 45 1 1.2888 -5.0384 -1.6498 46 1 -0.2332 -7.3978 -1.6264 47 1 -0.7439 -5.8476 -0.9055 48 1 -3.2769 -7.4196 -1.0918 49 1 5.2179 -2.3464 0.1819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049474364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:57 Heat of formation + Delta-G solvation = 90.498516 kcal Electronic energy + Delta-G solvation = -31896.603335 eV Core-core repulsion = 27861.285095 eV Total energy + Delta-G solvation = -4035.318240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.46330 -39.95244 -37.96794 -37.13871 -34.99211 -34.40253 -32.68439 -32.01514 -30.89383 -28.88155 -28.72495 -28.26290 -26.50666 -24.54638 -24.45368 -24.09826 -22.60273 -21.76216 -20.71888 -19.87720 -18.58628 -18.04671 -17.59804 -16.99941 -16.50092 -15.85571 -15.83183 -15.21624 -14.97740 -14.77971 -14.70356 -14.58978 -14.06657 -13.97236 -13.59875 -13.38761 -13.20086 -12.91042 -12.85739 -12.64533 -12.40947 -12.31753 -12.19716 -11.86658 -11.58369 -11.30065 -11.03134 -10.92947 -10.73931 -10.63903 -10.55649 -10.38486 -10.22858 -10.09724 -10.02487 -9.76985 -9.57817 -9.53154 -8.66308 -8.53606 -8.19257 -7.87771 -6.79936 -5.67675 -3.01331 0.63431 1.10932 2.48789 2.89105 3.25943 3.41091 3.45921 3.46543 3.85368 4.13594 4.18061 4.30842 4.50490 4.76254 4.83080 4.92093 5.00733 5.14255 5.24351 5.30001 5.33021 5.35408 5.42813 5.51446 5.54324 5.56203 5.58949 5.72600 5.75512 5.91545 5.98216 6.18077 6.21418 6.27220 6.40835 6.42395 6.44587 6.51397 6.68675 6.75972 6.82642 6.96329 7.07836 7.17939 7.33147 7.61826 7.63431 7.73192 7.81984 7.88741 8.29549 8.38339 9.25690 9.85497 10.51892 11.42843 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009722 B = 0.004176 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.379920 B = 6703.349067 C = 9124.188146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.600 5.600 3 C 0.093 3.907 4 C 0.371 3.629 5 C -0.009 4.009 6 N -0.347 5.347 7 C -0.051 4.051 8 C 0.574 3.426 9 O -0.553 6.553 10 N -0.566 5.566 11 C 0.113 3.887 12 C -0.130 4.130 13 C -0.132 4.132 14 C 0.159 3.841 15 H 0.050 0.950 16 C 0.113 3.887 17 H 0.135 0.865 18 C -0.140 4.140 19 C 0.183 3.817 20 N -0.594 5.594 21 C -0.224 4.224 22 H 0.076 0.924 23 C -0.006 4.006 24 N -0.921 5.921 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.168 3.832 30 N -0.512 5.512 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.174 0.826 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.050 0.950 48 H 0.251 0.749 49 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 14.061 0.631 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.312 5.312 3 C -0.050 4.050 4 C 0.131 3.869 5 C -0.181 4.181 6 N -0.063 5.063 7 C -0.191 4.191 8 C 0.361 3.639 9 O -0.432 6.432 10 N -0.295 5.295 11 C -0.010 4.010 12 C -0.169 4.169 13 C -0.172 4.172 14 C 0.050 3.950 15 H 0.068 0.932 16 C 0.008 3.992 17 H 0.151 0.849 18 C -0.180 4.180 19 C 0.058 3.942 20 N -0.319 5.319 21 C -0.352 4.352 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.568 5.568 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.007 3.993 30 N -0.234 5.234 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.191 0.809 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.467 14.137 0.541 17.023 hybrid contribution -1.053 -0.529 0.332 1.225 sum 8.413 13.608 0.873 16.023 Atomic orbital electron populations 1.21909 0.77392 1.03905 1.02486 1.46213 1.05769 1.02972 1.76272 1.21684 0.97843 0.83735 1.01713 1.19642 0.89813 0.87571 0.89861 1.23554 1.02041 0.86684 1.05792 1.68841 1.07181 1.26325 1.03976 1.21698 0.90899 0.95568 1.10922 1.17673 0.86258 0.83011 0.76962 1.90730 1.12909 1.87076 1.52504 1.47041 1.07798 1.05228 1.69423 1.21374 0.95759 0.84124 0.99702 1.21837 0.97774 0.98243 0.99043 1.22143 0.92755 1.00430 1.01910 1.20908 0.86461 0.91640 0.95999 0.93175 1.22233 0.76674 1.01964 0.98281 0.84901 1.22979 0.98809 1.00277 0.95927 1.21002 0.90504 0.96172 0.86495 1.44484 1.03601 1.68023 1.15750 1.18971 0.87215 1.30174 0.98881 0.90638 1.24755 0.97433 1.01225 0.96825 1.69972 1.22121 1.50253 1.14468 0.86246 0.82031 0.79160 0.78585 1.21265 1.21682 1.21280 1.23391 1.01304 0.85924 0.88701 1.68084 1.06317 1.29488 1.19527 0.92024 0.90410 0.90160 0.92962 0.91392 0.89987 0.80946 0.92085 0.89478 0.91223 0.91882 0.92067 0.92116 0.93395 0.91668 0.94665 0.93134 0.93834 0.80431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.28 59.85 0.62 1.19 16 2 N -0.60 -5.60 3.37 -189.51 -0.64 -6.24 16 3 C 0.09 0.68 10.50 59.85 0.63 1.31 16 4 C 0.37 4.53 7.37 -155.00 -1.14 3.39 16 5 C -0.01 -0.12 10.42 -17.10 -0.18 -0.30 16 6 N -0.35 -5.41 4.55 -9.44 -0.04 -5.45 16 7 C -0.05 -0.80 6.51 -82.88 -0.54 -1.34 16 8 C 0.57 9.74 7.56 -12.34 -0.09 9.65 16 9 O -0.55 -10.01 15.58 5.32 0.08 -9.93 16 10 N -0.57 -9.63 2.79 -168.53 -0.47 -10.10 16 11 C 0.11 1.72 6.26 -4.43 -0.03 1.70 16 12 C -0.13 -1.93 6.10 -26.74 -0.16 -2.09 16 13 C -0.13 -2.44 5.31 -26.80 -0.14 -2.58 16 14 C 0.16 3.26 3.27 -67.34 -0.22 3.04 16 15 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 16 C 0.11 2.09 2.29 -68.35 -0.16 1.94 16 17 H 0.13 2.54 4.50 -78.71 -0.35 2.19 16 18 C -0.14 -2.76 6.15 -25.36 -0.16 -2.91 16 19 C 0.18 4.39 5.39 -3.28 -0.02 4.37 16 20 N -0.59 -14.67 2.93 -163.89 -0.48 -15.15 16 21 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -26.35 10.29 55.49 0.57 -25.78 16 25 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 C 0.17 2.29 10.76 -17.02 -0.18 2.11 16 30 N -0.51 -6.67 9.22 -11.96 -0.11 -6.78 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 33 H 0.08 0.54 5.98 -51.93 -0.31 0.23 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 36 H 0.08 0.69 7.30 -51.93 -0.38 0.31 16 37 H 0.17 1.97 6.03 -52.48 -0.32 1.66 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.30 6.95 -51.93 -0.36 0.93 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.22 6.84 -51.93 -0.36 0.87 16 46 H 0.04 0.94 7.60 -51.93 -0.39 0.55 16 47 H 0.05 1.32 7.25 -51.93 -0.38 0.95 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.18 2.14 7.66 -52.49 -0.40 1.74 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -31.91 379.09 -9.86 -41.77 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.43 Total: 2.27 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: -2.03 Total: 12.98 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.17 Total: -69.51 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.91 -9.86 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049474364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.271 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds