Wall clock time and date at job start Wed Apr 1 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99847 * 2 1 4 4 C 1.38398 * 120.00072 * 180.02562 * 2 1 3 5 5 C 1.39891 * 119.99686 * 5.01799 * 4 2 1 6 6 N 1.31453 * 120.01297 * 179.76598 * 5 4 2 7 7 C 1.33278 * 120.01022 * 0.47146 * 6 5 4 8 8 C 1.47815 * 120.00455 * 179.78643 * 7 6 5 9 9 O 1.21565 * 119.99897 * 171.31205 * 8 7 6 10 10 N 1.34773 * 120.00331 * 351.31457 * 8 7 6 11 11 C 1.47853 * 122.22158 * 351.31190 * 10 8 7 12 12 C 1.52721 * 111.06444 * 232.50759 * 11 10 8 13 13 C 1.53873 * 111.51868 * 311.46774 * 12 11 10 14 14 C 1.50814 * 107.41269 * 56.70489 * 13 12 11 15 15 H 1.09006 * 107.80174 * 51.24106 * 14 13 12 16 16 C 1.45720 * 122.23164 * 171.33525 * 10 8 7 17 17 H 1.09001 * 111.07198 * 241.38035 * 16 10 8 18 18 C 1.53432 * 116.36909 * 9.88510 * 16 10 8 19 19 C 1.55462 * 101.67502 * 152.72045 * 18 16 10 20 20 N 1.45030 * 119.37715 * 175.78744 * 14 13 12 21 21 C 1.36929 * 126.55919 * 331.79170 * 20 14 13 22 22 H 1.07996 * 120.00592 * 359.71098 * 21 20 14 23 23 C 1.38815 * 119.99987 * 179.70804 * 21 20 14 24 24 N 1.31622 * 119.99637 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00246 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47113 * 180.02562 * 25 23 21 27 27 H 1.48499 * 109.47082 * 300.00129 * 25 23 21 28 28 H 1.48500 * 109.47019 * 60.00087 * 25 23 21 29 29 C 1.39417 * 119.99628 * 359.50685 * 7 6 5 30 30 N 1.32051 * 119.98077 * 0.25674 * 29 7 6 31 31 H 1.08999 * 109.47341 * 269.99776 * 1 2 3 32 32 H 1.09001 * 109.47303 * 30.00059 * 1 2 3 33 33 H 1.08994 * 109.47350 * 149.99648 * 1 2 3 34 34 H 1.08998 * 109.47260 * 270.00223 * 3 2 1 35 35 H 1.08997 * 109.47294 * 30.00414 * 3 2 1 36 36 H 1.08999 * 109.46806 * 150.00287 * 3 2 1 37 37 H 1.08003 * 119.99125 * 0.02562 * 5 4 2 38 38 H 1.08996 * 109.16601 * 352.91805 * 11 10 8 39 39 H 1.09006 * 109.15979 * 112.15333 * 11 10 8 40 40 H 1.08998 * 109.07071 * 71.98674 * 12 11 10 41 41 H 1.08994 * 109.07308 * 191.01100 * 12 11 10 42 42 H 1.08994 * 109.88366 * 176.38813 * 13 12 11 43 43 H 1.09008 * 109.88132 * 297.39401 * 13 12 11 44 44 H 1.09004 * 110.98250 * 34.62180 * 18 16 10 45 45 H 1.08998 * 110.98495 * 270.81840 * 18 16 10 46 46 H 1.09002 * 109.96047 * 218.02431 * 19 18 16 47 47 H 1.08998 * 109.96573 * 96.78001 * 19 18 16 48 48 H 0.96999 * 119.99685 * 180.02562 * 24 23 21 49 49 H 1.07996 * 120.00993 * 180.27772 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1570 -1.1986 -0.0005 5 6 1.4615 -2.4077 -0.1070 6 7 2.1188 -3.5460 -0.1122 7 6 3.4474 -3.5491 -0.0065 8 6 4.1860 -4.8295 -0.0076 9 8 5.4000 -4.8308 -0.0707 10 7 3.5136 -5.9955 0.0613 11 6 2.0604 -6.0530 0.3277 12 6 1.7524 -6.9931 1.4911 13 6 2.4699 -8.3448 1.3297 14 6 3.9455 -8.0602 1.2029 15 1 4.2328 -7.4145 2.0329 16 6 4.1704 -7.2834 -0.1214 17 1 3.7591 -7.8149 -0.9796 18 6 5.7040 -7.2663 -0.1638 19 6 6.0489 -8.6929 0.3487 20 7 4.8798 -9.1670 1.1300 21 6 4.7124 -10.4128 1.6730 22 1 3.8136 -10.6452 2.2247 23 6 5.6981 -11.3773 1.5142 24 7 6.7938 -11.0940 0.8421 25 14 5.4701 -13.0767 2.2555 26 1 6.6566 -13.9146 1.9468 27 1 5.3181 -12.9581 3.7279 28 1 4.2547 -13.7081 1.6817 29 6 4.1410 -2.3444 0.0992 30 7 3.4808 -1.2007 0.0997 31 1 -0.3634 0.0000 1.0276 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5139 34 1 2.3791 1.5835 -1.0276 35 1 1.6084 2.0284 0.5139 36 1 3.1499 1.1384 0.5138 37 1 0.3846 -2.4056 -0.1893 38 1 1.7014 -5.0530 0.5712 39 1 1.5468 -6.4097 -0.5652 40 1 2.0767 -6.5268 2.4214 41 1 0.6770 -7.1650 1.5351 42 1 2.2838 -8.9698 2.2030 43 1 2.1138 -8.8484 0.4309 44 1 6.1045 -6.5039 0.5045 45 1 6.0648 -7.1194 -1.1818 46 1 6.9322 -8.6559 0.9863 47 1 6.2268 -9.3588 -0.4957 48 1 7.4824 -11.7680 0.7309 49 1 5.2179 -2.3464 0.1803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049474365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:00 Heat of formation + Delta-G solvation = 91.665927 kcal Electronic energy + Delta-G solvation = -31104.485148 eV Core-core repulsion = 27069.217531 eV Total energy + Delta-G solvation = -4035.267618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.52285 -39.98668 -37.86502 -37.13762 -35.41624 -34.30409 -32.51140 -32.11460 -31.06713 -28.95286 -28.84867 -28.05447 -26.66556 -24.59997 -24.44938 -24.28808 -22.61343 -21.33252 -21.01774 -19.78327 -19.26426 -18.03847 -17.82628 -16.80343 -16.37778 -16.09711 -15.38684 -15.34273 -15.17791 -14.87212 -14.72603 -14.55147 -14.32079 -13.92938 -13.80977 -13.41059 -13.18678 -13.08171 -12.91329 -12.74285 -12.55294 -12.35881 -12.19028 -11.90726 -11.68758 -11.62203 -11.33331 -10.88117 -10.77835 -10.58670 -10.43430 -10.36560 -10.27581 -10.03290 -9.89353 -9.74478 -9.52693 -9.35122 -8.78400 -8.49249 -8.22901 -7.99935 -6.74096 -5.62472 -2.96197 0.47860 0.88220 2.28601 2.85796 3.21760 3.45553 3.49570 3.51080 3.73207 3.91438 3.99046 4.09790 4.55248 4.56720 4.62950 4.76697 4.77219 4.96125 5.04738 5.10908 5.13706 5.26452 5.36700 5.38530 5.48782 5.55635 5.64150 5.72129 5.78375 5.87167 5.97850 6.16308 6.19074 6.20702 6.28181 6.42780 6.46684 6.55291 6.61356 6.68702 6.84488 6.89005 7.00958 7.10600 7.31714 7.53419 7.66405 7.74911 7.82688 7.92787 8.33317 8.46013 9.27381 9.91172 10.60348 11.49564 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.028205 B = 0.002472 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.478091 B =11322.997785 C =12070.642235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.602 5.602 3 C 0.092 3.908 4 C 0.368 3.632 5 C -0.014 4.014 6 N -0.366 5.366 7 C -0.039 4.039 8 C 0.581 3.419 9 O -0.530 6.530 10 N -0.579 5.579 11 C 0.089 3.911 12 C -0.130 4.130 13 C -0.117 4.117 14 C 0.160 3.840 15 H 0.016 0.984 16 C 0.116 3.884 17 H 0.080 0.920 18 C -0.137 4.137 19 C 0.173 3.827 20 N -0.592 5.592 21 C -0.224 4.224 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.910 3.090 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.286 1.286 29 C 0.171 3.829 30 N -0.507 5.507 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.171 0.829 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.039 0.961 47 H 0.055 0.945 48 H 0.252 0.748 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.595 24.692 -2.912 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.314 5.314 3 C -0.051 4.051 4 C 0.129 3.871 5 C -0.185 4.185 6 N -0.082 5.082 7 C -0.180 4.180 8 C 0.367 3.633 9 O -0.407 6.407 10 N -0.310 5.310 11 C -0.034 4.034 12 C -0.168 4.168 13 C -0.155 4.155 14 C 0.051 3.949 15 H 0.033 0.967 16 C 0.012 3.988 17 H 0.098 0.902 18 C -0.176 4.176 19 C 0.049 3.951 20 N -0.317 5.317 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.212 1.212 29 C 0.009 3.991 30 N -0.230 5.230 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.188 0.812 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.851 24.637 -2.935 28.917 hybrid contribution -0.298 -0.965 0.349 1.069 sum -15.149 23.672 -2.586 28.223 Atomic orbital electron populations 1.21863 0.77658 1.03672 1.02282 1.46194 1.05639 1.03075 1.76474 1.21703 0.97939 0.83573 1.01837 1.19600 0.89898 0.87497 0.90143 1.23350 1.01542 0.86932 1.06726 1.68278 1.07865 1.26967 1.05093 1.21950 0.90442 0.96088 1.09486 1.17467 0.86284 0.82137 0.77378 1.90782 1.12485 1.86219 1.51201 1.47769 1.09778 1.05256 1.68195 1.22562 0.79597 1.03362 0.97833 1.21950 1.00100 0.96241 0.98555 1.21411 0.96240 0.95754 1.02137 1.20609 0.90158 0.90225 0.93903 0.96663 1.22391 0.95422 0.81699 0.99326 0.90201 1.23097 0.92434 1.00234 1.01817 1.21726 0.89533 0.88705 0.95160 1.44081 1.15979 1.09035 1.62599 1.18942 1.02666 0.86538 1.27103 0.90467 1.24802 0.96691 0.98294 1.00693 1.69944 1.08378 1.33328 1.45122 0.86229 0.76819 0.84144 0.78738 1.21667 1.21270 1.21241 1.23514 1.01690 0.85790 0.88095 1.68114 1.06232 1.29625 1.19000 0.92146 0.90382 0.90557 0.92869 0.91335 0.89852 0.81248 0.85617 0.92145 0.92314 0.91184 0.91708 0.91955 0.89109 0.92293 0.94253 0.92687 0.93737 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 10.28 59.85 0.62 0.89 16 2 N -0.60 -4.03 3.37 -189.51 -0.64 -4.67 16 3 C 0.09 0.51 10.50 59.85 0.63 1.13 16 4 C 0.37 3.55 7.37 -155.01 -1.14 2.41 16 5 C -0.01 -0.13 10.42 -17.10 -0.18 -0.31 16 6 N -0.37 -4.39 6.41 -9.44 -0.06 -4.45 16 7 C -0.04 -0.55 6.59 -82.88 -0.55 -1.09 16 8 C 0.58 9.97 7.67 -12.34 -0.09 9.87 16 9 O -0.53 -10.35 13.07 5.31 0.07 -10.28 16 10 N -0.58 -9.97 2.91 -165.30 -0.48 -10.45 16 11 C 0.09 1.25 5.85 -3.44 -0.02 1.23 16 12 C -0.13 -1.85 5.92 -26.42 -0.16 -2.01 16 13 C -0.12 -2.13 5.45 -27.37 -0.15 -2.28 16 14 C 0.16 3.51 2.56 -68.67 -0.18 3.34 16 15 H 0.02 0.38 8.01 -51.93 -0.42 -0.04 16 16 C 0.12 2.33 3.32 -66.98 -0.22 2.10 16 17 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 18 C -0.14 -3.02 5.18 -25.20 -0.13 -3.15 16 19 C 0.17 4.50 5.47 -1.70 -0.01 4.49 16 20 N -0.59 -15.66 3.35 -163.63 -0.55 -16.21 16 21 C -0.22 -6.34 9.95 -15.06 -0.15 -6.49 16 22 H 0.08 2.09 7.31 -52.49 -0.38 1.71 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -27.77 10.46 55.49 0.58 -27.19 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 C 0.17 2.14 10.76 -17.02 -0.18 1.96 16 30 N -0.51 -5.82 9.22 -11.95 -0.11 -5.93 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.12 8.07 -51.93 -0.42 -0.30 16 33 H 0.08 0.18 5.98 -51.93 -0.31 -0.13 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 36 H 0.08 0.58 7.30 -51.93 -0.38 0.20 16 37 H 0.17 0.97 6.02 -52.48 -0.32 0.66 16 38 H 0.13 1.62 4.29 -68.85 -0.30 1.32 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.22 7.70 -51.93 -0.40 0.82 16 43 H 0.06 1.14 8.12 -51.92 -0.42 0.72 16 44 H 0.09 2.08 5.93 -51.93 -0.31 1.77 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 47 H 0.05 1.55 7.19 -51.93 -0.37 1.17 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.18 2.14 7.66 -52.49 -0.40 1.74 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -34.31 377.21 -9.88 -44.19 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.34 Total: 0.06 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: -2.01 Total: 11.76 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -1.26 Total: -68.91 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.31 -9.88 -44.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049474365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.854 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds