Wall clock time and date at job start Wed Apr 1 2020 03:08:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.46496 * 119.99896 * 2 1
4 4 C 1.38506 * 120.00028 * 180.02562 * 2 1 3
5 5 C 1.39603 * 120.05071 * 5.01526 * 4 2 1
6 6 C 1.38281 * 118.03064 * 179.70266 * 5 4 2
7 7 C 1.40072 * 117.99026 * 0.53249 * 6 5 4
8 8 C 1.47859 * 120.09465 * 179.72858 * 7 6 5
9 9 O 1.21558 * 120.00015 * 352.91417 * 8 7 6
10 10 N 1.34773 * 120.00373 * 172.90240 * 8 7 6
11 11 C 1.47851 * 122.22457 * 354.64054 * 10 8 7
12 12 C 1.52718 * 111.06645 * 127.49315 * 11 10 8
13 13 C 1.53862 * 111.52527 * 48.52429 * 12 11 10
14 14 C 1.51082 * 107.40399 * 303.04357 * 13 12 11
15 15 H 1.09004 * 108.72906 * 308.57650 * 14 13 12
16 16 C 1.45728 * 122.23310 * 174.60676 * 10 8 7
17 17 H 1.09003 * 111.06993 * 119.49968 * 16 10 8
18 18 C 1.53425 * 116.36933 * 350.99967 * 16 10 8
19 19 C 1.55475 * 101.67479 * 207.28050 * 18 16 10
20 20 N 1.45426 * 120.14955 * 184.08158 * 14 13 12
21 21 C 1.36931 * 126.02147 * 29.02376 * 20 14 13
22 22 H 1.07999 * 120.00258 * 0.87733 * 21 20 14
23 23 C 1.38817 * 120.00030 * 180.87904 * 21 20 14
24 24 N 1.31622 * 119.99928 * 359.97438 * 23 21 20
25 25 Si 1.86796 * 120.00217 * 180.02562 * 23 21 20
26 26 H 1.48499 * 109.47447 * 89.99544 * 25 23 21
27 27 H 1.48500 * 109.47272 * 210.00179 * 25 23 21
28 28 H 1.48502 * 109.47095 * 329.99494 * 25 23 21
29 29 N 1.32754 * 119.80642 * 359.45985 * 7 6 5
30 30 N 1.28351 * 122.10661 * 0.27454 * 29 7 6
31 31 H 1.09000 * 109.46679 * 269.99258 * 1 2 3
32 32 H 1.09001 * 109.47422 * 29.99065 * 1 2 3
33 33 H 1.09000 * 109.47561 * 149.99893 * 1 2 3
34 34 H 1.09004 * 109.47417 * 270.00595 * 3 2 1
35 35 H 1.09005 * 109.47173 * 30.00484 * 3 2 1
36 36 H 1.09000 * 109.46969 * 150.00581 * 3 2 1
37 37 H 1.08008 * 120.97830 * 359.97438 * 5 4 2
38 38 H 1.08002 * 121.00828 * 180.28175 * 6 5 4
39 39 H 1.09006 * 109.16338 * 7.08409 * 11 10 8
40 40 H 1.08996 * 109.16255 * 247.89930 * 11 10 8
41 41 H 1.09002 * 109.06951 * 287.99899 * 12 11 10
42 42 H 1.09008 * 109.01656 * 169.01887 * 12 11 10
43 43 H 1.08999 * 109.88547 * 62.53646 * 13 12 11
44 44 H 1.08999 * 109.88838 * 183.54582 * 13 12 11
45 45 H 1.09000 * 110.98746 * 325.37619 * 18 16 10
46 46 H 1.09005 * 110.99052 * 89.18057 * 18 16 10
47 47 H 1.08994 * 109.96383 * 141.97734 * 19 18 16
48 48 H 1.08998 * 109.95791 * 263.18179 * 19 18 16
49 49 H 0.96992 * 120.00024 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1575 -1.1995 -0.0005
5 6 1.4646 -2.4067 -0.1067
6 6 2.1981 -3.5790 -0.1093
7 6 3.5908 -3.4833 0.0063
8 6 4.4199 -4.7075 0.0147
9 8 3.8894 -5.8006 0.0513
10 7 5.7638 -4.6115 -0.0184
11 6 6.4579 -3.3162 -0.1804
12 6 7.4998 -3.1106 0.9171
13 6 8.3976 -4.3492 1.0823
14 6 7.4954 -5.5259 1.3723
15 1 6.8322 -5.2637 2.1966
16 6 6.6295 -5.7774 0.1037
17 1 7.2508 -5.8988 -0.7836
18 6 5.9460 -7.0968 0.4857
19 6 7.1009 -7.8545 1.1992
20 7 8.0677 -6.8302 1.6658
21 6 9.2840 -7.0628 2.2503
22 1 9.9064 -6.2328 2.5506
23 6 9.7170 -8.3654 2.4569
24 7 8.9583 -9.3769 2.0914
25 14 11.3759 -8.6828 3.2549
26 1 11.2084 -8.7685 4.7279
27 1 11.9341 -9.9608 2.7449
28 1 12.3041 -7.5712 2.9262
29 7 4.1645 -2.2900 0.1029
30 7 3.4823 -1.2028 0.0996
31 1 -0.3633 -0.0001 1.0277
32 1 -0.3634 0.8901 -0.5137
33 1 -0.3634 -0.8900 -0.5138
34 1 2.3791 1.5835 -1.0277
35 1 1.6084 2.0284 0.5139
36 1 3.1499 1.1383 0.5137
37 1 0.3878 -2.4243 -0.1889
38 1 1.7116 -4.5395 -0.1937
39 1 5.7260 -2.5098 -0.1344
40 1 6.9524 -3.2942 -1.1515
41 1 6.9896 -2.9123 1.8598
42 1 8.1208 -2.2521 0.6611
43 1 8.9558 -4.5277 0.1633
44 1 9.0883 -4.1984 1.9120
45 1 5.1137 -6.9222 1.1676
46 1 5.6148 -7.6362 -0.4018
47 1 6.7102 -8.4123 2.0501
48 1 7.5873 -8.5349 0.5002
49 1 9.2606 -10.2870 2.2361
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049848039.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:08:51
Heat of formation + Delta-G solvation = 102.035399 kcal
Electronic energy + Delta-G solvation = -31165.740474 eV
Core-core repulsion = 27130.922510 eV
Total energy + Delta-G solvation = -4034.817963 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.45429 -39.95520 -37.84787 -37.29208 -35.28278 -33.38756 -32.49624 -32.41667
-31.46821 -28.98274 -28.82226 -28.02648 -26.57755 -25.03531 -24.33399 -24.15266
-22.60747 -21.30336 -21.05842 -19.87356 -19.26003 -17.89722 -17.83826 -16.88764
-16.35604 -16.09792 -15.55381 -15.18669 -15.02249 -14.87711 -14.63075 -14.45056
-14.21027 -13.98367 -13.75747 -13.49564 -13.24333 -13.13033 -12.91507 -12.73842
-12.43878 -12.34205 -12.08326 -12.00116 -11.64256 -11.30866 -11.05041 -10.89211
-10.77778 -10.61422 -10.44749 -10.33226 -10.26203 -10.03810 -9.94333 -9.73523
-9.53534 -9.37491 -9.01583 -8.52106 -8.32093 -8.05127 -6.73778 -5.62148
-2.95617 0.48190 0.62971 2.28872 2.76771 3.16838 3.45875 3.50517
3.52447 3.64437 3.88110 4.15166 4.31695 4.38142 4.57220 4.58527
4.68580 4.78567 4.85871 5.08179 5.14408 5.15071 5.30058 5.41236
5.42616 5.46759 5.51007 5.66962 5.67810 5.68375 5.76567 5.87375
5.97372 6.18823 6.24405 6.32383 6.44555 6.46015 6.54809 6.60259
6.66021 6.71778 6.85679 6.90601 6.99707 7.28783 7.65888 7.72608
7.79777 7.91838 8.30973 8.34298 8.51341 9.28083 9.91546 10.59645
11.49981
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.024988 B = 0.002548 C = 0.002383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1120.283645 B =10988.358182 C =11745.667795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.603 5.603
3 C 0.092 3.908
4 C 0.351 3.649
5 C -0.187 4.187
6 C -0.023 4.023
7 C -0.018 4.018
8 C 0.577 3.423
9 O -0.530 6.530
10 N -0.575 5.575
11 C 0.058 3.942
12 C -0.121 4.121
13 C -0.116 4.116
14 C 0.159 3.841
15 H 0.018 0.982
16 C 0.115 3.885
17 H 0.080 0.920
18 C -0.129 4.129
19 C 0.174 3.826
20 N -0.594 5.594
21 C -0.223 4.223
22 H 0.078 0.922
23 C -0.009 4.009
24 N -0.921 5.921
25 Si 0.910 3.090
26 H -0.290 1.290
27 H -0.291 1.291
28 H -0.282 1.282
29 N -0.160 5.160
30 N -0.310 5.310
31 H 0.058 0.942
32 H 0.077 0.923
33 H 0.073 0.927
34 H 0.054 0.946
35 H 0.068 0.932
36 H 0.085 0.915
37 H 0.153 0.847
38 H 0.162 0.838
39 H 0.152 0.848
40 H 0.056 0.944
41 H 0.061 0.939
42 H 0.070 0.930
43 H 0.062 0.938
44 H 0.064 0.936
45 H 0.078 0.922
46 H 0.062 0.938
47 H 0.040 0.960
48 H 0.056 0.944
49 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.503 21.500 -7.150 29.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 N -0.316 5.316
3 C -0.050 4.050
4 C 0.111 3.889
5 C -0.220 4.220
6 C -0.052 4.052
7 C -0.169 4.169
8 C 0.362 3.638
9 O -0.406 6.406
10 N -0.306 5.306
11 C -0.065 4.065
12 C -0.160 4.160
13 C -0.155 4.155
14 C 0.050 3.950
15 H 0.035 0.965
16 C 0.011 3.989
17 H 0.098 0.902
18 C -0.168 4.168
19 C 0.050 3.950
20 N -0.318 5.318
21 C -0.351 4.351
22 H 0.096 0.904
23 C -0.206 4.206
24 N -0.569 5.569
25 Si 0.740 3.260
26 H -0.217 1.217
27 H -0.218 1.218
28 H -0.207 1.207
29 N -0.005 5.005
30 N -0.162 5.162
31 H 0.077 0.923
32 H 0.096 0.904
33 H 0.092 0.908
34 H 0.072 0.928
35 H 0.087 0.913
36 H 0.103 0.897
37 H 0.170 0.830
38 H 0.180 0.820
39 H 0.168 0.832
40 H 0.074 0.926
41 H 0.079 0.921
42 H 0.089 0.911
43 H 0.080 0.920
44 H 0.083 0.917
45 H 0.096 0.904
46 H 0.081 0.919
47 H 0.058 0.942
48 H 0.074 0.926
49 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -17.422 21.766 -6.912 28.724
hybrid contribution -0.304 -0.988 0.279 1.071
sum -17.726 20.778 -6.633 28.106
Atomic orbital electron populations
1.21841 0.77968 1.03511 1.02144 1.46093 1.05455 1.02994 1.77101
1.21726 0.97948 0.83418 1.01922 1.20072 0.91369 0.86997 0.90449
1.21830 1.02064 0.91086 1.07001 1.22164 0.92771 1.00102 0.90165
1.22751 0.93779 0.94403 1.05974 1.17422 0.81792 0.86726 0.77879
1.90800 1.72304 1.26511 1.50984 1.47854 1.04199 1.09339 1.69198
1.23128 0.98187 0.87115 0.98025 1.21799 0.96980 0.98121 0.99087
1.21447 0.98028 0.94229 1.01815 1.20849 0.93210 0.87796 0.93167
0.96461 1.22504 0.91336 0.85872 0.99207 0.90186 1.22933 0.98953
0.93986 1.00900 1.21721 0.86493 0.90044 0.96755 1.44236 1.18557
0.99064 1.69989 1.19018 0.92669 0.92049 1.31410 0.90376 1.24802
0.98581 0.95564 1.01606 1.69947 1.36690 0.97843 1.52397 0.86152
0.83567 0.77291 0.78956 1.21721 1.21768 1.20747 1.72559 1.27569
0.94827 1.05544 1.73146 1.03716 1.20397 1.18965 0.92311 0.90420
0.90809 0.92784 0.91302 0.89658 0.82978 0.82013 0.83218 0.92592
0.92059 0.91135 0.91971 0.91692 0.90366 0.91890 0.94224 0.92603
0.93810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.30 10.29 59.85 0.62 0.92 16
2 N -0.60 -4.20 3.38 -189.54 -0.64 -4.84 16
3 C 0.09 0.53 10.50 59.84 0.63 1.15 16
4 C 0.35 3.47 7.44 -154.94 -1.15 2.31 16
5 C -0.19 -1.61 9.33 -39.06 -0.36 -1.98 16
6 C -0.02 -0.26 9.71 -38.88 -0.38 -0.64 16
7 C -0.02 -0.26 6.74 -82.84 -0.56 -0.82 16
8 C 0.58 9.97 7.62 -12.32 -0.09 9.87 16
9 O -0.53 -10.27 13.35 5.31 0.07 -10.20 16
10 N -0.58 -10.11 2.91 -165.00 -0.48 -10.59 16
11 C 0.06 0.87 6.23 -3.45 -0.02 0.85 16
12 C -0.12 -1.82 5.93 -26.43 -0.16 -1.98 16
13 C -0.12 -2.17 5.50 -27.25 -0.15 -2.32 16
14 C 0.16 3.51 2.61 -68.07 -0.18 3.34 16
15 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16
16 C 0.11 2.33 3.28 -66.73 -0.22 2.11 16
17 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16
18 C -0.13 -2.84 4.98 -25.20 -0.13 -2.96 16
19 C 0.17 4.53 5.48 -1.69 -0.01 4.52 16
20 N -0.59 -15.76 3.36 -162.91 -0.55 -16.30 16
21 C -0.22 -6.33 9.95 -15.06 -0.15 -6.48 16
22 H 0.08 2.13 7.36 -52.49 -0.39 1.75 16
23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16
24 N -0.92 -27.84 10.46 55.49 0.58 -27.26 16
25 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16
26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16
27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
28 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
29 N -0.16 -2.21 7.32 33.32 0.24 -1.97 16
30 N -0.31 -3.83 10.25 31.21 0.32 -3.51 16
31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16
32 H 0.08 0.14 8.07 -51.93 -0.42 -0.28 16
33 H 0.07 0.19 6.01 -51.93 -0.31 -0.12 16
34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16
35 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16
36 H 0.08 0.62 7.31 -51.93 -0.38 0.24 16
37 H 0.15 0.77 6.11 -52.48 -0.32 0.45 16
38 H 0.16 1.58 7.73 -52.49 -0.41 1.18 16
39 H 0.15 2.15 3.56 -159.22 -0.57 1.58 16
40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
42 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16
43 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16
44 H 0.06 1.24 7.74 -51.93 -0.40 0.84 16
45 H 0.08 1.78 6.32 -51.93 -0.33 1.45 16
46 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
47 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16
48 H 0.06 1.57 7.19 -51.93 -0.37 1.20 16
49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 377.74 15.07 5.69 5.69
Total: -1.00 -34.41 377.74 -9.84 -44.26
By element:
Atomic # 1 Polarization: 7.23 SS G_CDS: -7.65 Total: -0.42 kcal
Atomic # 6 Polarization: 9.94 SS G_CDS: -2.41 Total: 7.53 kcal
Atomic # 7 Polarization: -63.94 SS G_CDS: -0.52 Total: -64.46 kcal
Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal
Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -34.41 -9.84 -44.26 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049848039.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.294 kcal
(2) G-P(sol) polarization free energy of solvation -34.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.879 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.258 kcal
(6) G-S(sol) free energy of system = (1) + (5) 102.035 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds