Wall clock time and date at job start Wed Apr 1 2020 03:08:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.46496 * 119.99896 * 2 1
4 4 C 1.38506 * 120.00028 * 180.02562 * 2 1 3
5 5 C 1.39603 * 120.05071 * 5.01526 * 4 2 1
6 6 C 1.38281 * 118.03064 * 179.70266 * 5 4 2
7 7 C 1.40072 * 117.99026 * 0.53249 * 6 5 4
8 8 C 1.47859 * 120.09465 * 179.72858 * 7 6 5
9 9 O 1.21558 * 120.00015 * 352.91417 * 8 7 6
10 10 N 1.34773 * 120.00373 * 172.90240 * 8 7 6
11 11 C 1.47851 * 122.22457 * 354.64054 * 10 8 7
12 12 C 1.52718 * 111.06645 * 127.49315 * 11 10 8
13 13 C 1.53862 * 111.52527 * 48.52429 * 12 11 10
14 14 C 1.51082 * 107.40399 * 303.04357 * 13 12 11
15 15 H 1.09004 * 108.72906 * 308.57650 * 14 13 12
16 16 C 1.45728 * 122.23310 * 174.60676 * 10 8 7
17 17 H 1.09003 * 111.06993 * 119.49968 * 16 10 8
18 18 C 1.53425 * 116.36933 * 350.99967 * 16 10 8
19 19 C 1.55475 * 101.67479 * 207.28050 * 18 16 10
20 20 N 1.45426 * 120.14955 * 184.08158 * 14 13 12
21 21 C 1.36931 * 126.02147 * 29.02376 * 20 14 13
22 22 H 1.07999 * 120.00258 * 0.87733 * 21 20 14
23 23 C 1.38817 * 120.00030 * 180.87904 * 21 20 14
24 24 N 1.31622 * 119.99928 * 359.97438 * 23 21 20
25 25 Si 1.86796 * 120.00217 * 180.02562 * 23 21 20
26 26 H 1.48499 * 109.47447 * 89.99544 * 25 23 21
27 27 H 1.48500 * 109.47272 * 210.00179 * 25 23 21
28 28 H 1.48502 * 109.47095 * 329.99494 * 25 23 21
29 29 N 1.32754 * 119.80642 * 359.45985 * 7 6 5
30 30 N 1.28351 * 122.10661 * 0.27454 * 29 7 6
31 31 H 1.09000 * 109.46679 * 269.99258 * 1 2 3
32 32 H 1.09001 * 109.47422 * 29.99065 * 1 2 3
33 33 H 1.09000 * 109.47561 * 149.99893 * 1 2 3
34 34 H 1.09004 * 109.47417 * 270.00595 * 3 2 1
35 35 H 1.09005 * 109.47173 * 30.00484 * 3 2 1
36 36 H 1.09000 * 109.46969 * 150.00581 * 3 2 1
37 37 H 1.08008 * 120.97830 * 359.97438 * 5 4 2
38 38 H 1.08002 * 121.00828 * 180.28175 * 6 5 4
39 39 H 1.09006 * 109.16338 * 7.08409 * 11 10 8
40 40 H 1.08996 * 109.16255 * 247.89930 * 11 10 8
41 41 H 1.09002 * 109.06951 * 287.99899 * 12 11 10
42 42 H 1.09008 * 109.01656 * 169.01887 * 12 11 10
43 43 H 1.08999 * 109.88547 * 62.53646 * 13 12 11
44 44 H 1.08999 * 109.88838 * 183.54582 * 13 12 11
45 45 H 1.09000 * 110.98746 * 325.37619 * 18 16 10
46 46 H 1.09005 * 110.99052 * 89.18057 * 18 16 10
47 47 H 1.08994 * 109.96383 * 141.97734 * 19 18 16
48 48 H 1.08998 * 109.95791 * 263.18179 * 19 18 16
49 49 H 0.96992 * 120.00024 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1575 -1.1995 -0.0005
5 6 1.4646 -2.4067 -0.1067
6 6 2.1981 -3.5790 -0.1093
7 6 3.5908 -3.4833 0.0063
8 6 4.4199 -4.7075 0.0147
9 8 3.8894 -5.8006 0.0513
10 7 5.7638 -4.6115 -0.0184
11 6 6.4579 -3.3162 -0.1804
12 6 7.4998 -3.1106 0.9171
13 6 8.3976 -4.3492 1.0823
14 6 7.4954 -5.5259 1.3723
15 1 6.8322 -5.2637 2.1966
16 6 6.6295 -5.7774 0.1037
17 1 7.2508 -5.8988 -0.7836
18 6 5.9460 -7.0968 0.4857
19 6 7.1009 -7.8545 1.1992
20 7 8.0677 -6.8302 1.6658
21 6 9.2840 -7.0628 2.2503
22 1 9.9064 -6.2328 2.5506
23 6 9.7170 -8.3654 2.4569
24 7 8.9583 -9.3769 2.0914
25 14 11.3759 -8.6828 3.2549
26 1 11.2084 -8.7685 4.7279
27 1 11.9341 -9.9608 2.7449
28 1 12.3041 -7.5712 2.9262
29 7 4.1645 -2.2900 0.1029
30 7 3.4823 -1.2028 0.0996
31 1 -0.3633 -0.0001 1.0277
32 1 -0.3634 0.8901 -0.5137
33 1 -0.3634 -0.8900 -0.5138
34 1 2.3791 1.5835 -1.0277
35 1 1.6084 2.0284 0.5139
36 1 3.1499 1.1383 0.5137
37 1 0.3878 -2.4243 -0.1889
38 1 1.7116 -4.5395 -0.1937
39 1 5.7260 -2.5098 -0.1344
40 1 6.9524 -3.2942 -1.1515
41 1 6.9896 -2.9123 1.8598
42 1 8.1208 -2.2521 0.6611
43 1 8.9558 -4.5277 0.1633
44 1 9.0883 -4.1984 1.9120
45 1 5.1137 -6.9222 1.1676
46 1 5.6148 -7.6362 -0.4018
47 1 6.7102 -8.4123 2.0501
48 1 7.5873 -8.5349 0.5002
49 1 9.2606 -10.2870 2.2361
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049848039.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:08:50
Heat of formation + Delta-G solvation = 80.258287 kcal
Electronic energy + Delta-G solvation = -31166.684800 eV
Core-core repulsion = 27130.922510 eV
Total energy + Delta-G solvation = -4035.762290 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.40883 -41.31698 -39.25084 -38.08673 -36.90976 -34.33287 -34.18859 -33.90058
-32.62179 -30.74320 -29.65688 -29.34114 -27.50525 -26.35257 -26.05867 -25.22581
-23.46907 -22.83193 -22.51620 -21.59011 -20.77060 -18.98651 -18.56694 -18.35105
-17.78156 -17.20249 -16.80467 -16.61240 -16.29677 -15.96046 -15.85449 -15.61426
-15.42879 -15.28191 -15.02247 -14.86721 -14.47820 -14.26036 -14.15045 -13.91480
-13.44868 -13.39934 -13.21961 -13.13511 -12.99332 -12.85309 -12.72603 -12.63507
-12.28392 -12.05168 -11.83233 -11.78189 -11.73908 -11.64698 -11.47562 -11.33166
-11.28920 -10.77443 -10.59961 -10.26630 -9.57466 -8.92173 -8.86858 -7.82938
-5.19775 -0.41597 -0.17260 1.45832 1.48541 1.57117 1.63647 1.71019
1.91756 2.51170 2.64452 2.92380 3.31373 3.35312 3.45708 3.55821
3.66599 3.82510 3.89644 4.02327 4.10636 4.16182 4.23402 4.35193
4.36043 4.44867 4.52049 4.57655 4.59053 4.60749 4.69939 4.72752
4.81562 4.87339 4.92684 4.97547 5.04043 5.06375 5.11218 5.14208
5.24938 5.38513 5.47267 5.50483 5.59471 5.68047 5.76410 5.95077
6.03057 6.18651 6.44683 7.02150 7.06998 7.59544 7.76082 8.45386
9.28838
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.024988 B = 0.002548 C = 0.002383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1120.283645 B =10988.358182 C =11745.667795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -0.596 5.596
3 C 0.087 3.913
4 C 0.346 3.654
5 C -0.168 4.168
6 C -0.030 4.030
7 C -0.042 4.042
8 C 0.574 3.426
9 O -0.560 6.560
10 N -0.581 5.581
11 C 0.057 3.943
12 C -0.111 4.111
13 C -0.110 4.110
14 C 0.154 3.846
15 H -0.003 1.003
16 C 0.129 3.871
17 H 0.081 0.919
18 C -0.111 4.111
19 C 0.185 3.815
20 N -0.612 5.612
21 C -0.233 4.233
22 H 0.087 0.913
23 C -0.070 4.070
24 N -0.955 5.955
25 Si 0.980 3.020
26 H -0.288 1.288
27 H -0.295 1.295
28 H -0.265 1.265
29 N -0.171 5.171
30 N -0.329 5.329
31 H 0.068 0.932
32 H 0.099 0.901
33 H 0.087 0.913
34 H 0.060 0.940
35 H 0.095 0.905
36 H 0.067 0.933
37 H 0.193 0.807
38 H 0.170 0.830
39 H 0.165 0.835
40 H 0.070 0.930
41 H 0.054 0.946
42 H 0.105 0.895
43 H 0.064 0.936
44 H 0.057 0.943
45 H 0.069 0.931
46 H 0.070 0.930
47 H 0.003 0.997
48 H 0.028 0.972
49 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.029 25.109 -7.859 33.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.307 5.307
3 C -0.055 4.055
4 C 0.105 3.895
5 C -0.200 4.200
6 C -0.058 4.058
7 C -0.193 4.193
8 C 0.361 3.639
9 O -0.439 6.439
10 N -0.311 5.311
11 C -0.064 4.064
12 C -0.149 4.149
13 C -0.149 4.149
14 C 0.046 3.954
15 H 0.014 0.986
16 C 0.024 3.976
17 H 0.099 0.901
18 C -0.149 4.149
19 C 0.060 3.940
20 N -0.337 5.337
21 C -0.362 4.362
22 H 0.105 0.895
23 C -0.263 4.263
24 N -0.604 5.604
25 Si 0.808 3.192
26 H -0.216 1.216
27 H -0.221 1.221
28 H -0.189 1.189
29 N -0.016 5.016
30 N -0.183 5.183
31 H 0.087 0.913
32 H 0.118 0.882
33 H 0.105 0.895
34 H 0.079 0.921
35 H 0.114 0.886
36 H 0.085 0.915
37 H 0.210 0.790
38 H 0.187 0.813
39 H 0.181 0.819
40 H 0.088 0.912
41 H 0.073 0.927
42 H 0.124 0.876
43 H 0.083 0.917
44 H 0.076 0.924
45 H 0.088 0.912
46 H 0.089 0.911
47 H 0.021 0.979
48 H 0.046 0.954
49 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -18.992 25.475 -7.630 32.679
hybrid contribution -0.027 -1.909 0.521 1.979
sum -19.019 23.566 -7.109 31.107
Atomic orbital electron populations
1.22174 0.75516 1.05331 1.03343 1.46511 1.06973 1.02343 1.74846
1.21859 0.97712 0.83470 1.02503 1.20368 0.90899 0.88657 0.89602
1.22180 1.03737 0.89472 1.04655 1.22275 0.91612 1.01497 0.90410
1.22299 0.94556 0.93222 1.09235 1.17897 0.81687 0.87653 0.76692
1.90764 1.72819 1.28040 1.52248 1.47915 1.04451 1.09122 1.69619
1.23357 0.98433 0.86119 0.98540 1.21764 0.96748 0.97360 0.99058
1.21415 0.97892 0.94065 1.01502 1.20988 0.93879 0.87265 0.93236
0.98596 1.22119 0.91259 0.86098 0.98121 0.90144 1.22676 0.96988
0.94836 1.00434 1.21435 0.87486 0.90144 0.94962 1.44486 1.18245
1.00960 1.70048 1.19427 0.93301 0.92455 1.31024 0.89501 1.25707
1.02412 0.95413 1.02745 1.70174 1.38473 0.97883 1.53845 0.85050
0.79305 0.77198 0.77622 1.21554 1.22124 1.18947 1.72297 1.28540
0.94917 1.05845 1.73053 1.05306 1.19492 1.20474 0.91313 0.88238
0.89494 0.92107 0.88630 0.91463 0.78955 0.81280 0.81946 0.91206
0.92689 0.87642 0.91726 0.92404 0.91210 0.91091 0.97907 0.95368
0.94427
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.18 10.29 127.77 1.31 1.49 16
2 N -0.60 -6.16 3.38 -753.59 -2.54 -8.71 16
3 C 0.09 0.73 10.50 127.77 1.34 2.07 16
4 C 0.35 5.88 7.44 133.21 0.99 6.87 16
5 C -0.17 -2.37 9.33 22.61 0.21 -2.16 16
6 C -0.03 -0.62 9.71 22.73 0.22 -0.39 16
7 C -0.04 -1.16 6.74 42.00 0.28 -0.88 16
8 C 0.57 20.03 7.62 86.79 0.66 20.69 16
9 O -0.56 -22.27 13.35 -3.90 -0.05 -22.33 16
10 N -0.58 -20.46 2.91 -794.23 -2.32 -22.77 16
11 C 0.06 1.64 6.23 86.03 0.54 2.17 16
12 C -0.11 -3.17 5.93 30.79 0.18 -2.99 16
13 C -0.11 -4.06 5.50 30.26 0.17 -3.89 16
14 C 0.15 7.01 2.61 45.48 0.12 7.13 16
15 H 0.00 -0.17 8.06 -2.38 -0.02 -0.19 16
16 C 0.13 5.36 3.28 46.19 0.15 5.51 16
17 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16
18 C -0.11 -5.11 4.98 31.59 0.16 -4.95 16
19 C 0.18 10.21 5.48 86.87 0.48 10.69 16
20 N -0.61 -33.86 3.36 -669.32 -2.25 -36.11 16
21 C -0.23 -13.58 9.95 84.04 0.84 -12.75 16
22 H 0.09 4.78 7.36 -2.91 -0.02 4.76 16
23 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16
24 N -0.95 -60.24 10.46 21.65 0.23 -60.02 16
25 Si 0.98 47.43 29.55 68.60 2.03 49.45 16
26 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16
27 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16
28 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16
29 N -0.17 -4.53 7.32 -48.50 -0.35 -4.89 16
30 N -0.33 -7.58 10.25 -55.17 -0.57 -8.15 16
31 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16
32 H 0.10 -0.13 8.07 -2.39 -0.02 -0.15 16
33 H 0.09 0.00 6.01 -2.39 -0.01 -0.01 16
34 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16
35 H 0.10 0.30 8.07 -2.38 -0.02 0.28 16
36 H 0.07 0.85 7.31 -2.39 -0.02 0.83 16
37 H 0.19 1.03 6.11 -2.91 -0.02 1.01 16
38 H 0.17 3.13 7.73 -2.91 -0.02 3.10 16
39 H 0.17 4.44 3.56 -141.17 -0.50 3.94 16
40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
42 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16
43 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16
44 H 0.06 2.19 7.74 -2.39 -0.02 2.17 16
45 H 0.07 3.34 6.32 -2.39 -0.02 3.32 16
46 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16
47 H 0.00 0.16 7.81 -2.39 -0.02 0.15 16
48 H 0.03 1.69 7.19 -2.39 -0.02 1.67 16
49 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16
Total: -1.00 -79.10 377.74 2.76 -76.35
By element:
Atomic # 1 Polarization: 11.76 SS G_CDS: 0.47 Total: 12.24 kcal
Atomic # 6 Polarization: 16.81 SS G_CDS: 8.11 Total: 24.93 kcal
Atomic # 7 Polarization: -132.84 SS G_CDS: -7.80 Total: -140.64 kcal
Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.33 kcal
Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal
Total: -79.10 2.76 -76.35 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049848039.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 156.604 kcal
(2) G-P(sol) polarization free energy of solvation -79.104 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.345 kcal
(6) G-S(sol) free energy of system = (1) + (5) 80.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds