Wall clock time and date at job start Wed Apr 1 2020 04:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99559 * 2 1 4 4 H 1.48505 * 109.47287 * 239.99713 * 3 2 1 5 5 H 1.48502 * 109.47607 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47182 * 119.99932 * 3 2 1 7 7 C 1.38811 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99810 * 163.07835 * 7 2 1 9 9 N 1.36938 * 120.00045 * 343.08010 * 7 2 1 10 10 C 1.46927 * 120.62862 * 331.83789 * 9 7 2 11 11 C 1.53188 * 108.77505 * 233.60659 * 10 9 7 12 12 C 1.53031 * 109.31319 * 305.36682 * 11 10 9 13 13 C 1.53042 * 109.54108 * 61.36790 * 12 11 10 14 14 H 1.08999 * 109.49445 * 58.61235 * 13 12 11 15 15 C 1.52997 * 109.49856 * 178.68487 * 13 12 11 16 16 H 1.08998 * 109.52767 * 59.91587 * 15 13 12 17 17 C 1.53042 * 109.49485 * 180.02562 * 15 13 12 18 18 C 1.53040 * 109.53609 * 181.31558 * 17 15 13 19 19 C 1.53188 * 109.31340 * 298.63099 * 18 17 15 20 20 N 1.46927 * 108.77505 * 54.63459 * 19 18 17 21 21 C 1.34770 * 120.62914 * 126.37129 * 20 19 18 22 22 O 1.21287 * 120.00067 * 179.97438 * 21 20 19 23 23 C 1.50708 * 120.00036 * 0.02562 * 21 20 19 24 24 C 1.50706 * 109.47074 * 179.97438 * 23 21 20 25 25 C 1.34851 * 125.88568 * 84.99835 * 24 23 21 26 26 C 1.40894 * 107.41364 * 179.97438 * 25 24 23 27 27 C 1.34851 * 107.41779 * 0.02562 * 26 25 24 28 28 N 1.36335 * 125.89148 * 264.69683 * 24 23 21 29 29 H 0.97000 * 125.64181 * 359.97438 * 28 24 23 30 30 C 1.46924 * 118.73796 * 306.64479 * 20 19 18 31 31 C 1.46916 * 120.63024 * 151.83604 * 9 7 2 32 32 H 0.97000 * 120.00365 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.58300 * 113.81852 * 10 9 7 34 34 H 1.08997 * 109.70601 * 353.46651 * 10 9 7 35 35 H 1.09005 * 109.49883 * 185.41138 * 11 10 9 36 36 H 1.09000 * 109.52206 * 65.33902 * 11 10 9 37 37 H 1.09002 * 109.46240 * 301.34210 * 12 11 10 38 38 H 1.09001 * 109.44918 * 181.37963 * 12 11 10 39 39 H 1.08996 * 109.46502 * 61.29425 * 17 15 13 40 40 H 1.09008 * 109.45707 * 301.33099 * 17 15 13 41 41 H 1.09005 * 109.49874 * 178.67691 * 18 17 15 42 42 H 1.08995 * 109.50261 * 58.58196 * 18 17 15 43 43 H 1.09006 * 109.58628 * 294.85395 * 19 18 17 44 44 H 1.08993 * 109.70643 * 174.49749 * 19 18 17 45 45 H 1.08992 * 109.47157 * 299.99764 * 23 21 20 46 46 H 1.08994 * 109.46730 * 60.00068 * 23 21 20 47 47 H 1.07997 * 126.29791 * 359.97438 * 25 24 23 48 48 H 1.07997 * 126.29048 * 179.97438 * 26 25 24 49 49 H 1.07999 * 125.89103 * 179.97438 * 27 26 25 50 50 H 1.09001 * 109.58615 * 173.14356 * 30 20 19 51 51 H 1.09004 * 109.58687 * 293.56729 * 30 20 19 52 52 H 1.08994 * 109.58968 * 6.60986 * 31 9 7 53 53 H 1.09001 * 109.59253 * 246.17568 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2679 11 6 0.4978 -3.3187 2.4146 12 6 0.8126 -4.7003 1.8369 13 6 2.0681 -4.6169 0.9656 14 1 2.9030 -4.2533 1.5646 15 6 2.4007 -6.0051 0.4151 16 1 1.5659 -6.3692 -0.1837 17 6 3.6565 -5.9217 -0.4557 18 6 3.9714 -7.3034 -1.0335 19 6 4.2424 -8.2823 0.1133 20 7 3.0980 -8.2599 1.0345 21 6 2.4674 -9.4016 1.3740 22 8 1.5242 -9.3699 2.1359 23 6 2.9349 -10.7177 0.8079 24 6 2.0689 -11.8299 1.3412 25 6 0.8873 -12.2274 0.8271 26 6 0.4169 -13.2899 1.6239 27 6 1.3288 -13.5008 2.5948 28 7 2.3478 -12.6114 2.4229 29 1 3.1394 -12.5446 2.9795 30 6 2.6505 -6.9686 1.5739 31 6 1.8142 -3.6528 -0.1976 32 1 -0.4851 0.8400 -0.0004 33 1 -0.6768 -2.6408 0.7368 34 1 0.0965 -1.3346 1.6686 35 1 -0.3828 -3.3836 3.0539 36 1 1.3472 -2.9670 3.0003 37 1 -0.0275 -5.0410 1.2317 38 1 0.9822 -5.4043 2.6516 39 1 4.4964 -5.5813 0.1499 40 1 3.4874 -5.2174 -1.2703 41 1 4.8522 -7.2386 -1.6723 42 1 3.1220 -7.6552 -1.6189 43 1 5.1453 -7.9815 0.6448 44 1 4.3711 -9.2886 -0.2852 45 1 2.8642 -10.6912 -0.2794 46 1 3.9703 -10.8917 1.1005 47 1 0.3924 -11.8084 -0.0365 48 1 -0.5049 -13.8348 1.4835 49 1 1.2650 -14.2482 3.3718 50 1 1.7275 -7.1078 2.1368 51 1 3.4209 -6.5586 2.2269 52 1 2.7349 -3.5134 -0.7641 53 1 1.0407 -4.0609 -0.8481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053054245.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:29 Heat of formation + Delta-G solvation = -1.871788 kcal Electronic energy + Delta-G solvation = -30952.832585 eV Core-core repulsion = 27017.049211 eV Total energy + Delta-G solvation = -3935.783374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.08519 -41.15251 -39.69088 -38.02197 -35.55004 -34.05016 -32.94712 -32.55280 -32.19883 -31.77905 -29.78641 -27.72923 -27.26956 -25.94904 -24.70406 -23.64207 -22.68667 -21.64893 -21.38467 -20.96003 -20.66554 -19.97820 -18.69561 -18.38681 -18.04907 -16.86774 -16.73839 -16.46131 -15.77834 -15.76217 -15.27913 -15.10760 -14.99132 -14.82575 -14.64704 -14.54097 -14.28124 -14.24803 -14.09359 -13.93073 -13.81518 -13.56371 -13.29690 -13.11203 -13.00379 -12.95792 -12.65410 -12.48593 -12.43336 -12.26370 -11.98723 -11.88952 -11.81164 -11.66431 -11.59280 -11.45614 -11.09238 -10.81813 -10.74957 -10.52906 -9.70268 -9.58528 -8.90358 -8.67001 -7.86460 -5.32842 1.29364 1.46003 1.48991 1.55683 1.64914 1.99918 2.25379 2.51237 2.55054 3.27451 3.58327 3.63281 3.77049 3.87788 3.94562 3.96752 4.13489 4.19197 4.23146 4.23707 4.35284 4.42211 4.47680 4.50219 4.57324 4.62959 4.65953 4.68733 4.75252 4.83563 4.87734 4.89248 4.92325 4.93362 5.02022 5.05933 5.07840 5.19290 5.26164 5.33089 5.36825 5.40727 5.43434 5.44806 5.52489 5.58366 5.59252 5.66909 5.76092 6.10083 6.23854 6.39213 6.46797 6.84217 7.14551 7.21806 7.86594 8.39670 9.19745 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.002165 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.676642 B =12931.542257 C =13643.216105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.176 3.824 11 C -0.131 4.131 12 C -0.100 4.100 13 C -0.081 4.081 14 H 0.066 0.934 15 C -0.080 4.080 16 H 0.055 0.945 17 C -0.117 4.117 18 C -0.130 4.130 19 C 0.101 3.899 20 N -0.609 5.609 21 C 0.507 3.493 22 O -0.583 6.583 23 C -0.061 4.061 24 C 0.022 3.978 25 C -0.213 4.213 26 C -0.231 4.231 27 C -0.010 4.010 28 N -0.548 5.548 29 H 0.424 0.576 30 C 0.122 3.878 31 C 0.155 3.845 32 H 0.249 0.751 33 H -0.011 1.011 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.137 0.863 46 H 0.133 0.867 47 H 0.126 0.874 48 H 0.139 0.861 49 H 0.192 0.808 50 H 0.068 0.932 51 H 0.073 0.927 52 H 0.059 0.941 53 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.718 -27.143 1.976 30.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.050 3.950 11 C -0.170 4.170 12 C -0.138 4.138 13 C -0.101 4.101 14 H 0.085 0.915 15 C -0.100 4.100 16 H 0.074 0.926 17 C -0.155 4.155 18 C -0.168 4.168 19 C -0.020 4.020 20 N -0.341 5.341 21 C 0.296 3.704 22 O -0.462 6.462 23 C -0.101 4.101 24 C -0.092 4.092 25 C -0.238 4.238 26 C -0.255 4.255 27 C -0.141 4.141 28 N -0.144 5.144 29 H 0.263 0.737 30 C -0.001 4.001 31 C 0.030 3.970 32 H 0.058 0.942 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.134 0.866 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.144 0.856 48 H 0.157 0.843 49 H 0.209 0.791 50 H 0.087 0.913 51 H 0.091 0.909 52 H 0.078 0.922 53 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 12.276 -26.982 2.443 29.744 hybrid contribution -0.331 1.558 0.128 1.598 sum 11.945 -25.424 2.571 28.208 Atomic orbital electron populations 1.70201 1.06823 1.25862 1.55514 1.25862 0.96051 1.01713 1.01403 0.85320 0.77523 0.79042 0.78444 1.19822 1.22245 1.20354 1.19491 0.92853 0.85940 1.40777 0.91308 1.44319 1.35773 1.02505 1.50758 1.20568 0.87723 0.97535 0.89146 1.22016 1.00601 0.96303 0.98110 1.21446 0.97421 0.96113 0.98776 1.21449 0.97361 0.94254 0.97073 0.91520 1.21262 0.98701 0.93458 0.96560 0.92624 1.21615 0.96580 0.98111 0.99151 1.21913 1.03150 0.94010 0.97717 1.22108 0.87549 1.02298 0.90031 1.48258 1.32976 1.05807 1.47086 1.21205 0.81999 0.86406 0.80765 1.90726 1.29997 1.87407 1.38093 1.20238 1.00315 0.86264 1.03324 1.19799 0.98775 0.97644 0.92962 1.20870 0.97126 1.01847 1.03990 1.21156 1.02101 1.02733 0.99514 1.22261 0.89937 0.98829 1.03116 1.41931 1.20124 1.27901 1.24474 0.73749 1.21439 1.00445 0.82633 0.95552 1.21039 0.96808 0.85499 0.93640 0.94198 0.99311 0.93008 0.91956 0.92861 0.93870 0.91392 0.91096 0.92192 0.88129 0.92048 0.89510 0.86576 0.84569 0.84868 0.85635 0.84282 0.79060 0.91337 0.90855 0.92234 0.98097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 11.19 21.65 0.24 -56.83 16 2 C -0.06 -3.15 4.92 84.86 0.42 -2.73 16 3 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.26 -14.52 9.58 84.03 0.81 -13.71 16 8 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 9 N -0.61 -31.55 2.99 -699.12 -2.09 -33.64 16 10 C 0.18 8.98 5.30 86.36 0.46 9.44 16 11 C -0.13 -5.28 6.08 30.67 0.19 -5.09 16 12 C -0.10 -3.51 4.85 30.62 0.15 -3.36 16 13 C -0.08 -2.69 1.93 -10.71 -0.02 -2.71 16 14 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 15 C -0.08 -2.07 1.91 -10.86 -0.02 -2.10 16 16 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 17 C -0.12 -2.41 4.86 30.62 0.15 -2.26 16 18 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 19 C 0.10 1.06 6.34 86.36 0.55 1.61 16 20 N -0.61 -11.52 2.98 -819.73 -2.44 -13.96 16 21 C 0.51 11.11 7.69 87.66 0.67 11.78 16 22 O -0.58 -19.11 15.45 -3.05 -0.05 -19.15 16 23 C -0.06 -0.79 4.59 29.11 0.13 -0.66 16 24 C 0.02 0.41 5.66 41.08 0.23 0.64 16 25 C -0.21 -4.85 10.77 22.14 0.24 -4.62 16 26 C -0.23 -4.77 10.86 22.14 0.24 -4.53 16 27 C -0.01 -0.16 11.94 83.21 0.99 0.83 16 28 N -0.55 -8.37 6.07 -182.76 -1.11 -9.48 16 29 H 0.42 3.81 8.96 -92.71 -0.83 2.98 16 30 C 0.12 2.95 5.16 86.22 0.45 3.40 16 31 C 0.16 6.50 5.28 86.37 0.46 6.95 16 32 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.05 2.96 6.06 -2.39 -0.01 2.95 16 35 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 2.12 6.50 -2.39 -0.02 2.11 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.43 6.50 -2.38 -0.02 1.41 16 41 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.12 0.46 5.93 -2.39 -0.01 0.45 16 45 H 0.14 1.17 7.69 -2.39 -0.02 1.15 16 46 H 0.13 0.73 7.94 -2.39 -0.02 0.71 16 47 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 48 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 49 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 50 H 0.07 2.04 5.59 -2.39 -0.01 2.03 16 51 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 52 H 0.06 2.38 6.52 -2.39 -0.02 2.36 16 53 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -78.58 403.17 2.92 -75.66 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.07 Total: 18.67 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 6.27 Total: -8.65 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.40 Total: -113.91 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -78.58 2.92 -75.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053054245.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.787 kcal (2) G-P(sol) polarization free energy of solvation -78.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds