Wall clock time and date at job start Wed Apr 1 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99970 * 2 1 4 4 H 1.48498 * 109.47463 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47166 * 299.99812 * 3 2 1 6 6 H 1.48504 * 109.47412 * 59.99611 * 3 2 1 7 7 C 1.38817 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99660 * 164.17600 * 7 2 1 9 9 N 1.36933 * 119.99852 * 344.16940 * 7 2 1 10 10 C 1.46924 * 120.63427 * 333.19804 * 9 7 2 11 11 C 1.53202 * 108.77506 * 233.62915 * 10 9 7 12 12 C 1.53041 * 109.31205 * 305.36881 * 11 10 9 13 13 C 1.53038 * 109.54259 * 61.36120 * 12 11 10 14 14 H 1.08997 * 109.52145 * 58.60046 * 13 12 11 15 15 C 1.52997 * 109.49821 * 178.68112 * 13 12 11 16 16 H 1.09001 * 109.58785 * 308.79213 * 15 13 12 17 17 C 1.53200 * 109.69948 * 69.14801 * 15 13 12 18 18 C 1.53043 * 109.30940 * 174.49117 * 17 15 13 19 19 C 1.53034 * 109.53933 * 298.63304 * 18 17 15 20 20 C 1.52764 * 109.38235 * 61.24017 * 19 18 17 21 21 N 1.46920 * 109.58600 * 188.50175 * 15 13 12 22 22 C 1.34774 * 120.63152 * 6.44581 * 21 15 13 23 23 O 1.21280 * 120.00025 * 357.06113 * 22 21 15 24 24 C 1.50702 * 120.00235 * 177.06281 * 22 21 15 25 25 C 1.50699 * 109.47615 * 180.02562 * 24 22 21 26 26 C 1.34845 * 125.89304 * 84.99418 * 25 24 22 27 27 C 1.40890 * 107.41838 * 180.02562 * 26 25 24 28 28 C 1.34850 * 107.41562 * 359.97438 * 27 26 25 29 29 N 1.36340 * 108.21909 * 359.74422 * 28 27 26 30 30 H 0.96998 * 125.63651 * 180.26248 * 29 28 27 31 31 C 1.46930 * 120.62618 * 153.22391 * 9 7 2 32 32 H 0.96995 * 120.00244 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.58807 * 353.41536 * 10 9 7 34 34 H 1.08999 * 109.58797 * 113.70444 * 10 9 7 35 35 H 1.08998 * 109.49519 * 65.31623 * 11 10 9 36 36 H 1.08991 * 109.49731 * 185.41173 * 11 10 9 37 37 H 1.09001 * 109.45570 * 301.33925 * 12 11 10 38 38 H 1.08997 * 109.45602 * 181.38849 * 12 11 10 39 39 H 1.09005 * 109.49597 * 294.44096 * 17 15 13 40 40 H 1.08999 * 109.49819 * 54.50551 * 17 15 13 41 41 H 1.09003 * 109.45763 * 58.65405 * 18 17 15 42 42 H 1.09004 * 109.45814 * 178.61268 * 18 17 15 43 43 H 1.08997 * 109.50279 * 181.31853 * 19 18 17 44 44 H 1.08999 * 109.49800 * 301.41839 * 19 18 17 45 45 H 1.09006 * 109.50823 * 185.70866 * 20 19 18 46 46 H 1.09000 * 109.43152 * 65.42902 * 20 19 18 47 47 H 1.08996 * 109.47396 * 59.99689 * 24 22 21 48 48 H 1.09007 * 109.46932 * 299.99713 * 24 22 21 49 49 H 1.08006 * 126.29146 * 0.02562 * 26 25 24 50 50 H 1.08001 * 126.29207 * 180.02562 * 27 26 25 51 51 H 1.08001 * 125.88718 * 180.02562 * 28 27 26 52 52 H 1.08999 * 109.59079 * 6.57444 * 31 9 7 53 53 H 1.09007 * 109.57924 * 246.15361 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0595 -1.2200 -0.2545 9 7 1.3645 -2.3654 0.3246 10 6 0.1875 -2.3484 1.2037 11 6 0.4228 -3.3235 2.3617 12 6 0.7669 -4.7043 1.7986 13 6 2.0528 -4.6148 0.9736 14 1 2.8633 -4.2448 1.6014 15 6 2.4137 -6.0019 0.4384 16 1 2.4126 -6.7213 1.2574 17 6 1.3927 -6.4284 -0.6212 18 6 1.8368 -7.7521 -1.2480 19 6 3.1930 -7.5651 -1.9318 20 6 4.2321 -7.1495 -0.8919 21 7 3.7463 -5.9602 -0.1789 22 6 4.5065 -4.8503 -0.0972 23 8 4.0714 -3.8558 0.4435 24 6 5.8971 -4.8450 -0.6779 25 6 6.5294 -3.4953 -0.4555 26 6 7.1808 -3.1012 0.6574 27 6 7.6102 -1.7758 0.4477 28 6 7.2053 -1.4107 -0.7856 29 7 6.5466 -2.4641 -1.3473 30 1 6.1527 -2.4767 -2.2336 31 6 1.8360 -3.6544 -0.2000 32 1 -0.4850 0.8400 -0.0004 33 1 0.0398 -1.3427 1.5972 34 1 -0.6941 -2.6533 0.6400 35 1 1.2484 -2.9654 2.9767 36 1 -0.4801 -3.3926 2.9683 37 1 -0.0485 -5.0510 1.1638 38 1 0.9106 -5.4060 2.6202 39 1 0.4160 -6.5564 -0.1545 40 1 1.3290 -5.6626 -1.3941 41 1 1.9237 -8.5110 -0.4703 42 1 1.0993 -8.0704 -1.9849 43 1 3.4978 -8.5020 -2.3980 44 1 3.1128 -6.7888 -2.6927 45 1 5.1734 -6.9176 -1.3904 46 1 4.3824 -7.9643 -0.1837 47 1 5.8453 -5.0506 -1.7471 48 1 6.4979 -5.6122 -0.1892 49 1 7.3436 -3.6928 1.5462 50 1 8.1629 -1.1648 1.1460 51 1 7.3774 -0.4510 -1.2503 52 1 2.7759 -3.5104 -0.7328 53 1 1.0891 -4.0682 -0.8776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053108092.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:12 Heat of formation + Delta-G solvation = 42.932780 kcal Electronic energy + Delta-G solvation = -33319.151779 eV Core-core repulsion = 29385.311277 eV Total energy + Delta-G solvation = -3933.840502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.20624 -41.51413 -38.79138 -38.16158 -35.36022 -33.94548 -33.22846 -32.28199 -32.04949 -31.73272 -29.63530 -27.68095 -27.20446 -25.70755 -24.75326 -23.80158 -22.65360 -21.89867 -21.43840 -21.05458 -20.45506 -19.59988 -18.64787 -18.26439 -17.60899 -16.93353 -16.53679 -16.48665 -15.74100 -15.62040 -15.28303 -15.10772 -15.05061 -14.81629 -14.63301 -14.36646 -14.32207 -14.15873 -13.99875 -13.90157 -13.81193 -13.41943 -13.14754 -13.08124 -12.98714 -12.87539 -12.70990 -12.53450 -12.25228 -12.04325 -12.01489 -11.91252 -11.66633 -11.54163 -11.51285 -11.28837 -11.03467 -10.80144 -10.50513 -9.74196 -9.65692 -9.24490 -8.83404 -8.55014 -7.81853 -5.23196 1.36257 1.36696 1.39719 1.51570 1.87439 2.07826 2.35100 2.50959 2.59992 3.29386 3.62611 3.81388 3.89321 3.98688 4.02273 4.14897 4.21468 4.23794 4.28573 4.32154 4.33952 4.44405 4.46020 4.57246 4.63137 4.66829 4.69700 4.76405 4.82380 4.89403 4.93110 4.97742 5.02546 5.03339 5.08947 5.16783 5.18628 5.29010 5.31045 5.38749 5.45440 5.46716 5.49583 5.53393 5.60362 5.62997 5.68969 5.79842 6.04661 6.15644 6.29972 6.45670 6.66296 6.84958 7.20783 7.53936 7.98376 8.47162 9.23722 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007807 B = 0.006021 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.534596 B = 4649.348103 C = 7333.457016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.062 4.062 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.048 0.952 9 N -0.603 5.603 10 C 0.174 3.826 11 C -0.130 4.130 12 C -0.104 4.104 13 C -0.094 4.094 14 H 0.084 0.916 15 C 0.163 3.837 16 H 0.083 0.917 17 C -0.135 4.135 18 C -0.113 4.113 19 C -0.133 4.133 20 C 0.103 3.897 21 N -0.608 5.608 22 C 0.482 3.518 23 O -0.524 6.524 24 C -0.060 4.060 25 C 0.030 3.970 26 C -0.208 4.208 27 C -0.226 4.226 28 C -0.021 4.021 29 N -0.551 5.551 30 H 0.419 0.581 31 C 0.177 3.823 32 H 0.246 0.754 33 H 0.050 0.950 34 H -0.009 1.009 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.050 0.950 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.119 0.881 48 H 0.139 0.861 49 H 0.133 0.867 50 H 0.138 0.862 51 H 0.178 0.822 52 H 0.055 0.945 53 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.451 -20.602 -3.672 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.255 4.255 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.066 0.934 9 N -0.325 5.325 10 C 0.048 3.952 11 C -0.169 4.169 12 C -0.142 4.142 13 C -0.114 4.114 14 H 0.101 0.899 15 C 0.060 3.940 16 H 0.101 0.899 17 C -0.173 4.173 18 C -0.151 4.151 19 C -0.171 4.171 20 C -0.019 4.019 21 N -0.343 5.343 22 C 0.270 3.730 23 O -0.401 6.401 24 C -0.100 4.100 25 C -0.084 4.084 26 C -0.232 4.232 27 C -0.251 4.251 28 C -0.153 4.153 29 N -0.146 5.146 30 H 0.256 0.744 31 C 0.052 3.948 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.009 0.991 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.069 0.931 45 H 0.124 0.876 46 H 0.107 0.893 47 H 0.137 0.863 48 H 0.157 0.843 49 H 0.151 0.849 50 H 0.155 0.845 51 H 0.195 0.805 52 H 0.073 0.927 53 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 12.101 -19.951 -3.551 23.602 hybrid contribution -0.380 1.778 -0.265 1.838 sum 11.721 -18.172 -3.816 21.958 Atomic orbital electron populations 1.70181 1.06290 1.25114 1.57445 1.25641 0.96074 1.00900 1.02916 0.85306 0.78369 0.80627 0.76900 1.19957 1.21529 1.21808 1.19335 0.91551 0.86112 1.38457 0.93396 1.44214 1.32150 1.02516 1.53590 1.20601 0.87400 0.97625 0.89561 1.21979 0.99879 0.96921 0.98102 1.21548 0.97659 0.95851 0.99136 1.22066 0.97116 0.93857 0.98384 0.89865 1.21181 0.81949 0.96227 0.94683 0.89944 1.22065 0.98544 0.98294 0.98401 1.21501 0.97417 0.95854 1.00308 1.21851 0.94957 1.02587 0.97683 1.21954 0.98190 0.86831 0.94876 1.48136 1.16626 1.14319 1.55212 1.21104 0.88006 0.82718 0.81140 1.90966 1.71932 1.34432 1.42788 1.20254 0.92179 0.93375 1.04209 1.19898 1.04939 0.91630 0.91903 1.20768 1.06743 0.97240 0.98473 1.21095 1.08878 0.97378 0.97745 1.22122 1.02886 0.93820 0.96449 1.41946 1.44903 1.11599 1.16111 0.74395 1.21306 0.95154 0.84910 0.93393 0.94480 0.93114 0.99139 0.94482 0.91598 0.92808 0.91037 0.91221 0.93555 0.90325 0.91405 0.87955 0.93097 0.87614 0.89325 0.86276 0.84304 0.84922 0.84454 0.80460 0.92713 0.99415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.38 11.02 21.65 0.24 -60.14 16 2 C -0.06 -3.82 4.96 84.86 0.42 -3.40 16 3 Si 0.96 49.79 29.58 68.60 2.03 51.82 16 4 H -0.27 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16 7 C -0.22 -13.84 9.61 84.04 0.81 -13.04 16 8 H 0.05 3.08 7.87 -2.91 -0.02 3.06 16 9 N -0.60 -34.09 3.00 -699.08 -2.10 -36.19 16 10 C 0.17 9.49 5.31 86.37 0.46 9.95 16 11 C -0.13 -5.62 6.08 30.68 0.19 -5.43 16 12 C -0.10 -3.74 4.96 30.62 0.15 -3.58 16 13 C -0.09 -3.56 1.57 -10.72 -0.02 -3.57 16 14 H 0.08 3.72 5.66 -26.91 -0.15 3.57 16 15 C 0.16 4.35 2.63 44.98 0.12 4.46 16 16 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 17 C -0.13 -3.28 4.66 30.68 0.14 -3.14 16 18 C -0.11 -1.77 5.88 30.62 0.18 -1.59 16 19 C -0.13 -1.66 6.06 30.53 0.19 -1.47 16 20 C 0.10 1.27 6.31 86.22 0.54 1.82 16 21 N -0.61 -13.86 2.95 -795.84 -2.35 -16.21 16 22 C 0.48 13.77 6.77 87.66 0.59 14.36 16 23 O -0.52 -21.48 9.33 -3.03 -0.03 -21.51 16 24 C -0.06 -1.21 4.61 29.10 0.13 -1.08 16 25 C 0.03 0.83 5.66 41.08 0.23 1.07 16 26 C -0.21 -6.40 10.76 22.14 0.24 -6.16 16 27 C -0.23 -7.05 10.86 22.14 0.24 -6.81 16 28 C -0.02 -0.62 11.94 83.21 0.99 0.37 16 29 N -0.55 -15.29 6.07 -182.77 -1.11 -16.40 16 30 H 0.42 9.71 8.96 -92.71 -0.83 8.88 16 31 C 0.18 8.28 4.41 86.36 0.38 8.66 16 32 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.05 3.12 5.91 -2.39 -0.01 3.11 16 34 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.05 1.88 6.92 -2.39 -0.02 1.86 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 1.71 7.02 -2.38 -0.02 1.70 16 40 H 0.05 1.43 5.89 -2.39 -0.01 1.41 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.11 0.81 5.95 -2.38 -0.01 0.80 16 46 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.12 1.70 7.56 -2.39 -0.02 1.68 16 48 H 0.14 1.89 8.06 -2.38 -0.02 1.87 16 49 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 50 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 51 H 0.18 4.25 8.06 -2.91 -0.02 4.22 16 52 H 0.05 2.70 4.92 -4.44 -0.02 2.68 16 53 H -0.01 -0.56 5.91 -2.38 -0.01 -0.57 16 Total: -1.00 -83.16 390.86 2.60 -80.56 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.07 Total: 26.66 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.99 Total: -8.58 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -5.32 Total: -128.95 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.03 Total: -21.51 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.03 Total: 51.82 kcal Total: -83.16 2.60 -80.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053108092.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.489 kcal (2) G-P(sol) polarization free energy of solvation -83.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds