Wall clock time and date at job start Wed Apr 1 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40450 * 126.82104 * 2 1 4 4 C 1.30714 * 106.78849 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.52136 * 179.97438 * 4 3 2 6 6 C 1.52996 * 117.50082 * 8.77437 * 5 4 3 7 7 C 1.52994 * 117.50161 * 300.11076 * 5 4 3 8 8 N 1.33234 * 108.94833 * 0.24423 * 4 3 2 9 9 C 1.30835 * 109.82890 * 359.58956 * 8 4 3 10 10 C 1.50699 * 125.95892 * 180.12247 * 9 8 4 11 11 C 1.50696 * 109.47463 * 270.32824 * 10 9 8 12 12 O 1.21280 * 119.99663 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00160 * 179.97438 * 11 10 9 14 14 C 1.47394 * 135.85597 * 359.64228 * 13 11 10 15 15 C 1.52077 * 87.41328 * 154.38097 * 14 13 11 16 16 C 1.47401 * 135.85494 * 180.02562 * 13 11 10 17 17 C 1.53513 * 117.21014 * 267.27656 * 15 14 13 18 18 C 1.54624 * 102.70204 * 262.92919 * 17 15 14 19 19 N 1.47141 * 107.37907 * 339.38894 * 18 17 15 20 20 C 1.36942 * 125.57948 * 179.11923 * 19 18 17 21 21 H 1.07999 * 119.99980 * 179.97438 * 20 19 18 22 22 C 1.38816 * 119.99874 * 359.97438 * 20 19 18 23 23 N 1.31614 * 120.00293 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99776 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47483 * 89.99936 * 24 22 20 26 26 H 1.48508 * 109.47045 * 209.99826 * 24 22 20 27 27 H 1.48497 * 109.47472 * 329.99689 * 24 22 20 28 28 C 1.47747 * 108.84280 * 359.08739 * 19 18 17 29 29 H 1.09002 * 109.47043 * 90.01891 * 1 2 3 30 30 H 1.09001 * 109.47058 * 210.02319 * 1 2 3 31 31 H 1.09005 * 109.46890 * 330.02274 * 1 2 3 32 32 H 1.09006 * 115.54488 * 154.44218 * 5 4 3 33 33 H 1.09002 * 117.49661 * 359.97438 * 6 5 4 34 34 H 1.08992 * 117.49975 * 145.02129 * 6 5 4 35 35 H 1.09001 * 117.50009 * 214.98154 * 7 5 4 36 36 H 1.09007 * 117.50074 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.47435 * 30.33282 * 10 9 8 38 38 H 1.08999 * 109.46784 * 150.32929 * 10 9 8 39 39 H 1.08999 * 113.53868 * 268.99208 * 14 13 11 40 40 H 1.08995 * 113.54272 * 39.66683 * 14 13 11 41 41 H 1.09001 * 113.53949 * 320.33368 * 16 13 11 42 42 H 1.08996 * 113.53999 * 90.93581 * 16 13 11 43 43 H 1.08995 * 110.76464 * 21.23895 * 17 15 14 44 44 H 1.09006 * 110.75823 * 144.62744 * 17 15 14 45 45 H 1.09002 * 109.86030 * 98.83924 * 18 17 15 46 46 H 1.08997 * 109.86534 * 219.80259 * 18 17 15 47 47 H 0.96994 * 120.00631 * 180.02562 * 23 22 20 48 48 H 1.09002 * 110.40755 * 263.50890 * 28 19 18 49 49 H 1.09004 * 110.41057 * 141.07853 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 6 4.7776 1.5290 0.0002 6 6 4.6015 3.0348 0.2062 7 6 4.9754 2.4892 -1.1743 8 7 3.5096 -0.6555 -0.0045 9 6 2.2706 -1.0760 0.0005 10 6 1.8247 -2.5155 -0.0001 11 6 1.6772 -2.9952 -1.4210 12 8 1.9116 -2.2424 -2.3425 13 7 1.2858 -4.2610 -1.6677 14 6 0.9286 -5.4356 -0.8522 15 6 0.0882 -5.9100 -2.0276 16 6 1.0351 -5.0752 -2.8706 17 6 -1.3934 -5.5086 -2.0384 18 6 -2.0887 -6.7588 -1.4515 19 7 -1.1665 -7.8933 -1.6178 20 6 -1.4034 -9.1790 -1.2102 21 1 -0.6604 -9.9445 -1.3789 22 6 -2.5984 -9.4983 -0.5802 23 7 -3.5036 -8.5654 -0.3741 24 14 -2.9218 -11.2523 -0.0249 25 1 -2.4291 -11.4305 1.3647 26 1 -4.3808 -11.5253 -0.0716 27 1 -2.2127 -12.1957 -0.9262 28 6 0.0566 -7.4184 -2.2971 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 5.6670 1.0635 0.4250 33 1 3.5867 3.4089 0.3415 34 1 5.3752 3.5600 0.7660 35 1 5.9949 2.6558 -1.5221 36 1 4.2068 2.5042 -1.9472 37 1 2.5668 -3.1260 0.5143 38 1 0.8666 -2.5992 0.5130 39 1 1.7750 -6.0860 -0.6315 40 1 0.3423 -5.1891 0.0329 41 1 0.5377 -4.5275 -3.6711 42 1 1.9116 -5.6237 -3.2154 43 1 -1.5628 -4.6386 -1.4041 44 1 -1.7348 -5.3185 -3.0561 45 1 -2.2980 -6.6036 -0.3931 46 1 -3.0175 -6.9523 -1.9881 47 1 -4.3384 -8.7884 0.0664 48 1 -0.0040 -7.6118 -3.3681 49 1 0.9381 -7.8989 -1.8725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073445284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:50 Heat of formation + Delta-G solvation = 132.985153 kcal Electronic energy + Delta-G solvation = -29919.205511 eV Core-core repulsion = 25885.729630 eV Total energy + Delta-G solvation = -4033.475881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.29794 -41.88696 -39.70054 -38.17973 -37.28827 -34.94308 -34.12916 -33.71601 -31.45072 -30.60982 -29.55195 -28.29127 -27.22702 -27.03713 -25.36231 -24.76631 -23.32211 -22.17920 -22.01997 -21.06310 -20.42547 -19.63206 -18.55285 -18.25417 -18.07050 -17.30971 -16.88669 -16.76234 -16.54269 -16.39499 -15.94430 -15.64357 -15.55998 -15.33010 -14.79298 -14.36936 -14.26986 -14.10962 -14.04575 -13.72049 -13.62530 -13.26175 -13.23087 -13.13147 -12.84393 -12.74949 -12.73540 -12.43066 -12.21789 -12.00745 -11.93989 -11.86716 -11.78241 -11.65576 -11.49561 -11.19536 -11.09924 -11.06925 -10.74925 -10.63435 -10.22325 -9.76944 -8.81218 -7.78796 -5.12516 0.40285 1.24942 1.45816 1.51447 1.51904 1.53784 1.60250 1.89250 2.54627 2.73228 2.97780 3.23650 3.32120 3.38474 3.45938 3.52039 3.63728 3.84666 3.87247 3.95486 4.04293 4.09445 4.18919 4.23412 4.26312 4.35563 4.43833 4.53491 4.57309 4.62047 4.63804 4.72730 4.76052 4.76428 4.88419 4.90584 4.97035 5.08794 5.09172 5.21675 5.21947 5.24165 5.24445 5.34703 5.54547 5.72560 5.73609 5.85796 6.26483 6.63871 6.97405 7.00535 7.17717 7.85148 8.48589 9.31408 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.026614 B = 0.001978 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.844912 B =14155.174806 C =14438.242540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.375 5.375 3 N -0.339 5.339 4 C 0.240 3.760 5 C -0.093 4.093 6 C -0.143 4.143 7 C -0.155 4.155 8 N -0.560 5.560 9 C 0.294 3.706 10 C -0.054 4.054 11 C 0.549 3.451 12 O -0.584 6.584 13 N -0.637 5.637 14 C 0.125 3.875 15 C -0.099 4.099 16 C 0.125 3.875 17 C -0.101 4.101 18 C 0.189 3.811 19 N -0.625 5.625 20 C -0.232 4.232 21 H 0.085 0.915 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.972 3.028 25 H -0.286 1.286 26 H -0.301 1.301 27 H -0.271 1.271 28 C 0.150 3.850 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.001 0.999 47 H 0.244 0.756 48 H 0.029 0.971 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.900 17.861 2.544 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.165 5.165 3 N -0.168 5.168 4 C -0.041 4.041 5 C -0.113 4.113 6 C -0.181 4.181 7 C -0.194 4.194 8 N -0.288 5.288 9 C 0.017 3.983 10 C -0.096 4.096 11 C 0.338 3.662 12 O -0.465 6.465 13 N -0.371 5.371 14 C 0.004 3.996 15 C -0.101 4.101 16 C 0.003 3.997 17 C -0.140 4.140 18 C 0.064 3.936 19 N -0.351 5.351 20 C -0.362 4.362 21 H 0.103 0.897 22 C -0.259 4.259 23 N -0.601 5.601 24 Si 0.801 3.199 25 H -0.213 1.213 26 H -0.228 1.228 27 H -0.196 1.196 28 C 0.025 3.975 29 H 0.097 0.903 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.019 0.981 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.888 18.902 2.203 22.983 hybrid contribution -1.079 -1.337 0.067 1.719 sum 11.810 17.564 2.270 21.287 Atomic orbital electron populations 1.22343 0.71560 1.07023 1.04707 1.50338 1.09090 1.03248 1.53777 1.77827 1.01714 1.08664 1.28583 1.23670 0.93421 0.89395 0.97648 1.20289 0.92744 0.90679 1.07634 1.23094 1.03926 0.92020 0.99037 1.23091 1.04002 1.00893 0.91398 1.70186 1.20760 1.11628 1.26242 1.23726 0.86034 0.92490 0.96027 1.20227 1.07485 0.86645 0.95212 1.19942 0.75419 0.80066 0.90741 1.90747 1.52381 1.55380 1.47946 1.49729 1.66050 1.08869 1.12455 1.23043 0.97738 0.83319 0.95545 1.21988 0.94893 0.95500 0.97717 1.22808 0.97925 0.89391 0.89598 1.22268 0.92793 0.97708 1.01187 1.20932 0.90993 0.84733 0.96965 1.44815 1.16225 1.05474 1.68611 1.19437 1.00723 0.85701 1.30289 0.89727 1.25549 0.96953 1.01207 1.02227 1.70157 1.08400 1.32639 1.48856 0.85171 0.76286 0.80232 0.78201 1.21315 1.22757 1.19573 1.21304 0.89645 0.90933 0.95626 0.90260 0.86057 0.87420 0.84101 0.89162 0.85053 0.85306 0.90515 0.83093 0.83002 0.87173 0.88779 0.90709 0.87677 0.90247 0.91336 0.96463 0.98099 0.94631 0.95282 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 11.33 127.77 1.45 2.75 16 2 N -0.37 -9.32 4.04 -359.87 -1.45 -10.77 16 3 N -0.34 -9.65 12.24 -51.33 -0.63 -10.28 16 4 C 0.24 6.80 7.69 138.63 1.07 7.87 16 5 C -0.09 -1.92 6.33 -11.54 -0.07 -1.99 16 6 C -0.14 -2.19 10.14 30.62 0.31 -1.88 16 7 C -0.16 -2.64 10.24 30.62 0.31 -2.32 16 8 N -0.56 -16.94 11.19 -179.73 -2.01 -18.95 16 9 C 0.29 7.63 6.48 138.23 0.90 8.53 16 10 C -0.05 -1.02 5.85 29.10 0.17 -0.85 16 11 C 0.55 14.07 8.07 87.66 0.71 14.78 16 12 O -0.58 -20.59 16.81 -3.03 -0.05 -20.64 16 13 N -0.64 -14.57 3.70 -859.74 -3.18 -17.75 16 14 C 0.13 2.65 7.78 83.76 0.65 3.30 16 15 C -0.10 -2.64 1.06 -52.61 -0.06 -2.70 16 16 C 0.13 2.90 8.03 83.67 0.67 3.57 16 17 C -0.10 -3.17 6.41 31.32 0.20 -2.97 16 18 C 0.19 8.37 5.39 86.81 0.47 8.84 16 19 N -0.62 -28.61 3.41 -693.48 -2.36 -30.98 16 20 C -0.23 -11.99 10.28 84.03 0.86 -11.13 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 22 C -0.07 -3.58 5.49 84.86 0.47 -3.11 16 23 N -0.95 -54.35 10.30 21.65 0.22 -54.13 16 24 Si 0.97 43.63 29.55 68.60 2.03 45.66 16 25 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 C 0.15 5.05 6.70 86.23 0.58 5.62 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.12 1.12 7.11 -2.39 -0.02 1.10 16 31 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.14 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.09 1.63 7.88 -2.39 -0.02 1.61 16 34 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.15 1.72 7.13 -2.39 -0.02 1.70 16 39 H 0.11 2.00 8.06 -2.39 -0.02 1.98 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 42 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 2.18 8.07 -2.39 -0.02 2.17 16 44 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.02 0.85 7.39 -2.39 -0.02 0.84 16 46 H 0.00 0.04 7.49 -2.39 -0.02 0.02 16 47 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 48 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 1.80 8.00 -2.39 -0.02 1.78 16 Total: -1.00 -78.98 404.75 2.19 -76.79 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.95 Total: 12.73 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 8.68 Total: 28.31 kcal Atomic # 7 Polarization: -133.44 SS G_CDS: -9.41 Total: -142.85 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -78.98 2.19 -76.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073445284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.776 kcal (2) G-P(sol) polarization free energy of solvation -78.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds