Wall clock time and date at job start Wed Apr 1 2020 03:12:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46500 * 120.00426 * 2 1
4 4 C 1.38404 * 119.99938 * 179.97438 * 2 1 3
5 5 C 1.39888 * 119.99350 * 352.01485 * 4 2 1
6 6 N 1.31462 * 120.01123 * 179.76747 * 5 4 2
7 7 C 1.33276 * 120.00710 * 0.45782 * 6 5 4
8 8 C 1.47816 * 120.00206 * 179.79366 * 7 6 5
9 9 O 1.21562 * 120.00178 * 179.72463 * 8 7 6
10 10 N 1.34777 * 120.00212 * 359.72425 * 8 7 6
11 11 C 1.46499 * 120.00650 * 179.97438 * 10 8 7
12 12 H 1.09006 * 112.87931 * 23.65829 * 11 10 8
13 13 C 1.53943 * 113.74855 * 252.23393 * 11 10 8
14 14 C 1.53950 * 87.29431 * 270.24613 * 13 11 10
15 15 H 1.09001 * 113.75014 * 89.75223 * 14 13 11
16 16 N 1.46507 * 113.66315 * 220.79882 * 14 13 11
17 17 C 1.36936 * 119.99443 * 251.91138 * 16 14 13
18 18 H 1.07999 * 120.00644 * 0.27414 * 17 16 14
19 19 C 1.38824 * 119.99794 * 180.27686 * 17 16 14
20 20 N 1.31621 * 119.99734 * 359.97438 * 19 17 16
21 21 Si 1.86794 * 119.99896 * 180.02562 * 19 17 16
22 22 H 1.48495 * 109.47407 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47079 * 120.00088 * 21 19 17
24 24 H 1.48498 * 109.46837 * 239.99635 * 21 19 17
25 25 C 1.52906 * 113.66320 * 154.99824 * 11 10 8
26 26 C 1.52909 * 121.13590 * 215.38501 * 25 11 10
27 27 C 1.53957 * 86.78064 * 100.82374 * 26 25 11
28 28 C 1.52909 * 121.14037 * 323.94815 * 25 11 10
29 29 C 1.39409 * 119.99754 * 359.51890 * 7 6 5
30 30 N 1.32046 * 119.98221 * 0.25092 * 29 7 6
31 31 H 1.08992 * 109.47073 * 174.56572 * 1 2 3
32 32 H 1.09000 * 109.47024 * 294.56897 * 1 2 3
33 33 H 1.08999 * 109.46745 * 54.56000 * 1 2 3
34 34 H 1.09001 * 109.46850 * 270.00039 * 3 2 1
35 35 H 1.09002 * 109.47169 * 29.99629 * 3 2 1
36 36 H 1.08995 * 109.47128 * 149.99703 * 3 2 1
37 37 H 1.08001 * 119.99643 * 359.97438 * 5 4 2
38 38 H 0.97007 * 119.99901 * 359.97438 * 10 8 7
39 39 H 1.08998 * 113.57780 * 155.64760 * 13 11 10
40 40 H 1.08994 * 113.58609 * 24.84997 * 13 11 10
41 41 H 0.96995 * 120.00072 * 72.18698 * 16 14 13
42 42 H 0.96998 * 119.99949 * 180.02562 * 20 19 17
43 43 H 1.09001 * 113.66373 * 215.29519 * 26 25 11
44 44 H 1.08997 * 113.66355 * 346.35346 * 26 25 11
45 45 H 1.08993 * 113.58035 * 270.12827 * 27 26 25
46 46 H 1.08996 * 113.65056 * 139.34830 * 27 26 25
47 47 H 1.08998 * 113.65732 * 13.65502 * 28 25 11
48 48 H 1.09003 * 113.65848 * 144.70329 * 28 25 11
49 49 H 1.07996 * 120.00522 * 180.22881 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.1570 -1.1986 0.0005
5 6 1.4676 -2.4041 0.1694
6 7 2.1240 -3.5431 0.1654
7 6 3.4476 -3.5490 0.0096
8 6 4.1861 -4.8295 0.0096
9 8 5.3928 -4.8353 -0.1375
10 7 3.5216 -5.9907 0.1728
11 6 4.2533 -7.2599 0.1724
12 1 5.3030 -7.1440 0.4425
13 6 4.0312 -8.1031 -1.0963
14 6 2.8385 -8.7502 -0.3692
15 1 1.8948 -8.2265 -0.5216
16 7 2.7302 -10.1949 -0.5876
17 6 1.7297 -10.6946 -1.3777
18 1 1.0231 -10.0236 -1.8435
19 6 1.6235 -12.0639 -1.5801
20 7 2.4849 -12.8817 -1.0129
21 14 0.2591 -12.7456 -2.6585
22 1 -0.5696 -11.6268 -3.1748
23 1 0.8538 -13.4888 -3.7984
24 1 -0.5917 -13.6634 -1.8592
25 6 3.5430 -8.3781 0.9360
26 6 4.3330 -9.4173 1.7322
27 6 3.9686 -8.6049 2.9881
28 6 2.7473 -8.0850 2.2084
29 6 4.1350 -2.3480 -0.1592
30 7 3.4749 -1.2044 -0.1597
31 1 -0.3633 -1.0230 -0.0973
32 1 -0.3633 0.4273 0.9346
33 1 -0.3633 0.5959 -0.8373
34 1 2.3793 1.5833 -1.0277
35 1 1.6086 2.0284 0.5138
36 1 3.1500 1.1383 0.5139
37 1 0.3955 -2.3992 0.2997
38 1 2.5587 -5.9861 0.2906
39 1 4.8439 -8.7987 -1.3053
40 1 3.7435 -7.5137 -1.9668
41 1 3.3647 -10.7975 -0.1693
42 1 2.4110 -13.8384 -1.1546
43 1 3.8903 -10.4132 1.7117
44 1 5.3997 -9.4217 1.5083
45 1 4.6939 -7.8284 3.2308
46 1 3.7067 -9.2222 3.8475
47 1 2.5472 -7.0250 2.3647
48 1 1.8589 -8.7064 2.3216
49 1 5.2071 -2.3530 -0.2892
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001078629955.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:12:41
Heat of formation + Delta-G solvation = 91.655778 kcal
Electronic energy + Delta-G solvation = -30015.199483 eV
Core-core repulsion = 25979.931425 eV
Total energy + Delta-G solvation = -4035.268058 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.50788 -40.48253 -38.78747 -37.30020 -35.03803 -34.54312 -33.90891 -32.24025
-31.14580 -29.69384 -28.98712 -26.73367 -25.40906 -24.77896 -24.44406 -24.02343
-23.18739 -22.09803 -20.89746 -20.07791 -18.53266 -18.18192 -17.83132 -17.34456
-16.82821 -16.13344 -15.81523 -15.49257 -15.25018 -15.03274 -14.91272 -14.88418
-14.52012 -13.96917 -13.91452 -13.60572 -13.28592 -13.10597 -12.84217 -12.61233
-12.53356 -12.40430 -12.05806 -11.80042 -11.79592 -11.62840 -11.57065 -11.31825
-10.91688 -10.79514 -10.62281 -10.47538 -10.25797 -10.13375 -10.05052 -9.78572
-9.64041 -9.36078 -9.27350 -8.79454 -8.68735 -8.16697 -6.92253 -5.76782
-3.04565 0.38643 0.85848 2.24215 2.72577 3.15671 3.43492 3.49483
3.51496 3.67021 3.84398 3.95142 4.05343 4.55219 4.59731 4.66619
4.75458 4.76788 4.82886 4.91880 5.04536 5.07429 5.09318 5.12719
5.26262 5.29085 5.31955 5.34153 5.49302 5.70081 5.78509 5.91198
5.98255 6.08613 6.14483 6.15463 6.20275 6.26557 6.28660 6.43540
6.48403 6.56135 6.59944 6.70990 6.84346 6.99975 7.04110 7.12389
7.44964 7.71918 7.73877 8.29552 8.42281 9.53768 10.12252 10.47312
11.45710
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.013643 B = 0.002402 C = 0.002201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2051.832584 B =11653.417893 C =12720.740323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.085 3.915
2 N -0.600 5.600
3 C 0.095 3.905
4 C 0.370 3.630
5 C -0.006 4.006
6 N -0.372 5.372
7 C -0.045 4.045
8 C 0.583 3.417
9 O -0.541 6.541
10 N -0.684 5.684
11 C 0.141 3.859
12 H 0.098 0.902
13 C -0.174 4.174
14 C 0.180 3.820
15 H 0.075 0.925
16 N -0.708 5.708
17 C -0.240 4.240
18 H 0.071 0.929
19 C -0.014 4.014
20 N -0.932 5.932
21 Si 0.906 3.094
22 H -0.281 1.281
23 H -0.292 1.292
24 H -0.292 1.292
25 C -0.125 4.125
26 C -0.104 4.104
27 C -0.140 4.140
28 C -0.123 4.123
29 C 0.171 3.829
30 N -0.508 5.508
31 H 0.083 0.917
32 H 0.065 0.935
33 H 0.069 0.931
34 H 0.054 0.946
35 H 0.069 0.931
36 H 0.078 0.922
37 H 0.173 0.827
38 H 0.410 0.590
39 H 0.087 0.913
40 H 0.058 0.942
41 H 0.387 0.613
42 H 0.255 0.745
43 H 0.097 0.903
44 H 0.063 0.937
45 H 0.071 0.929
46 H 0.062 0.938
47 H 0.059 0.941
48 H 0.085 0.915
49 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.231 27.477 6.218 28.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.313 5.313
3 C -0.048 4.048
4 C 0.130 3.870
5 C -0.179 4.179
6 N -0.088 5.088
7 C -0.185 4.185
8 C 0.368 3.632
9 O -0.419 6.419
10 N -0.333 5.333
11 C 0.036 3.964
12 H 0.116 0.884
13 C -0.216 4.216
14 C 0.068 3.932
15 H 0.093 0.907
16 N -0.346 5.346
17 C -0.371 4.371
18 H 0.089 0.911
19 C -0.209 4.209
20 N -0.580 5.580
21 Si 0.737 3.263
22 H -0.206 1.206
23 H -0.219 1.219
24 H -0.219 1.219
25 C -0.127 4.127
26 C -0.142 4.142
27 C -0.178 4.178
28 C -0.160 4.160
29 C 0.009 3.991
30 N -0.230 5.230
31 H 0.102 0.898
32 H 0.084 0.916
33 H 0.087 0.913
34 H 0.073 0.927
35 H 0.088 0.912
36 H 0.097 0.903
37 H 0.189 0.811
38 H 0.246 0.754
39 H 0.105 0.895
40 H 0.077 0.923
41 H 0.222 0.778
42 H 0.064 0.936
43 H 0.116 0.884
44 H 0.082 0.918
45 H 0.090 0.910
46 H 0.080 0.920
47 H 0.078 0.922
48 H 0.103 0.897
49 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -1.602 27.527 5.982 28.215
hybrid contribution -1.074 -0.499 -0.530 1.297
sum -2.676 27.028 5.452 27.702
Atomic orbital electron populations
1.21924 0.77513 1.03916 1.02387 1.46212 1.05724 1.03043 1.76275
1.21663 0.97486 0.83601 1.02000 1.19637 0.89919 0.87596 0.89829
1.23240 1.01458 0.86672 1.06522 1.68143 1.07647 1.28625 1.04367
1.21726 0.90766 0.95738 1.10302 1.17446 0.86366 0.82617 0.76790
1.90786 1.13354 1.86949 1.50769 1.45428 1.11791 1.04831 1.71236
1.21565 0.95882 0.80997 0.97984 0.88449 1.24284 1.02551 0.98598
0.96182 1.21399 0.94354 0.86667 0.90819 0.90691 1.42377 1.34808
1.00149 1.57283 1.19344 1.05685 0.90663 1.21434 0.91140 1.24747
0.99147 0.96086 1.00966 1.69664 1.37789 1.02544 1.48019 0.86134
0.81452 0.78797 0.79914 1.20592 1.21917 1.21934 1.23429 0.98260
0.96108 0.94951 1.22463 0.99321 0.98298 0.94102 1.22823 0.98250
0.99568 0.97111 1.22629 0.97402 1.00334 0.95669 1.23513 1.01537
0.85907 0.88148 1.68143 1.06371 1.29443 1.19088 0.89834 0.91600
0.91286 0.92730 0.91243 0.90292 0.81064 0.75426 0.89491 0.92285
0.77805 0.93556 0.88446 0.91845 0.91016 0.91955 0.92213 0.89663
0.80080
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.28 10.56 59.85 0.63 0.92 16
2 N -0.60 -3.99 3.37 -189.51 -0.64 -4.63 16
3 C 0.10 0.50 10.44 59.85 0.62 1.13 16
4 C 0.37 3.51 7.34 -155.01 -1.14 2.37 16
5 C -0.01 -0.06 10.42 -17.09 -0.18 -0.24 16
6 N -0.37 -4.43 9.69 -9.44 -0.09 -4.52 16
7 C -0.04 -0.58 6.74 -82.89 -0.56 -1.14 16
8 C 0.58 8.79 7.80 -12.34 -0.10 8.70 16
9 O -0.54 -9.44 15.93 5.31 0.08 -9.35 16
10 N -0.68 -10.04 4.80 -54.32 -0.26 -10.30 16
11 C 0.14 2.27 4.12 -67.49 -0.28 2.00 16
12 H 0.10 1.64 7.46 -51.93 -0.39 1.25 16
13 C -0.17 -3.19 7.69 -25.75 -0.20 -3.39 16
14 C 0.18 3.54 4.28 -67.48 -0.29 3.25 16
15 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16
16 N -0.71 -17.36 5.30 -52.98 -0.28 -17.64 16
17 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16
18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16
19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16
20 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16
21 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16
22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16
24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
25 C -0.12 -2.05 0.92 -154.71 -0.14 -2.20 16
26 C -0.10 -1.70 7.15 -26.28 -0.19 -1.88 16
27 C -0.14 -1.97 8.08 -25.75 -0.21 -2.18 16
28 C -0.12 -1.83 7.62 -26.28 -0.20 -2.03 16
29 C 0.17 2.00 10.76 -17.02 -0.18 1.81 16
30 N -0.51 -5.59 9.35 -11.96 -0.11 -5.70 16
31 H 0.08 0.23 5.41 -51.93 -0.28 -0.05 16
32 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16
33 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16
34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16
35 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16
36 H 0.08 0.51 7.51 -51.93 -0.39 0.12 16
37 H 0.17 1.05 5.88 -52.49 -0.31 0.74 16
38 H 0.41 5.67 7.75 -40.82 -0.32 5.36 16
39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16
40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
41 H 0.39 10.00 6.23 -40.82 -0.25 9.74 16
42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16
43 H 0.10 1.81 7.03 -51.93 -0.36 1.45 16
44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
47 H 0.06 0.82 7.58 -51.93 -0.39 0.42 16
48 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
49 H 0.18 1.92 7.63 -52.49 -0.40 1.52 16
LS Contribution 399.83 15.07 6.03 6.03
Total: -1.00 -32.94 399.83 -9.51 -42.44
By element:
Atomic # 1 Polarization: 20.87 SS G_CDS: -7.29 Total: 13.58 kcal
Atomic # 6 Polarization: 2.56 SS G_CDS: -2.65 Total: -0.09 kcal
Atomic # 7 Polarization: -69.24 SS G_CDS: -0.66 Total: -69.90 kcal
Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.35 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -32.94 -9.51 -42.44 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001078629955.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.098 kcal
(2) G-P(sol) polarization free energy of solvation -32.936 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.163 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.656 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds