Wall clock time and date at job start Wed Apr 1 2020 03:12:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46500 * 120.00426 * 2 1
4 4 C 1.38404 * 119.99938 * 179.97438 * 2 1 3
5 5 C 1.39888 * 119.99350 * 352.01485 * 4 2 1
6 6 N 1.31462 * 120.01123 * 179.76747 * 5 4 2
7 7 C 1.33276 * 120.00710 * 0.45782 * 6 5 4
8 8 C 1.47816 * 120.00206 * 179.79366 * 7 6 5
9 9 O 1.21562 * 120.00178 * 179.72463 * 8 7 6
10 10 N 1.34777 * 120.00212 * 359.72425 * 8 7 6
11 11 C 1.46499 * 120.00650 * 179.97438 * 10 8 7
12 12 H 1.09006 * 112.87931 * 23.65829 * 11 10 8
13 13 C 1.53943 * 113.74855 * 252.23393 * 11 10 8
14 14 C 1.53950 * 87.29431 * 270.24613 * 13 11 10
15 15 H 1.09001 * 113.75014 * 89.75223 * 14 13 11
16 16 N 1.46507 * 113.66315 * 220.79882 * 14 13 11
17 17 C 1.36936 * 119.99443 * 251.91138 * 16 14 13
18 18 H 1.07999 * 120.00644 * 0.27414 * 17 16 14
19 19 C 1.38824 * 119.99794 * 180.27686 * 17 16 14
20 20 N 1.31621 * 119.99734 * 359.97438 * 19 17 16
21 21 Si 1.86794 * 119.99896 * 180.02562 * 19 17 16
22 22 H 1.48495 * 109.47407 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47079 * 120.00088 * 21 19 17
24 24 H 1.48498 * 109.46837 * 239.99635 * 21 19 17
25 25 C 1.52906 * 113.66320 * 154.99824 * 11 10 8
26 26 C 1.52909 * 121.13590 * 215.38501 * 25 11 10
27 27 C 1.53957 * 86.78064 * 100.82374 * 26 25 11
28 28 C 1.52909 * 121.14037 * 323.94815 * 25 11 10
29 29 C 1.39409 * 119.99754 * 359.51890 * 7 6 5
30 30 N 1.32046 * 119.98221 * 0.25092 * 29 7 6
31 31 H 1.08992 * 109.47073 * 174.56572 * 1 2 3
32 32 H 1.09000 * 109.47024 * 294.56897 * 1 2 3
33 33 H 1.08999 * 109.46745 * 54.56000 * 1 2 3
34 34 H 1.09001 * 109.46850 * 270.00039 * 3 2 1
35 35 H 1.09002 * 109.47169 * 29.99629 * 3 2 1
36 36 H 1.08995 * 109.47128 * 149.99703 * 3 2 1
37 37 H 1.08001 * 119.99643 * 359.97438 * 5 4 2
38 38 H 0.97007 * 119.99901 * 359.97438 * 10 8 7
39 39 H 1.08998 * 113.57780 * 155.64760 * 13 11 10
40 40 H 1.08994 * 113.58609 * 24.84997 * 13 11 10
41 41 H 0.96995 * 120.00072 * 72.18698 * 16 14 13
42 42 H 0.96998 * 119.99949 * 180.02562 * 20 19 17
43 43 H 1.09001 * 113.66373 * 215.29519 * 26 25 11
44 44 H 1.08997 * 113.66355 * 346.35346 * 26 25 11
45 45 H 1.08993 * 113.58035 * 270.12827 * 27 26 25
46 46 H 1.08996 * 113.65056 * 139.34830 * 27 26 25
47 47 H 1.08998 * 113.65732 * 13.65502 * 28 25 11
48 48 H 1.09003 * 113.65848 * 144.70329 * 28 25 11
49 49 H 1.07996 * 120.00522 * 180.22881 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.1570 -1.1986 0.0005
5 6 1.4676 -2.4041 0.1694
6 7 2.1240 -3.5431 0.1654
7 6 3.4476 -3.5490 0.0096
8 6 4.1861 -4.8295 0.0096
9 8 5.3928 -4.8353 -0.1375
10 7 3.5216 -5.9907 0.1728
11 6 4.2533 -7.2599 0.1724
12 1 5.3030 -7.1440 0.4425
13 6 4.0312 -8.1031 -1.0963
14 6 2.8385 -8.7502 -0.3692
15 1 1.8948 -8.2265 -0.5216
16 7 2.7302 -10.1949 -0.5876
17 6 1.7297 -10.6946 -1.3777
18 1 1.0231 -10.0236 -1.8435
19 6 1.6235 -12.0639 -1.5801
20 7 2.4849 -12.8817 -1.0129
21 14 0.2591 -12.7456 -2.6585
22 1 -0.5696 -11.6268 -3.1748
23 1 0.8538 -13.4888 -3.7984
24 1 -0.5917 -13.6634 -1.8592
25 6 3.5430 -8.3781 0.9360
26 6 4.3330 -9.4173 1.7322
27 6 3.9686 -8.6049 2.9881
28 6 2.7473 -8.0850 2.2084
29 6 4.1350 -2.3480 -0.1592
30 7 3.4749 -1.2044 -0.1597
31 1 -0.3633 -1.0230 -0.0973
32 1 -0.3633 0.4273 0.9346
33 1 -0.3633 0.5959 -0.8373
34 1 2.3793 1.5833 -1.0277
35 1 1.6086 2.0284 0.5138
36 1 3.1500 1.1383 0.5139
37 1 0.3955 -2.3992 0.2997
38 1 2.5587 -5.9861 0.2906
39 1 4.8439 -8.7987 -1.3053
40 1 3.7435 -7.5137 -1.9668
41 1 3.3647 -10.7975 -0.1693
42 1 2.4110 -13.8384 -1.1546
43 1 3.8903 -10.4132 1.7117
44 1 5.3997 -9.4217 1.5083
45 1 4.6939 -7.8284 3.2308
46 1 3.7067 -9.2222 3.8475
47 1 2.5472 -7.0250 2.3647
48 1 1.8589 -8.7064 2.3216
49 1 5.2071 -2.3530 -0.2892
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001078629955.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:12:40
Heat of formation + Delta-G solvation = 69.946813 kcal
Electronic energy + Delta-G solvation = -30016.140854 eV
Core-core repulsion = 25979.931425 eV
Total energy + Delta-G solvation = -4036.209429 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.36586 -41.77656 -39.94062 -37.94383 -36.44556 -35.80038 -35.19052 -33.78078
-32.13756 -31.39684 -29.37948 -27.53928 -26.71321 -26.43714 -25.40157 -25.22837
-24.35718 -23.33757 -22.07754 -21.36529 -19.68276 -19.35872 -19.01589 -18.52537
-17.96904 -17.20996 -16.77247 -16.66879 -16.44230 -16.31563 -15.94549 -15.87433
-15.51186 -15.38356 -15.14931 -14.76628 -14.47210 -14.16669 -13.89467 -13.45573
-13.39931 -13.33772 -13.25655 -13.17548 -12.90615 -12.85832 -12.71839 -12.57486
-12.54277 -12.41232 -12.11215 -11.98453 -11.81787 -11.42153 -11.33298 -11.16538
-11.11371 -10.82666 -10.64081 -10.19253 -9.99038 -8.93352 -8.79970 -7.92200
-5.19407 -0.45905 0.07599 1.48074 1.48618 1.58450 1.68704 1.69509
2.03005 2.57820 2.77963 3.03106 3.23158 3.34526 3.38722 3.46500
3.66699 3.77351 3.87869 3.96228 4.00754 4.01945 4.17263 4.20591
4.31314 4.36586 4.51411 4.57689 4.58707 4.65062 4.74058 4.75580
4.83871 4.91348 4.94065 4.97935 5.01133 5.07393 5.09167 5.12783
5.13943 5.26074 5.50408 5.53111 5.63661 5.65148 5.67572 5.95251
6.26747 6.30202 6.50831 6.77103 7.13957 7.36932 8.14124 8.38464
9.31167
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.013643 B = 0.002402 C = 0.002201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2051.832584 B =11653.417893 C =12720.740323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.592 5.592
3 C 0.090 3.910
4 C 0.370 3.630
5 C 0.001 3.999
6 N -0.386 5.386
7 C -0.073 4.073
8 C 0.585 3.415
9 O -0.571 6.571
10 N -0.680 5.680
11 C 0.160 3.840
12 H 0.095 0.905
13 C -0.171 4.171
14 C 0.168 3.832
15 H 0.075 0.925
16 N -0.720 5.720
17 C -0.238 4.238
18 H 0.075 0.925
19 C -0.076 4.076
20 N -0.968 5.968
21 Si 0.970 3.030
22 H -0.267 1.267
23 H -0.297 1.297
24 H -0.294 1.294
25 C -0.116 4.116
26 C -0.111 4.111
27 C -0.125 4.125
28 C -0.116 4.116
29 C 0.172 3.828
30 N -0.525 5.525
31 H 0.091 0.909
32 H 0.085 0.915
33 H 0.084 0.916
34 H 0.056 0.944
35 H 0.098 0.902
36 H 0.064 0.936
37 H 0.206 0.794
38 H 0.415 0.585
39 H 0.073 0.927
40 H 0.055 0.945
41 H 0.377 0.623
42 H 0.250 0.750
43 H 0.071 0.929
44 H 0.067 0.933
45 H 0.087 0.913
46 H 0.073 0.927
47 H 0.077 0.923
48 H 0.075 0.925
49 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.255 30.428 6.857 31.480
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.302 5.302
3 C -0.052 4.052
4 C 0.127 3.873
5 C -0.174 4.174
6 N -0.101 5.101
7 C -0.211 4.211
8 C 0.372 3.628
9 O -0.451 6.451
10 N -0.329 5.329
11 C 0.054 3.946
12 H 0.113 0.887
13 C -0.213 4.213
14 C 0.058 3.942
15 H 0.093 0.907
16 N -0.357 5.357
17 C -0.370 4.370
18 H 0.093 0.907
19 C -0.268 4.268
20 N -0.619 5.619
21 Si 0.799 3.201
22 H -0.191 1.191
23 H -0.224 1.224
24 H -0.221 1.221
25 C -0.118 4.118
26 C -0.149 4.149
27 C -0.162 4.162
28 C -0.154 4.154
29 C 0.011 3.989
30 N -0.248 5.248
31 H 0.109 0.891
32 H 0.103 0.897
33 H 0.102 0.898
34 H 0.075 0.925
35 H 0.116 0.884
36 H 0.083 0.917
37 H 0.222 0.778
38 H 0.252 0.748
39 H 0.092 0.908
40 H 0.074 0.926
41 H 0.211 0.789
42 H 0.059 0.941
43 H 0.089 0.911
44 H 0.086 0.914
45 H 0.105 0.895
46 H 0.092 0.908
47 H 0.095 0.905
48 H 0.093 0.907
49 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges -3.652 30.560 6.624 31.482
hybrid contribution -0.550 -1.141 -0.746 1.470
sum -4.202 29.419 5.878 30.293
Atomic orbital electron populations
1.22241 0.75233 1.05001 1.04107 1.46635 1.07183 1.02498 1.73855
1.21800 0.97461 0.83585 1.02357 1.19955 0.89649 0.88882 0.88819
1.23794 1.02771 0.85862 1.04988 1.68087 1.07174 1.29909 1.04921
1.21311 0.91390 0.94705 1.13730 1.17759 0.86115 0.83256 0.75704
1.90758 1.14695 1.87478 1.52157 1.45327 1.11911 1.04235 1.71386
1.21237 0.95926 0.81407 0.96005 0.88688 1.24141 1.01347 0.98709
0.97113 1.21649 0.94990 0.84223 0.93379 0.90669 1.42515 1.34128
1.01982 1.57109 1.19706 1.05721 0.90900 1.20707 0.90747 1.25516
1.01690 0.96584 1.03000 1.69816 1.39758 1.02367 1.49960 0.85121
0.78875 0.78148 0.77920 1.19100 1.22422 1.22086 1.23288 0.98205
0.96092 0.94228 1.22440 0.99358 0.97208 0.95892 1.22764 0.97785
0.99340 0.96294 1.22582 0.97158 1.01267 0.94358 1.23505 1.01711
0.85902 0.87774 1.68186 1.07340 1.28906 1.20367 0.89064 0.89653
0.89758 0.92541 0.88379 0.91704 0.77769 0.74792 0.90844 0.92593
0.78915 0.94127 0.91074 0.91383 0.89482 0.90796 0.90464 0.90653
0.80018
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.20 10.56 127.77 1.35 1.55 16
2 N -0.59 -6.02 3.37 -753.50 -2.54 -8.56 16
3 C 0.09 0.71 10.44 127.77 1.33 2.05 16
4 C 0.37 6.19 7.34 133.34 0.98 7.17 16
5 C 0.00 0.01 10.42 85.15 0.89 0.90 16
6 N -0.39 -8.61 9.69 -183.79 -1.78 -10.39 16
7 C -0.07 -1.85 6.74 41.74 0.28 -1.57 16
8 C 0.59 17.59 7.80 86.78 0.68 18.27 16
9 O -0.57 -20.15 15.93 -3.91 -0.06 -20.21 16
10 N -0.68 -19.59 4.80 -444.06 -2.13 -21.72 16
11 C 0.16 5.14 4.12 45.28 0.19 5.32 16
12 H 0.10 3.17 7.46 -2.38 -0.02 3.15 16
13 C -0.17 -6.39 7.69 31.23 0.24 -6.15 16
14 C 0.17 6.68 4.28 45.28 0.19 6.88 16
15 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16
16 N -0.72 -36.12 5.30 -321.54 -1.70 -37.83 16
17 C -0.24 -13.21 9.97 84.04 0.84 -12.38 16
18 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16
19 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16
20 N -0.97 -59.32 13.06 21.66 0.28 -59.04 16
21 Si 0.97 46.42 29.55 68.60 2.03 48.45 16
22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
23 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16
24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16
25 C -0.12 -3.78 0.92 -52.31 -0.05 -3.83 16
26 C -0.11 -3.63 7.15 30.89 0.22 -3.41 16
27 C -0.12 -3.31 8.08 31.23 0.25 -3.05 16
28 C -0.12 -3.30 7.62 30.88 0.24 -3.06 16
29 C 0.17 4.00 10.76 84.94 0.91 4.92 16
30 N -0.52 -11.01 9.35 -191.75 -1.79 -12.80 16
31 H 0.09 0.11 5.41 -2.39 -0.01 0.10 16
32 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16
33 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16
34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16
35 H 0.10 0.24 8.07 -2.39 -0.02 0.22 16
36 H 0.06 0.73 7.51 -2.39 -0.02 0.71 16
37 H 0.21 1.73 5.88 -2.91 -0.02 1.72 16
38 H 0.41 11.10 7.75 -92.70 -0.72 10.38 16
39 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16
40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
41 H 0.38 20.23 6.23 -92.71 -0.58 19.65 16
42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16
43 H 0.07 2.74 7.03 -2.39 -0.02 2.72 16
44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16
45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16
46 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
47 H 0.08 1.94 7.58 -2.39 -0.02 1.92 16
48 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
49 H 0.18 3.97 7.63 -2.91 -0.02 3.95 16
Total: -1.00 -72.37 399.83 1.00 -71.37
By element:
Atomic # 1 Polarization: 41.33 SS G_CDS: -0.31 Total: 41.03 kcal
Atomic # 6 Polarization: 0.70 SS G_CDS: 9.01 Total: 9.71 kcal
Atomic # 7 Polarization: -140.67 SS G_CDS: -9.67 Total: -150.34 kcal
Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal
Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal
Total: -72.37 1.00 -71.37 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001078629955.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.318 kcal
(2) G-P(sol) polarization free energy of solvation -72.370 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.371 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.947 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds