Wall clock time and date at job start Wed Apr 1 2020 03:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99550 * 2 1 4 4 C 1.38399 * 120.00298 * 179.97438 * 2 1 3 5 5 C 1.39891 * 120.00179 * 352.00911 * 4 2 1 6 6 N 1.31442 * 120.01834 * 180.02562 * 5 4 2 7 7 C 1.33289 * 120.00964 * 359.97438 * 6 5 4 8 8 C 1.47812 * 120.00192 * 180.02562 * 7 6 5 9 9 O 1.21565 * 120.00050 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00612 * 0.02562 * 8 7 6 11 11 C 1.46490 * 120.00321 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.95161 * 336.40668 * 11 10 8 13 13 C 1.53955 * 113.66277 * 107.81228 * 11 10 8 14 14 C 1.53955 * 87.29446 * 139.20170 * 13 11 10 15 15 H 1.09003 * 113.74507 * 89.75173 * 14 13 11 16 16 N 1.46501 * 113.66400 * 220.79278 * 14 13 11 17 17 C 1.36933 * 120.00457 * 252.19392 * 16 14 13 18 18 H 1.08002 * 119.99741 * 359.97438 * 17 16 14 19 19 C 1.38806 * 120.00300 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00155 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00219 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47584 * 89.99650 * 21 19 17 23 23 H 1.48503 * 109.47365 * 210.00225 * 21 19 17 24 24 H 1.48504 * 109.46755 * 329.99681 * 21 19 17 25 25 C 1.52904 * 86.78361 * 335.26777 * 14 13 11 26 26 C 1.52912 * 121.13624 * 150.61639 * 25 14 13 27 27 C 1.53950 * 86.78285 * 100.82159 * 26 25 14 28 28 C 1.53068 * 121.06958 * 259.15720 * 25 14 13 29 29 C 1.39409 * 119.99244 * 0.27906 * 7 6 5 30 30 N 1.32054 * 119.98259 * 359.42723 * 29 7 6 31 31 H 1.09005 * 109.46443 * 174.56008 * 1 2 3 32 32 H 1.08995 * 109.47357 * 294.55714 * 1 2 3 33 33 H 1.08998 * 109.46961 * 54.56471 * 1 2 3 34 34 H 1.08994 * 109.47223 * 270.00177 * 3 2 1 35 35 H 1.09004 * 109.46819 * 30.00354 * 3 2 1 36 36 H 1.08999 * 109.47207 * 149.99614 * 3 2 1 37 37 H 1.08003 * 119.98439 * 359.97438 * 5 4 2 38 38 H 0.97009 * 119.99289 * 359.97438 * 10 8 7 39 39 H 1.08998 * 113.57984 * 24.60028 * 13 11 10 40 40 H 1.08998 * 113.58120 * 253.80360 * 13 11 10 41 41 H 0.97000 * 119.99832 * 72.18926 * 16 14 13 42 42 H 0.96998 * 120.00291 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.66064 * 346.35147 * 26 25 14 44 44 H 1.09001 * 113.66187 * 215.29494 * 26 25 14 45 45 H 1.08993 * 113.58101 * 139.33533 * 27 26 25 46 46 H 1.09005 * 113.57822 * 270.05316 * 27 26 25 47 47 H 1.08998 * 113.66796 * 144.67709 * 28 25 14 48 48 H 1.09007 * 113.70823 * 13.57605 * 28 25 14 49 49 H 1.07993 * 120.00508 * 179.72834 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1571 -1.1985 0.0005 5 6 1.4679 -2.4041 0.1695 6 7 2.1249 -3.5426 0.1706 7 6 3.4481 -3.5488 0.0101 8 6 4.1867 -4.8291 0.0108 9 8 5.3934 -4.8348 -0.1360 10 7 3.5222 -5.9905 0.1731 11 6 4.2542 -7.2594 0.1732 12 1 5.2073 -7.2004 -0.3525 13 6 4.3546 -7.9148 1.5626 14 6 4.0941 -9.2624 0.8653 15 1 5.0012 -9.7676 0.5338 16 7 3.1902 -10.1439 1.6084 17 6 3.6820 -11.2571 2.2360 18 1 4.7363 -11.4855 2.1829 19 6 2.8255 -12.0926 2.9396 20 7 1.5406 -11.8146 3.0040 21 14 3.4963 -13.6117 3.7952 22 1 3.8949 -13.2631 5.1825 23 1 2.4484 -14.6633 3.8306 24 1 4.6791 -14.1164 3.0524 25 6 3.4007 -8.4602 -0.2364 26 6 3.3784 -8.9580 -1.6821 27 6 1.9408 -9.4338 -1.4046 28 6 1.8746 -8.3624 -0.3011 29 6 4.1360 -2.3472 -0.1530 30 7 3.4749 -1.2041 -0.1598 31 1 -0.3632 -1.0231 -0.0974 32 1 -0.3634 0.4271 0.9347 33 1 -0.3633 0.5958 -0.8373 34 1 2.3791 1.5835 -1.0276 35 1 1.6083 2.0284 0.5139 36 1 3.1498 1.1386 0.5139 37 1 0.3958 -2.3993 0.2999 38 1 2.5592 -5.9860 0.2898 39 1 3.5585 -7.6155 2.2444 40 1 5.3458 -7.8396 2.0096 41 1 2.2433 -9.9389 1.6559 42 1 0.9421 -12.3982 3.4960 43 1 4.0785 -9.7707 -1.8757 44 1 3.4398 -8.1590 -2.4209 45 1 1.2540 -9.2515 -2.2311 46 1 1.8848 -10.4543 -1.0255 47 1 1.5125 -7.3957 -0.6511 48 1 1.3748 -8.7000 0.6070 49 1 5.2086 -2.3517 -0.2786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078629956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:44 Heat of formation + Delta-G solvation = 91.097881 kcal Electronic energy + Delta-G solvation = -29986.057489 eV Core-core repulsion = 25950.765239 eV Total energy + Delta-G solvation = -4035.292250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48535 -40.42520 -38.78838 -37.28725 -34.84853 -34.52251 -33.93428 -32.37834 -31.14827 -29.76708 -28.97751 -26.74483 -25.42697 -24.72047 -24.37867 -24.07902 -23.17730 -21.95608 -20.44554 -20.38299 -18.49650 -18.09897 -17.85582 -17.51423 -16.69069 -16.11402 -15.93891 -15.59879 -15.14464 -14.96110 -14.94494 -14.82462 -14.46721 -14.16080 -13.92028 -13.55302 -13.10002 -12.96918 -12.83211 -12.71544 -12.51894 -12.43170 -12.00922 -11.82196 -11.76734 -11.59097 -11.43920 -11.18081 -10.87642 -10.77185 -10.66700 -10.46430 -10.21960 -10.15019 -10.00409 -9.81244 -9.70670 -9.43876 -9.25964 -8.82234 -8.59770 -8.14704 -6.94188 -5.77540 -3.05558 0.40392 0.87224 2.25409 2.75501 3.25730 3.44196 3.49959 3.50945 3.69252 3.86716 3.96630 4.07458 4.55980 4.59436 4.68859 4.76687 4.78545 4.87607 4.94591 5.02057 5.08366 5.10166 5.14147 5.27936 5.31288 5.32887 5.35327 5.49351 5.74020 5.79990 5.96354 5.98949 6.05555 6.06701 6.13266 6.17077 6.27779 6.39008 6.46125 6.58329 6.59528 6.65413 6.68914 6.92640 6.99302 7.05333 7.13385 7.47054 7.71799 7.78137 8.33187 8.41428 9.53032 10.10268 10.45357 11.44771 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.002180 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.732610 B =12838.931785 C =13075.664948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.601 5.601 3 C 0.095 3.905 4 C 0.370 3.630 5 C -0.007 4.007 6 N -0.373 5.373 7 C -0.045 4.045 8 C 0.580 3.420 9 O -0.544 6.544 10 N -0.690 5.690 11 C 0.128 3.872 12 H 0.112 0.888 13 C -0.173 4.173 14 C 0.193 3.807 15 H 0.082 0.918 16 N -0.706 5.706 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.116 4.116 29 C 0.170 3.830 30 N -0.508 5.508 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.172 0.828 38 H 0.408 0.592 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 25.339 -9.219 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.313 5.313 3 C -0.047 4.047 4 C 0.130 3.870 5 C -0.179 4.179 6 N -0.089 5.089 7 C -0.186 4.186 8 C 0.364 3.636 9 O -0.422 6.422 10 N -0.340 5.340 11 C 0.024 3.976 12 H 0.129 0.871 13 C -0.216 4.216 14 C 0.080 3.920 15 H 0.100 0.900 16 N -0.344 5.344 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.207 1.207 25 C -0.121 4.121 26 C -0.163 4.163 27 C -0.167 4.167 28 C -0.154 4.154 29 C 0.008 3.992 30 N -0.231 5.231 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.189 0.811 38 H 0.245 0.755 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.223 0.777 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.389 25.260 -9.245 27.005 hybrid contribution -0.586 -0.523 0.645 1.016 sum -2.974 24.738 -8.599 26.358 Atomic orbital electron populations 1.21922 0.77538 1.03878 1.02388 1.46205 1.05709 1.03039 1.76329 1.21661 0.97518 0.83605 1.01951 1.19634 0.89922 0.87585 0.89890 1.23234 1.01438 0.86715 1.06522 1.68140 1.07723 1.28657 1.04346 1.21794 0.90773 0.95904 1.10097 1.17512 0.86432 0.82817 0.76822 1.90777 1.13301 1.86954 1.51121 1.45819 1.11885 1.05269 1.70993 1.22366 0.96124 0.80174 0.98973 0.87062 1.24280 1.01706 0.99759 0.95833 1.21061 0.93318 0.88424 0.89247 0.90016 1.42350 1.06967 1.25959 1.59140 1.19302 0.93273 1.00022 1.24611 0.91062 1.24738 0.95485 0.99369 1.01267 1.69654 1.02244 1.39474 1.46660 0.86200 0.77614 0.82820 0.79613 1.21770 1.21852 1.20744 1.23638 0.96020 0.96069 0.96418 1.22697 0.97786 1.00098 0.95736 1.22723 0.96094 1.00083 0.97809 1.22457 0.94421 0.98445 1.00079 1.23516 1.01518 0.85929 0.88221 1.68143 1.06354 1.29488 1.19075 0.89861 0.91581 0.91320 0.92764 0.91240 0.90291 0.81089 0.75490 0.90149 0.92046 0.77748 0.93517 0.91482 0.91057 0.92619 0.89165 0.90999 0.90314 0.80098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 10.56 59.85 0.63 0.92 16 2 N -0.60 -4.07 3.37 -189.51 -0.64 -4.71 16 3 C 0.10 0.52 10.44 59.85 0.62 1.14 16 4 C 0.37 3.57 7.34 -155.01 -1.14 2.43 16 5 C -0.01 -0.06 10.42 -17.10 -0.18 -0.24 16 6 N -0.37 -4.53 9.69 -9.45 -0.09 -4.62 16 7 C -0.05 -0.60 6.74 -82.88 -0.56 -1.15 16 8 C 0.58 8.87 7.80 -12.34 -0.10 8.78 16 9 O -0.54 -9.55 15.93 5.31 0.08 -9.47 16 10 N -0.69 -10.26 5.24 -54.32 -0.28 -10.54 16 11 C 0.13 2.06 4.12 -67.48 -0.28 1.78 16 12 H 0.11 1.83 7.46 -51.93 -0.39 1.45 16 13 C -0.17 -3.15 7.68 -25.74 -0.20 -3.35 16 14 C 0.19 3.78 4.36 -67.48 -0.29 3.49 16 15 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 16 N -0.71 -17.06 5.32 -52.99 -0.28 -17.35 16 17 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 C -0.12 -1.94 1.07 -154.63 -0.16 -2.11 16 26 C -0.13 -1.89 7.84 -26.28 -0.21 -2.10 16 27 C -0.13 -2.04 8.08 -25.75 -0.21 -2.25 16 28 C -0.12 -1.84 6.79 -26.20 -0.18 -2.02 16 29 C 0.17 2.02 10.76 -17.02 -0.18 1.84 16 30 N -0.51 -5.68 9.35 -11.96 -0.11 -5.79 16 31 H 0.08 0.23 5.42 -51.93 -0.28 -0.05 16 32 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 36 H 0.08 0.53 7.51 -51.93 -0.39 0.14 16 37 H 0.17 1.08 5.88 -52.48 -0.31 0.77 16 38 H 0.41 5.75 6.38 -40.82 -0.26 5.49 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.39 9.85 5.91 -40.82 -0.24 9.61 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 47 H 0.07 1.00 7.03 -51.93 -0.37 0.63 16 48 H 0.08 1.43 6.42 -51.92 -0.33 1.10 16 49 H 0.18 1.96 7.63 -52.49 -0.40 1.56 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -32.53 397.55 -9.46 -41.99 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.16 Total: 14.13 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.67 Total: 0.00 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -0.68 Total: -69.88 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.53 -9.46 -41.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078629956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.085 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds