Wall clock time and date at job start Wed Apr 1 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46496 * 119.99982 * 2 1 4 4 C 1.38404 * 119.99997 * 179.97438 * 2 1 3 5 5 C 1.39887 * 119.99903 * 4.98089 * 4 2 1 6 6 N 1.31454 * 120.01810 * 180.02562 * 5 4 2 7 7 C 1.33286 * 120.00452 * 0.02562 * 6 5 4 8 8 C 1.47816 * 119.99900 * 180.02562 * 7 6 5 9 9 O 1.21564 * 119.99965 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00086 * 359.97105 * 8 7 6 11 11 C 1.46506 * 119.99622 * 179.97438 * 10 8 7 12 12 H 1.08995 * 112.88651 * 333.16555 * 11 10 8 13 13 C 1.53954 * 113.65717 * 104.50954 * 11 10 8 14 14 C 1.53953 * 87.29460 * 139.20403 * 13 11 10 15 15 H 1.08998 * 113.66533 * 220.79438 * 14 13 11 16 16 N 1.46502 * 113.66252 * 89.82725 * 14 13 11 17 17 C 1.36930 * 119.99875 * 104.50370 * 16 14 13 18 18 H 1.08003 * 120.00090 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00332 * 179.97438 * 17 16 14 20 20 N 1.31627 * 119.99578 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00545 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46946 * 90.00305 * 21 19 17 23 23 H 1.48497 * 109.47704 * 210.00285 * 21 19 17 24 24 H 1.48500 * 109.47172 * 330.00530 * 21 19 17 25 25 C 1.52904 * 113.65905 * 201.69065 * 11 10 8 26 26 C 1.52911 * 121.14175 * 94.91386 * 25 11 10 27 27 C 1.53943 * 86.78699 * 209.37683 * 26 25 11 28 28 C 1.52912 * 121.14073 * 346.34977 * 25 11 10 29 29 C 1.39401 * 119.99753 * 359.97438 * 7 6 5 30 30 N 1.32054 * 119.98571 * 0.02562 * 29 7 6 31 31 H 1.09005 * 109.47136 * 270.00011 * 1 2 3 32 32 H 1.08996 * 109.47396 * 29.99975 * 1 2 3 33 33 H 1.09006 * 109.47317 * 150.00393 * 1 2 3 34 34 H 1.08997 * 109.47278 * 269.99891 * 3 2 1 35 35 H 1.09001 * 109.47314 * 30.00330 * 3 2 1 36 36 H 1.09004 * 109.47015 * 149.99872 * 3 2 1 37 37 H 1.08005 * 119.99383 * 0.02562 * 5 4 2 38 38 H 0.96998 * 120.00115 * 0.02562 * 10 8 7 39 39 H 1.08998 * 113.58034 * 253.80426 * 13 11 10 40 40 H 1.09000 * 113.58148 * 24.52495 * 13 11 10 41 41 H 0.97001 * 120.00008 * 284.50946 * 16 14 13 42 42 H 0.97000 * 119.99990 * 179.97438 * 20 19 17 43 43 H 1.09006 * 113.66145 * 323.84732 * 26 25 11 44 44 H 1.09001 * 113.66540 * 94.89817 * 26 25 11 45 45 H 1.09001 * 113.57963 * 270.12922 * 27 26 25 46 46 H 1.09000 * 113.65443 * 139.34649 * 27 26 25 47 47 H 1.09000 * 113.65997 * 265.09388 * 28 25 11 48 48 H 1.09000 * 113.66480 * 36.15350 * 28 25 11 49 49 H 1.08002 * 120.00692 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4078 -0.1041 6 7 2.1183 -3.5465 -0.1031 7 6 3.4473 -3.5492 -0.0019 8 6 4.1859 -4.8297 -0.0014 9 8 5.3980 -4.8321 0.0905 10 7 3.5153 -5.9944 -0.1027 11 6 4.2475 -7.2634 -0.1027 12 1 5.2665 -7.1649 -0.4766 13 6 4.1487 -8.0336 1.2266 14 6 4.0008 -9.3164 0.3883 15 1 3.2591 -10.0122 0.7804 16 7 5.2770 -9.9625 0.0719 17 6 5.6534 -11.0978 0.7385 18 1 5.0092 -11.5172 1.4973 19 6 6.8624 -11.7104 0.4385 20 7 7.6472 -11.1995 -0.4865 21 14 7.3756 -13.2595 1.3473 22 1 6.8746 -14.4512 0.6162 23 1 8.8571 -13.3168 1.4308 24 1 6.8028 -13.2424 2.7173 25 6 3.4700 -8.4203 -0.7313 26 6 3.6610 -8.7950 -2.2015 27 6 2.2014 -9.2837 -2.1768 28 6 1.9707 -8.3068 -1.0095 29 6 4.1408 -2.3445 0.1024 30 7 3.4807 -1.2007 0.1014 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8901 -0.5138 34 1 2.3791 1.5834 -1.0276 35 1 1.6084 2.0284 0.5139 36 1 3.1499 1.1383 0.5139 37 1 0.3845 -2.4059 -0.1857 38 1 2.5482 -5.9925 -0.1763 39 1 5.0640 -8.0023 1.8178 40 1 3.2608 -7.7869 1.8087 41 1 5.8554 -9.5860 -0.6097 42 1 8.4922 -11.6273 -0.6960 43 1 3.8241 -7.9372 -2.8539 44 1 4.3869 -9.5928 -2.3589 45 1 2.0971 -10.3316 -1.8955 46 1 1.6398 -9.0294 -3.0757 47 1 1.3463 -8.7146 -0.2146 48 1 1.6587 -7.3118 -1.3269 49 1 5.2178 -2.3465 0.1840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078629958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:50 Heat of formation + Delta-G solvation = 90.695689 kcal Electronic energy + Delta-G solvation = -29976.234198 eV Core-core repulsion = 25940.924508 eV Total energy + Delta-G solvation = -4035.309690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46797 -40.42686 -38.74230 -37.28099 -34.99460 -34.56413 -33.84696 -32.28712 -31.13143 -29.54619 -28.97508 -26.74334 -25.46442 -24.69449 -24.33408 -24.11722 -23.18691 -22.21934 -20.53011 -20.27692 -18.48736 -18.10713 -17.79552 -17.24663 -16.88035 -16.11501 -15.76350 -15.56962 -15.11708 -14.96186 -14.94394 -14.88916 -14.47764 -14.00665 -13.86643 -13.54816 -13.14262 -12.99821 -12.89201 -12.60755 -12.54562 -12.47910 -12.09012 -11.87737 -11.76742 -11.59835 -11.55250 -11.30925 -10.87164 -10.79294 -10.67909 -10.43819 -10.16137 -10.13278 -9.96755 -9.74016 -9.58259 -9.48582 -9.24117 -8.81899 -8.55259 -8.14155 -6.95139 -5.75095 -3.04504 0.42872 0.87513 2.25074 2.80832 3.30539 3.45725 3.50976 3.52902 3.72583 3.90433 3.96019 4.08293 4.52900 4.55697 4.67465 4.73327 4.81954 4.84112 4.94177 4.99215 5.05017 5.07678 5.10447 5.24737 5.28343 5.36614 5.39827 5.50916 5.72087 5.83704 5.88507 5.98016 6.03778 6.07060 6.11841 6.17583 6.19095 6.30805 6.49957 6.57890 6.62850 6.73294 6.78765 6.84975 6.94271 7.05946 7.15565 7.48226 7.73292 7.82428 8.40916 8.43183 9.54204 10.10782 10.45526 11.46968 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002188 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.960104 B =12791.834192 C =13545.964144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.601 5.601 3 C 0.092 3.908 4 C 0.369 3.631 5 C -0.008 4.008 6 N -0.375 5.375 7 C -0.043 4.043 8 C 0.577 3.423 9 O -0.535 6.535 10 N -0.695 5.695 11 C 0.138 3.862 12 H 0.114 0.886 13 C -0.181 4.181 14 C 0.197 3.803 15 H 0.067 0.933 16 N -0.701 5.701 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.115 4.115 29 C 0.170 3.830 30 N -0.508 5.508 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.171 0.829 38 H 0.404 0.596 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.813 23.806 -1.323 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.313 5.313 3 C -0.051 4.051 4 C 0.129 3.871 5 C -0.180 4.180 6 N -0.091 5.091 7 C -0.184 4.184 8 C 0.361 3.639 9 O -0.412 6.412 10 N -0.345 5.345 11 C 0.034 3.966 12 H 0.132 0.868 13 C -0.224 4.224 14 C 0.084 3.916 15 H 0.085 0.915 16 N -0.339 5.339 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.124 4.124 26 C -0.163 4.163 27 C -0.171 4.171 28 C -0.153 4.153 29 C 0.009 3.991 30 N -0.230 5.230 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.187 0.813 38 H 0.241 0.759 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.222 0.778 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.930 23.746 -1.157 29.778 hybrid contribution 0.003 -0.429 0.238 0.491 sum -17.928 23.317 -0.919 29.427 Atomic orbital electron populations 1.21873 0.77621 1.03708 1.02308 1.46197 1.05667 1.03074 1.76352 1.21713 0.97949 0.83543 1.01886 1.19621 0.89920 0.87559 0.90025 1.23175 1.01300 0.86649 1.06906 1.68124 1.07876 1.28786 1.04268 1.21832 0.90521 0.95947 1.10092 1.17533 0.86589 0.82777 0.77033 1.90826 1.12940 1.86961 1.50446 1.45899 1.11015 1.05334 1.72253 1.22474 0.96696 0.79406 0.98040 0.86792 1.24289 1.01674 0.99676 0.96724 1.20630 0.89512 0.90599 0.90873 0.91536 1.42106 1.17351 1.29115 1.45326 1.19240 1.01783 1.01151 1.15123 0.91009 1.24763 0.97300 0.99441 0.99245 1.69670 1.12466 1.41346 1.34190 0.86178 0.77573 0.83171 0.79166 1.21750 1.21800 1.20741 1.23546 0.95458 0.97068 0.96287 1.22636 0.97195 1.01152 0.95341 1.22736 0.97218 0.99452 0.97649 1.22538 0.94750 0.99342 0.98701 1.23544 1.01756 0.85901 0.87923 1.68125 1.06220 1.29608 1.19084 0.92127 0.90321 0.90547 0.92814 0.91287 0.89838 0.81259 0.75924 0.90836 0.91253 0.77829 0.93428 0.91061 0.89901 0.90074 0.92303 0.91400 0.90532 0.80008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.27 10.28 59.84 0.62 0.88 16 2 N -0.60 -3.97 3.37 -189.51 -0.64 -4.61 16 3 C 0.09 0.49 10.50 59.84 0.63 1.12 16 4 C 0.37 3.54 7.37 -155.01 -1.14 2.39 16 5 C -0.01 -0.07 10.42 -17.10 -0.18 -0.25 16 6 N -0.37 -4.43 9.69 -9.44 -0.09 -4.52 16 7 C -0.04 -0.58 6.74 -82.89 -0.56 -1.14 16 8 C 0.58 9.35 7.80 -12.34 -0.10 9.25 16 9 O -0.54 -10.43 15.97 5.31 0.08 -10.35 16 10 N -0.70 -10.55 5.28 -54.32 -0.29 -10.84 16 11 C 0.14 2.42 4.01 -67.48 -0.27 2.15 16 12 H 0.11 2.36 7.54 -51.93 -0.39 1.97 16 13 C -0.18 -3.35 7.68 -25.75 -0.20 -3.55 16 14 C 0.20 3.92 4.35 -67.48 -0.29 3.62 16 15 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 16 N -0.70 -17.40 4.91 -52.99 -0.26 -17.67 16 17 C -0.24 -6.67 9.98 -15.06 -0.15 -6.82 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.12 -1.99 0.91 -154.71 -0.14 -2.13 16 26 C -0.13 -2.07 7.60 -26.29 -0.20 -2.27 16 27 C -0.13 -1.86 8.08 -25.75 -0.21 -2.07 16 28 C -0.12 -1.53 7.16 -26.28 -0.19 -1.72 16 29 C 0.17 2.12 10.76 -17.02 -0.18 1.93 16 30 N -0.51 -5.80 9.22 -11.96 -0.11 -5.91 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.11 8.07 -51.93 -0.42 -0.31 16 33 H 0.08 0.17 5.98 -51.93 -0.31 -0.14 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 36 H 0.08 0.57 7.30 -51.93 -0.38 0.20 16 37 H 0.17 0.98 6.03 -52.48 -0.32 0.66 16 38 H 0.40 5.37 6.26 -40.82 -0.26 5.11 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.39 10.31 7.48 -40.82 -0.31 10.01 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.61 7.51 -51.93 -0.39 1.22 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.08 0.91 6.96 -51.93 -0.36 0.54 16 49 H 0.18 2.13 7.63 -52.49 -0.40 1.73 16 LS Contribution 399.75 15.07 6.02 6.02 Total: -1.00 -33.37 399.75 -9.54 -42.90 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -7.30 Total: 13.91 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.66 Total: 0.98 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -0.66 Total: -70.93 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.37 -9.54 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078629958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.599 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds