Wall clock time and date at job start Wed Apr 1 2020 03:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46496 * 119.99982 * 2 1 4 4 C 1.38404 * 119.99997 * 179.97438 * 2 1 3 5 5 C 1.39887 * 119.99903 * 4.98089 * 4 2 1 6 6 N 1.31454 * 120.01810 * 180.02562 * 5 4 2 7 7 C 1.33286 * 120.00452 * 0.02562 * 6 5 4 8 8 C 1.47816 * 119.99900 * 180.02562 * 7 6 5 9 9 O 1.21564 * 119.99965 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00086 * 359.97105 * 8 7 6 11 11 C 1.46506 * 119.99622 * 179.97438 * 10 8 7 12 12 H 1.08995 * 112.88651 * 333.16555 * 11 10 8 13 13 C 1.53954 * 113.65717 * 104.50954 * 11 10 8 14 14 C 1.53953 * 87.29460 * 139.20403 * 13 11 10 15 15 H 1.08998 * 113.66533 * 220.79438 * 14 13 11 16 16 N 1.46502 * 113.66252 * 89.82725 * 14 13 11 17 17 C 1.36930 * 119.99875 * 104.50370 * 16 14 13 18 18 H 1.08003 * 120.00090 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00332 * 179.97438 * 17 16 14 20 20 N 1.31627 * 119.99578 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00545 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46946 * 90.00305 * 21 19 17 23 23 H 1.48497 * 109.47704 * 210.00285 * 21 19 17 24 24 H 1.48500 * 109.47172 * 330.00530 * 21 19 17 25 25 C 1.52904 * 113.65905 * 201.69065 * 11 10 8 26 26 C 1.52911 * 121.14175 * 94.91386 * 25 11 10 27 27 C 1.53943 * 86.78699 * 209.37683 * 26 25 11 28 28 C 1.52912 * 121.14073 * 346.34977 * 25 11 10 29 29 C 1.39401 * 119.99753 * 359.97438 * 7 6 5 30 30 N 1.32054 * 119.98571 * 0.02562 * 29 7 6 31 31 H 1.09005 * 109.47136 * 270.00011 * 1 2 3 32 32 H 1.08996 * 109.47396 * 29.99975 * 1 2 3 33 33 H 1.09006 * 109.47317 * 150.00393 * 1 2 3 34 34 H 1.08997 * 109.47278 * 269.99891 * 3 2 1 35 35 H 1.09001 * 109.47314 * 30.00330 * 3 2 1 36 36 H 1.09004 * 109.47015 * 149.99872 * 3 2 1 37 37 H 1.08005 * 119.99383 * 0.02562 * 5 4 2 38 38 H 0.96998 * 120.00115 * 0.02562 * 10 8 7 39 39 H 1.08998 * 113.58034 * 253.80426 * 13 11 10 40 40 H 1.09000 * 113.58148 * 24.52495 * 13 11 10 41 41 H 0.97001 * 120.00008 * 284.50946 * 16 14 13 42 42 H 0.97000 * 119.99990 * 179.97438 * 20 19 17 43 43 H 1.09006 * 113.66145 * 323.84732 * 26 25 11 44 44 H 1.09001 * 113.66540 * 94.89817 * 26 25 11 45 45 H 1.09001 * 113.57963 * 270.12922 * 27 26 25 46 46 H 1.09000 * 113.65443 * 139.34649 * 27 26 25 47 47 H 1.09000 * 113.65997 * 265.09388 * 28 25 11 48 48 H 1.09000 * 113.66480 * 36.15350 * 28 25 11 49 49 H 1.08002 * 120.00692 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4078 -0.1041 6 7 2.1183 -3.5465 -0.1031 7 6 3.4473 -3.5492 -0.0019 8 6 4.1859 -4.8297 -0.0014 9 8 5.3980 -4.8321 0.0905 10 7 3.5153 -5.9944 -0.1027 11 6 4.2475 -7.2634 -0.1027 12 1 5.2665 -7.1649 -0.4766 13 6 4.1487 -8.0336 1.2266 14 6 4.0008 -9.3164 0.3883 15 1 3.2591 -10.0122 0.7804 16 7 5.2770 -9.9625 0.0719 17 6 5.6534 -11.0978 0.7385 18 1 5.0092 -11.5172 1.4973 19 6 6.8624 -11.7104 0.4385 20 7 7.6472 -11.1995 -0.4865 21 14 7.3756 -13.2595 1.3473 22 1 6.8746 -14.4512 0.6162 23 1 8.8571 -13.3168 1.4308 24 1 6.8028 -13.2424 2.7173 25 6 3.4700 -8.4203 -0.7313 26 6 3.6610 -8.7950 -2.2015 27 6 2.2014 -9.2837 -2.1768 28 6 1.9707 -8.3068 -1.0095 29 6 4.1408 -2.3445 0.1024 30 7 3.4807 -1.2007 0.1014 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8901 -0.5138 34 1 2.3791 1.5834 -1.0276 35 1 1.6084 2.0284 0.5139 36 1 3.1499 1.1383 0.5139 37 1 0.3845 -2.4059 -0.1857 38 1 2.5482 -5.9925 -0.1763 39 1 5.0640 -8.0023 1.8178 40 1 3.2608 -7.7869 1.8087 41 1 5.8554 -9.5860 -0.6097 42 1 8.4922 -11.6273 -0.6960 43 1 3.8241 -7.9372 -2.8539 44 1 4.3869 -9.5928 -2.3589 45 1 2.0971 -10.3316 -1.8955 46 1 1.6398 -9.0294 -3.0757 47 1 1.3463 -8.7146 -0.2146 48 1 1.6587 -7.3118 -1.3269 49 1 5.2178 -2.3465 0.1840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078629958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:49 Heat of formation + Delta-G solvation = 67.635036 kcal Electronic energy + Delta-G solvation = -29977.234183 eV Core-core repulsion = 25940.924508 eV Total energy + Delta-G solvation = -4036.309675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.34930 -41.75638 -39.96256 -37.94224 -36.48811 -35.75672 -35.15172 -33.93826 -32.09795 -31.34111 -29.35769 -27.57831 -26.74938 -26.22787 -25.52007 -25.22178 -24.49379 -23.33133 -21.72844 -21.66739 -19.67497 -19.34973 -18.84396 -18.52773 -18.16849 -17.13690 -16.77871 -16.66365 -16.52236 -16.23751 -15.95694 -15.84805 -15.57528 -15.39439 -14.97697 -14.80214 -14.43603 -14.26212 -13.86708 -13.53006 -13.42500 -13.32222 -13.26764 -13.10795 -12.91531 -12.80980 -12.67075 -12.61679 -12.51318 -12.42969 -12.17701 -12.00341 -11.78216 -11.43360 -11.28959 -11.15351 -11.07346 -10.90169 -10.71183 -10.18863 -9.90385 -9.00262 -8.79435 -7.93477 -5.22683 -0.45853 0.07269 1.47263 1.49484 1.57794 1.69850 1.70994 2.12670 2.55591 2.78030 3.04635 3.21693 3.36419 3.37608 3.42168 3.56585 3.78124 3.88851 3.97535 4.01489 4.04100 4.19795 4.22482 4.25303 4.37452 4.49755 4.56843 4.57907 4.65631 4.77055 4.79725 4.86196 4.88936 4.92605 4.94821 5.05786 5.10128 5.13097 5.14992 5.26198 5.32166 5.44527 5.54294 5.61512 5.65129 5.73050 5.93976 6.26415 6.28456 6.54241 6.77999 7.20027 7.33461 8.09180 8.32172 9.29842 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002188 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.960104 B =12791.834192 C =13545.964144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.086 3.914 4 C 0.368 3.632 5 C 0.006 3.994 6 N -0.381 5.381 7 C -0.072 4.072 8 C 0.575 3.425 9 O -0.582 6.582 10 N -0.682 5.682 11 C 0.145 3.855 12 H 0.072 0.928 13 C -0.171 4.171 14 C 0.182 3.818 15 H 0.074 0.926 16 N -0.715 5.715 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.975 3.025 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.269 1.269 25 C -0.111 4.111 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.096 4.096 29 C 0.168 3.832 30 N -0.526 5.526 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.211 0.789 38 H 0.417 0.583 39 H 0.038 0.962 40 H 0.099 0.901 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.574 25.649 -1.017 34.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.300 5.300 3 C -0.056 4.056 4 C 0.125 3.875 5 C -0.169 4.169 6 N -0.096 5.096 7 C -0.210 4.210 8 C 0.361 3.639 9 O -0.461 6.461 10 N -0.332 5.332 11 C 0.040 3.960 12 H 0.091 0.909 13 C -0.213 4.213 14 C 0.071 3.929 15 H 0.092 0.908 16 N -0.352 5.352 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.804 3.196 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.193 1.193 25 C -0.113 4.113 26 C -0.172 4.172 27 C -0.160 4.160 28 C -0.134 4.134 29 C 0.007 3.993 30 N -0.250 5.250 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.228 0.772 38 H 0.256 0.744 39 H 0.057 0.943 40 H 0.118 0.882 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.119 0.881 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -22.783 25.620 -0.826 34.295 hybrid contribution 1.294 -0.709 0.148 1.483 sum -21.489 24.911 -0.679 32.906 Atomic orbital electron populations 1.22235 0.75021 1.05548 1.03688 1.46645 1.07279 1.02396 1.73706 1.21848 0.97746 0.83631 1.02397 1.20002 0.89535 0.89094 0.88886 1.23829 1.02834 0.85587 1.04688 1.68066 1.06816 1.30045 1.04683 1.21252 0.91386 0.94365 1.13983 1.17973 0.86231 0.83865 0.75821 1.90795 1.15074 1.87723 1.52551 1.45661 1.11355 1.04207 1.72020 1.22031 0.95460 0.81055 0.97485 0.90942 1.24170 1.01296 0.99036 0.96806 1.20862 0.87773 0.91158 0.93120 0.90834 1.42245 1.19077 1.28943 1.44929 1.19660 1.01573 1.01364 1.14482 0.90178 1.25602 0.97774 1.02898 1.00694 1.69847 1.12784 1.43053 1.36332 0.85113 0.76485 0.79502 0.78489 1.21204 1.22619 1.19345 1.23403 0.98228 0.94535 0.95184 1.22670 0.98499 1.00484 0.95526 1.22682 0.94895 0.99189 0.99224 1.22553 0.91597 1.00561 0.98667 1.23421 1.01675 0.86183 0.88019 1.68151 1.07467 1.28857 1.20524 0.90857 0.88116 0.89202 0.92276 0.88413 0.91705 0.77243 0.74354 0.94269 0.88243 0.79501 0.94132 0.90219 0.93721 0.90903 0.89609 0.89487 0.88076 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.09 10.28 127.77 1.31 1.41 16 2 N -0.59 -5.73 3.37 -753.50 -2.54 -8.27 16 3 C 0.09 0.69 10.50 127.77 1.34 2.03 16 4 C 0.37 6.14 7.37 133.34 0.98 7.13 16 5 C 0.01 0.09 10.42 85.15 0.89 0.98 16 6 N -0.38 -8.21 9.69 -183.79 -1.78 -9.99 16 7 C -0.07 -1.94 6.74 41.74 0.28 -1.66 16 8 C 0.57 19.31 7.80 86.78 0.68 19.99 16 9 O -0.58 -24.39 15.97 -3.92 -0.06 -24.45 16 10 N -0.68 -20.61 5.28 -444.03 -2.35 -22.96 16 11 C 0.14 5.25 4.01 45.28 0.18 5.43 16 12 H 0.07 3.27 7.54 -2.39 -0.02 3.25 16 13 C -0.17 -6.45 7.68 31.23 0.24 -6.21 16 14 C 0.18 7.33 4.35 45.28 0.20 7.53 16 15 H 0.07 2.85 8.12 -2.39 -0.02 2.83 16 16 N -0.71 -37.15 4.91 -321.55 -1.58 -38.73 16 17 C -0.24 -13.52 9.98 84.04 0.84 -12.69 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 20 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 21 Si 0.98 47.38 29.55 68.60 2.03 49.40 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 25 C -0.11 -3.63 0.91 -52.31 -0.05 -3.68 16 26 C -0.13 -4.45 7.60 30.88 0.23 -4.22 16 27 C -0.12 -3.13 8.08 31.23 0.25 -2.88 16 28 C -0.10 -2.23 7.16 30.89 0.22 -2.01 16 29 C 0.17 4.31 10.76 84.94 0.91 5.22 16 30 N -0.53 -11.71 9.22 -191.74 -1.77 -13.47 16 31 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.10 -0.24 8.07 -2.39 -0.02 -0.26 16 33 H 0.09 -0.09 5.98 -2.38 -0.01 -0.11 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.10 0.24 8.07 -2.39 -0.02 0.23 16 36 H 0.06 0.80 7.30 -2.38 -0.02 0.79 16 37 H 0.21 1.30 6.03 -2.91 -0.02 1.28 16 38 H 0.42 10.23 6.26 -92.71 -0.58 9.65 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.10 3.12 8.14 -2.39 -0.02 3.11 16 41 H 0.37 21.27 7.48 -92.71 -0.69 20.57 16 42 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.04 1.82 7.51 -2.39 -0.02 1.80 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.10 1.93 6.96 -2.39 -0.02 1.92 16 49 H 0.18 4.50 7.63 -2.91 -0.02 4.48 16 Total: -1.00 -78.22 399.75 0.93 -77.29 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -0.28 Total: 40.04 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 8.98 Total: 12.27 kcal Atomic # 7 Polarization: -144.82 SS G_CDS: -9.73 Total: -154.56 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.06 Total: -24.45 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Total: -78.22 0.93 -77.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078629958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.926 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds