Wall clock time and date at job start Wed Apr 1 2020 03:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.38507 * 120.00337 * 179.97438 * 2 1 3 5 5 C 1.39600 * 120.04650 * 4.72916 * 4 2 1 6 6 C 1.38291 * 118.02748 * 179.73297 * 5 4 2 7 7 C 1.40066 * 117.99098 * 0.53105 * 6 5 4 8 8 C 1.47867 * 120.09422 * 179.74699 * 7 6 5 9 9 O 1.21556 * 119.99664 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99773 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99766 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.88349 * 26.84528 * 11 10 8 13 13 C 1.53945 * 113.66486 * 255.49538 * 11 10 8 14 14 C 1.53951 * 87.29644 * 270.26522 * 13 11 10 15 15 H 1.09002 * 113.66006 * 220.79438 * 14 13 11 16 16 N 1.46493 * 113.66295 * 89.82678 * 14 13 11 17 17 C 1.36938 * 119.99944 * 104.51071 * 16 14 13 18 18 H 1.08006 * 120.00206 * 359.97438 * 17 16 14 19 19 C 1.38819 * 120.00244 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99770 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99676 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47183 * 90.00500 * 21 19 17 23 23 H 1.48497 * 109.46896 * 210.00500 * 21 19 17 24 24 H 1.48494 * 109.47253 * 329.99910 * 21 19 17 25 25 C 1.52910 * 86.78038 * 335.26297 * 14 13 11 26 26 C 1.52909 * 121.13846 * 150.62524 * 25 14 13 27 27 C 1.53949 * 86.78434 * 100.81289 * 26 25 14 28 28 C 1.52910 * 121.13738 * 259.18383 * 25 14 13 29 29 N 1.32757 * 119.80963 * 359.71811 * 7 6 5 30 30 N 1.28350 * 122.10536 * 0.02562 * 29 7 6 31 31 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 33 33 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 34 34 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 35 35 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 36 36 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 37 37 H 1.08003 * 120.98225 * 359.97438 * 5 4 2 38 38 H 1.07996 * 121.00380 * 180.26778 * 6 5 4 39 39 H 0.96992 * 120.00616 * 0.02562 * 10 8 7 40 40 H 1.09004 * 113.57622 * 24.86212 * 13 11 10 41 41 H 1.09001 * 113.58259 * 155.65439 * 13 11 10 42 42 H 0.97001 * 120.00627 * 284.50329 * 16 14 13 43 43 H 0.97008 * 119.99613 * 179.97438 * 20 19 17 44 44 H 1.09001 * 113.66458 * 215.28715 * 26 25 14 45 45 H 1.09001 * 113.66169 * 346.34337 * 26 25 14 46 46 H 1.09000 * 113.58122 * 270.13804 * 27 26 25 47 47 H 1.09002 * 113.58044 * 139.34037 * 27 26 25 48 48 H 1.09006 * 113.65878 * 13.65592 * 28 25 14 49 49 H 1.08997 * 113.66617 * 144.71304 * 28 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1576 -1.1995 0.0005 5 6 1.4642 -2.4070 -0.0986 6 6 2.1977 -3.5794 -0.0997 7 6 3.5908 -3.4833 0.0101 8 6 4.4200 -4.7075 0.0194 9 8 3.8927 -5.7993 -0.0679 10 7 5.7602 -4.6128 0.1246 11 6 6.5818 -5.8258 0.1343 12 1 6.1147 -6.6583 -0.3920 13 6 7.1168 -6.1986 1.5289 14 6 8.3449 -5.3264 1.2106 15 1 9.2877 -5.7603 1.5436 16 7 8.1901 -3.9253 1.6094 17 6 8.8315 -3.4560 2.7246 18 1 9.4511 -4.1189 3.3104 19 6 8.6845 -2.1284 3.1028 20 7 9.3005 -1.6776 4.1750 21 14 7.6123 -0.9820 2.0901 22 1 6.2198 -1.0237 2.6040 23 1 8.1361 0.4038 2.1914 24 1 7.6290 -1.4147 0.6696 25 6 8.0379 -5.5841 -0.2650 26 6 8.4035 -4.5593 -1.3394 27 6 9.6232 -5.4466 -1.6476 28 6 8.8214 -6.6249 -1.0655 29 7 4.1646 -2.2899 0.1053 30 7 3.4823 -1.2027 0.1011 31 1 -0.3634 1.0277 0.0005 32 1 -0.3633 -0.5138 0.8900 33 1 -0.3633 -0.5139 -0.8900 34 1 2.3791 1.5835 1.0277 35 1 3.1499 1.1384 -0.5139 36 1 1.6083 2.0284 -0.5138 37 1 0.3871 -2.4249 -0.1760 38 1 1.7109 -4.5401 -0.1785 39 1 6.1809 -3.7417 0.1946 40 1 6.5082 -5.8128 2.3468 41 1 7.3505 -7.2577 1.6375 42 1 7.6335 -3.3299 1.0835 43 1 9.1981 -0.7497 4.4390 44 1 7.6837 -4.5060 -2.1562 45 1 8.6651 -3.5799 -0.9388 46 1 10.5075 -5.1903 -1.0641 47 1 9.8325 -5.5455 -2.7128 48 1 9.4169 -7.2957 -0.4461 49 1 8.2191 -7.1521 -1.8053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078786343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:34 Heat of formation + Delta-G solvation = 106.725843 kcal Electronic energy + Delta-G solvation = -31203.638607 eV Core-core repulsion = 27169.024037 eV Total energy + Delta-G solvation = -4034.614571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26072 -40.58305 -38.75631 -37.27234 -35.34417 -33.77811 -33.20053 -32.49920 -31.43259 -30.30511 -28.79170 -26.58454 -25.49503 -24.86773 -24.44423 -24.16692 -22.91179 -22.02289 -20.76275 -20.14689 -18.94004 -17.98485 -17.68079 -17.34020 -16.85722 -15.99760 -15.76027 -15.22668 -15.14164 -15.01379 -14.86411 -14.56431 -14.46115 -14.01306 -13.80263 -13.64288 -13.25792 -13.02093 -12.79461 -12.65269 -12.55754 -12.29147 -12.15787 -11.95225 -11.82292 -11.73612 -11.41954 -10.99660 -10.86411 -10.81821 -10.70519 -10.36905 -10.15594 -10.13258 -9.87270 -9.77747 -9.71000 -9.56799 -9.42100 -8.82442 -8.63492 -8.17135 -7.26466 -5.74823 -3.11945 0.61692 0.74011 2.41374 2.77975 3.19253 3.48207 3.50990 3.61632 3.72506 4.00717 4.30128 4.42737 4.53712 4.64306 4.66248 4.67321 4.86330 4.87206 4.95516 4.97760 5.02524 5.11449 5.15316 5.26879 5.30491 5.40117 5.41241 5.57237 5.58637 5.65929 5.67627 5.82807 5.87334 5.94334 5.95367 5.98974 6.14440 6.19404 6.30357 6.42784 6.56443 6.58390 6.65721 6.74280 6.75075 6.85773 7.00243 7.71897 8.01069 8.31543 8.43782 8.64388 9.20572 9.93457 10.10888 11.42313 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.004193 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.349879 B = 6675.855991 C = 8512.591694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.602 5.602 3 C 0.092 3.908 4 C 0.350 3.650 5 C -0.189 4.189 6 C -0.023 4.023 7 C -0.033 4.033 8 C 0.584 3.416 9 O -0.543 6.543 10 N -0.681 5.681 11 C 0.133 3.867 12 H 0.096 0.904 13 C -0.183 4.183 14 C 0.197 3.803 15 H 0.074 0.926 16 N -0.724 5.724 17 C -0.248 4.248 18 H 0.093 0.907 19 C 0.009 3.991 20 N -0.931 5.931 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.274 1.274 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.133 4.133 28 C -0.104 4.104 29 N -0.160 5.160 30 N -0.297 5.297 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.410 0.590 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.359 0.641 43 H 0.259 0.741 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.718 -1.023 -13.373 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.315 5.315 3 C -0.051 4.051 4 C 0.110 3.890 5 C -0.222 4.222 6 C -0.052 4.052 7 C -0.184 4.184 8 C 0.368 3.632 9 O -0.420 6.420 10 N -0.331 5.331 11 C 0.028 3.972 12 H 0.114 0.886 13 C -0.225 4.225 14 C 0.085 3.915 15 H 0.092 0.908 16 N -0.366 5.366 17 C -0.377 4.377 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.578 5.578 21 Si 0.709 3.291 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.200 1.200 25 C -0.132 4.132 26 C -0.168 4.168 27 C -0.171 4.171 28 C -0.142 4.142 29 N -0.007 5.007 30 N -0.151 5.151 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.248 0.752 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.658 -0.665 -13.055 20.397 hybrid contribution -2.084 0.713 -0.578 2.277 sum -17.741 0.048 -13.633 22.374 Atomic orbital electron populations 1.21801 0.77889 1.03605 1.01828 1.46102 1.05463 1.03029 1.76916 1.21776 0.97711 0.83249 1.02318 1.20162 0.91477 0.87066 0.90263 1.21743 1.01868 0.91009 1.07541 1.22126 0.92756 0.99984 0.90300 1.22517 0.93664 0.94505 1.07726 1.17395 0.82237 0.86850 0.76706 1.90750 1.72763 1.27023 1.51433 1.45592 1.05438 1.10761 1.71351 1.21777 0.89800 0.86981 0.98598 0.88647 1.24254 1.01181 1.00489 0.96556 1.20811 0.96018 0.85795 0.88853 0.90811 1.42506 1.57634 1.05404 1.31013 1.19053 1.23094 0.94841 1.00715 0.88907 1.24663 0.99739 0.96858 0.97480 1.69711 1.46667 1.15552 1.25837 0.86653 0.81058 0.80947 0.80415 1.20433 1.21848 1.20027 1.23560 0.94257 0.98435 0.96967 1.22621 0.97613 0.98834 0.97757 1.22756 0.97624 0.96548 1.00152 1.22500 0.97704 0.95705 0.98262 1.73078 1.30134 0.94487 1.03013 1.73227 1.03549 1.19578 1.18764 0.89744 0.92003 0.92026 0.92505 0.89951 0.91191 0.83105 0.82142 0.75162 0.90692 0.89888 0.80668 0.93074 0.90755 0.90582 0.89816 0.92042 0.91030 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 9.42 59.85 0.56 1.07 16 2 N -0.60 -5.94 3.38 -189.53 -0.64 -6.58 16 3 C 0.09 0.83 10.39 59.85 0.62 1.46 16 4 C 0.35 4.59 7.44 -154.94 -1.15 3.43 16 5 C -0.19 -2.05 9.40 -39.05 -0.37 -2.42 16 6 C -0.02 -0.29 9.71 -38.88 -0.38 -0.67 16 7 C -0.03 -0.55 6.83 -82.84 -0.57 -1.12 16 8 C 0.58 10.48 7.80 -12.32 -0.10 10.39 16 9 O -0.54 -10.22 16.02 5.32 0.09 -10.13 16 10 N -0.68 -12.43 4.92 -54.30 -0.27 -12.69 16 11 C 0.13 2.25 4.08 -67.48 -0.28 1.97 16 12 H 0.10 1.55 7.54 -51.93 -0.39 1.15 16 13 C -0.18 -3.26 7.68 -25.75 -0.20 -3.46 16 14 C 0.20 3.81 4.35 -67.48 -0.29 3.52 16 15 H 0.07 1.44 8.12 -51.93 -0.42 1.02 16 16 N -0.72 -17.12 4.57 -52.99 -0.24 -17.36 16 17 C -0.25 -6.99 10.46 -15.06 -0.16 -7.15 16 18 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 21 Si 0.88 23.15 27.74 -169.99 -4.71 18.43 16 22 H -0.28 -7.49 7.11 56.52 0.40 -7.08 16 23 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.27 -6.81 6.52 56.52 0.37 -6.44 16 25 C -0.13 -2.07 0.77 -154.71 -0.12 -2.19 16 26 C -0.13 -2.05 7.18 -26.28 -0.19 -2.24 16 27 C -0.13 -1.79 8.08 -25.75 -0.21 -2.00 16 28 C -0.10 -1.33 7.84 -26.28 -0.21 -1.54 16 29 N -0.16 -2.96 10.73 33.32 0.36 -2.60 16 30 N -0.30 -5.05 10.34 31.21 0.32 -4.73 16 31 H 0.08 0.30 7.79 -51.93 -0.40 -0.11 16 32 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 33 H 0.06 0.27 7.77 -51.93 -0.40 -0.14 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.89 7.46 -51.93 -0.39 0.51 16 36 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 37 H 0.15 1.04 6.81 -52.48 -0.36 0.68 16 38 H 0.16 1.73 7.71 -52.49 -0.40 1.32 16 39 H 0.41 8.08 5.54 -40.82 -0.23 7.86 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.36 8.47 2.99 -40.82 -0.12 8.35 16 43 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.38 7.51 -51.93 -0.39 0.99 16 46 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -35.16 396.12 -8.78 -43.94 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -7.31 Total: 15.26 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.11 Total: -0.78 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: 0.31 Total: -72.69 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.71 Total: 18.43 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.16 -8.78 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078786343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.666 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds