Wall clock time and date at job start Wed Apr 1 2020 03:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.38507 * 120.00337 * 179.97438 * 2 1 3 5 5 C 1.39600 * 120.04650 * 4.72916 * 4 2 1 6 6 C 1.38291 * 118.02748 * 179.73297 * 5 4 2 7 7 C 1.40066 * 117.99098 * 0.53105 * 6 5 4 8 8 C 1.47867 * 120.09422 * 179.74699 * 7 6 5 9 9 O 1.21556 * 119.99664 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99773 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99766 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.88349 * 26.84528 * 11 10 8 13 13 C 1.53945 * 113.66486 * 255.49538 * 11 10 8 14 14 C 1.53951 * 87.29644 * 270.26522 * 13 11 10 15 15 H 1.09002 * 113.66006 * 220.79438 * 14 13 11 16 16 N 1.46493 * 113.66295 * 89.82678 * 14 13 11 17 17 C 1.36938 * 119.99944 * 104.51071 * 16 14 13 18 18 H 1.08006 * 120.00206 * 359.97438 * 17 16 14 19 19 C 1.38819 * 120.00244 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99770 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99676 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47183 * 90.00500 * 21 19 17 23 23 H 1.48497 * 109.46896 * 210.00500 * 21 19 17 24 24 H 1.48494 * 109.47253 * 329.99910 * 21 19 17 25 25 C 1.52910 * 86.78038 * 335.26297 * 14 13 11 26 26 C 1.52909 * 121.13846 * 150.62524 * 25 14 13 27 27 C 1.53949 * 86.78434 * 100.81289 * 26 25 14 28 28 C 1.52910 * 121.13738 * 259.18383 * 25 14 13 29 29 N 1.32757 * 119.80963 * 359.71811 * 7 6 5 30 30 N 1.28350 * 122.10536 * 0.02562 * 29 7 6 31 31 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 33 33 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 34 34 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 35 35 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 36 36 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 37 37 H 1.08003 * 120.98225 * 359.97438 * 5 4 2 38 38 H 1.07996 * 121.00380 * 180.26778 * 6 5 4 39 39 H 0.96992 * 120.00616 * 0.02562 * 10 8 7 40 40 H 1.09004 * 113.57622 * 24.86212 * 13 11 10 41 41 H 1.09001 * 113.58259 * 155.65439 * 13 11 10 42 42 H 0.97001 * 120.00627 * 284.50329 * 16 14 13 43 43 H 0.97008 * 119.99613 * 179.97438 * 20 19 17 44 44 H 1.09001 * 113.66458 * 215.28715 * 26 25 14 45 45 H 1.09001 * 113.66169 * 346.34337 * 26 25 14 46 46 H 1.09000 * 113.58122 * 270.13804 * 27 26 25 47 47 H 1.09002 * 113.58044 * 139.34037 * 27 26 25 48 48 H 1.09006 * 113.65878 * 13.65592 * 28 25 14 49 49 H 1.08997 * 113.66617 * 144.71304 * 28 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1576 -1.1995 0.0005 5 6 1.4642 -2.4070 -0.0986 6 6 2.1977 -3.5794 -0.0997 7 6 3.5908 -3.4833 0.0101 8 6 4.4200 -4.7075 0.0194 9 8 3.8927 -5.7993 -0.0679 10 7 5.7602 -4.6128 0.1246 11 6 6.5818 -5.8258 0.1343 12 1 6.1147 -6.6583 -0.3920 13 6 7.1168 -6.1986 1.5289 14 6 8.3449 -5.3264 1.2106 15 1 9.2877 -5.7603 1.5436 16 7 8.1901 -3.9253 1.6094 17 6 8.8315 -3.4560 2.7246 18 1 9.4511 -4.1189 3.3104 19 6 8.6845 -2.1284 3.1028 20 7 9.3005 -1.6776 4.1750 21 14 7.6123 -0.9820 2.0901 22 1 6.2198 -1.0237 2.6040 23 1 8.1361 0.4038 2.1914 24 1 7.6290 -1.4147 0.6696 25 6 8.0379 -5.5841 -0.2650 26 6 8.4035 -4.5593 -1.3394 27 6 9.6232 -5.4466 -1.6476 28 6 8.8214 -6.6249 -1.0655 29 7 4.1646 -2.2899 0.1053 30 7 3.4823 -1.2027 0.1011 31 1 -0.3634 1.0277 0.0005 32 1 -0.3633 -0.5138 0.8900 33 1 -0.3633 -0.5139 -0.8900 34 1 2.3791 1.5835 1.0277 35 1 3.1499 1.1384 -0.5139 36 1 1.6083 2.0284 -0.5138 37 1 0.3871 -2.4249 -0.1760 38 1 1.7109 -4.5401 -0.1785 39 1 6.1809 -3.7417 0.1946 40 1 6.5082 -5.8128 2.3468 41 1 7.3505 -7.2577 1.6375 42 1 7.6335 -3.3299 1.0835 43 1 9.1981 -0.7497 4.4390 44 1 7.6837 -4.5060 -2.1562 45 1 8.6651 -3.5799 -0.9388 46 1 10.5075 -5.1903 -1.0641 47 1 9.8325 -5.5455 -2.7128 48 1 9.4169 -7.2957 -0.4461 49 1 8.2191 -7.1521 -1.8053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078786343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:33 Heat of formation + Delta-G solvation = 82.734404 kcal Electronic energy + Delta-G solvation = -31204.678954 eV Core-core repulsion = 27169.024037 eV Total energy + Delta-G solvation = -4035.654917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.39036 -41.86348 -40.03892 -38.12983 -36.76658 -35.54800 -34.23686 -34.04455 -32.79022 -32.08439 -29.40804 -27.60213 -26.80059 -26.25276 -25.63963 -25.47921 -24.24299 -23.27972 -22.12362 -21.47251 -20.52249 -19.41767 -18.88005 -18.47619 -18.10245 -17.14312 -16.90037 -16.66807 -16.51947 -16.33606 -16.08541 -15.67059 -15.52011 -15.40744 -15.09130 -14.90943 -14.63217 -14.39039 -13.90403 -13.78621 -13.55465 -13.52679 -13.41602 -13.16043 -13.00820 -12.93598 -12.76887 -12.70518 -12.57542 -12.16741 -11.97675 -11.88638 -11.78870 -11.42767 -11.37926 -11.30132 -11.08105 -10.90609 -10.78735 -10.72777 -10.00258 -9.32801 -9.02192 -8.07452 -5.39224 -0.46753 -0.23118 1.31421 1.38328 1.43086 1.54608 1.64611 1.94066 2.41139 2.58685 2.89355 3.23529 3.26763 3.40180 3.50617 3.55650 3.67562 3.76436 3.89959 3.93360 3.94542 4.05627 4.12990 4.16007 4.34074 4.42943 4.46987 4.56293 4.63576 4.67062 4.73020 4.75210 4.83231 4.84658 4.85705 4.91859 4.95578 4.98091 5.08323 5.14453 5.16058 5.22522 5.48847 5.57603 5.59860 5.77021 5.86278 5.92624 6.18014 6.32006 6.93048 7.02907 7.56476 7.79888 7.95752 9.13364 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.004193 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.349879 B = 6675.855991 C = 8512.591694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.596 5.596 3 C 0.087 3.913 4 C 0.340 3.660 5 C -0.165 4.165 6 C -0.026 4.026 7 C -0.056 4.056 8 C 0.583 3.417 9 O -0.556 6.556 10 N -0.689 5.689 11 C 0.135 3.865 12 H 0.110 0.890 13 C -0.176 4.176 14 C 0.176 3.824 15 H 0.070 0.930 16 N -0.729 5.729 17 C -0.224 4.224 18 H 0.068 0.932 19 C -0.051 4.051 20 N -0.976 5.976 21 Si 0.939 3.061 22 H -0.290 1.290 23 H -0.294 1.294 24 H -0.258 1.258 25 C -0.121 4.121 26 C -0.136 4.136 27 C -0.127 4.127 28 C -0.087 4.087 29 N -0.200 5.200 30 N -0.340 5.340 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.199 0.801 38 H 0.182 0.818 39 H 0.401 0.599 40 H 0.043 0.957 41 H 0.114 0.886 42 H 0.360 0.640 43 H 0.257 0.743 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.583 -1.951 -15.973 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.308 5.308 3 C -0.055 4.055 4 C 0.099 3.901 5 C -0.198 4.198 6 C -0.054 4.054 7 C -0.209 4.209 8 C 0.368 3.632 9 O -0.434 6.434 10 N -0.338 5.338 11 C 0.030 3.970 12 H 0.128 0.872 13 C -0.217 4.217 14 C 0.066 3.934 15 H 0.088 0.912 16 N -0.371 5.371 17 C -0.355 4.355 18 H 0.086 0.914 19 C -0.243 4.243 20 N -0.627 5.627 21 Si 0.768 3.232 22 H -0.217 1.217 23 H -0.221 1.221 24 H -0.183 1.183 25 C -0.123 4.123 26 C -0.174 4.174 27 C -0.164 4.164 28 C -0.125 4.125 29 N -0.046 5.046 30 N -0.195 5.195 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.216 0.784 38 H 0.199 0.801 39 H 0.238 0.762 40 H 0.062 0.938 41 H 0.132 0.868 42 H 0.194 0.806 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.559 -1.615 -15.703 24.364 hybrid contribution -1.294 1.017 0.253 1.665 sum -19.853 -0.598 -15.450 25.163 Atomic orbital electron populations 1.22181 0.74877 1.05797 1.03158 1.46529 1.07209 1.02090 1.74946 1.21863 0.97626 0.83948 1.02093 1.20525 0.90773 0.89172 0.89661 1.22176 1.03749 0.89186 1.04686 1.22369 0.91279 1.01689 0.90040 1.22512 0.95196 0.93553 1.09597 1.17652 0.82148 0.87336 0.76033 1.90717 1.72902 1.27556 1.52259 1.45719 1.05914 1.10628 1.71541 1.21854 0.90346 0.87003 0.97764 0.87185 1.24191 0.99521 1.01665 0.96322 1.21101 0.96528 0.83671 0.92068 0.91214 1.42479 1.57337 1.07440 1.29826 1.19067 1.21204 0.94187 1.01030 0.91414 1.25255 1.01769 0.98493 0.98818 1.69842 1.49147 1.15786 1.27911 0.85675 0.78539 0.78971 0.79992 1.21678 1.22084 1.18286 1.23449 0.93590 1.00466 0.94781 1.22672 0.99344 0.97433 0.97942 1.22723 0.96195 0.95815 1.01692 1.22542 0.96968 0.95056 0.97948 1.72938 1.31757 0.95293 1.04586 1.73061 1.05890 1.19370 1.21148 0.87378 0.91092 0.90041 0.93187 0.92359 0.87440 0.78443 0.80093 0.76215 0.93802 0.86810 0.80559 0.93397 0.89434 0.93737 0.91040 0.89468 0.89751 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 9.42 127.77 1.20 1.75 16 2 N -0.60 -10.31 3.38 -753.55 -2.54 -12.86 16 3 C 0.09 1.46 10.39 127.77 1.33 2.78 16 4 C 0.34 8.42 7.44 133.21 0.99 9.41 16 5 C -0.17 -3.13 9.40 22.61 0.21 -2.91 16 6 C -0.03 -0.62 9.71 22.73 0.22 -0.40 16 7 C -0.06 -1.87 6.83 42.00 0.29 -1.58 16 8 C 0.58 20.91 7.80 86.79 0.68 21.59 16 9 O -0.56 -20.49 16.02 -3.89 -0.06 -20.55 16 10 N -0.69 -25.25 4.92 -443.99 -2.18 -27.43 16 11 C 0.13 4.40 4.08 45.28 0.18 4.58 16 12 H 0.11 3.30 7.54 -2.39 -0.02 3.29 16 13 C -0.18 -6.17 7.68 31.23 0.24 -5.93 16 14 C 0.18 6.82 4.35 45.28 0.20 7.02 16 15 H 0.07 2.73 8.12 -2.39 -0.02 2.71 16 16 N -0.73 -35.37 4.57 -321.56 -1.47 -36.84 16 17 C -0.22 -13.12 10.46 84.04 0.88 -12.25 16 18 H 0.07 4.25 8.06 -2.91 -0.02 4.23 16 19 C -0.05 -3.16 5.50 84.86 0.47 -2.69 16 20 N -0.98 -64.36 13.97 21.65 0.30 -64.06 16 21 Si 0.94 50.24 27.74 68.60 1.90 52.15 16 22 H -0.29 -15.94 7.11 99.48 0.71 -15.24 16 23 H -0.29 -15.68 7.11 99.48 0.71 -14.98 16 24 H -0.26 -12.87 6.52 99.48 0.65 -12.23 16 25 C -0.12 -3.68 0.77 -52.31 -0.04 -3.72 16 26 C -0.14 -4.12 7.18 30.88 0.22 -3.90 16 27 C -0.13 -3.09 8.08 31.23 0.25 -2.84 16 28 C -0.09 -1.95 7.84 30.89 0.24 -1.71 16 29 N -0.20 -7.54 10.73 -48.50 -0.52 -8.06 16 30 N -0.34 -11.71 10.34 -55.17 -0.57 -12.28 16 31 H 0.11 0.26 7.79 -2.39 -0.02 0.24 16 32 H 0.07 0.41 8.11 -2.39 -0.02 0.39 16 33 H 0.08 0.29 7.77 -2.38 -0.02 0.27 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 1.27 7.46 -2.39 -0.02 1.26 16 36 H 0.11 0.96 7.92 -2.38 -0.02 0.94 16 37 H 0.20 1.72 6.81 -2.91 -0.02 1.70 16 38 H 0.18 3.46 7.71 -2.91 -0.02 3.44 16 39 H 0.40 16.20 5.54 -92.71 -0.51 15.68 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.36 17.42 2.99 -92.71 -0.28 17.14 16 43 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 44 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.04 1.62 7.51 -2.39 -0.02 1.61 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -81.81 396.12 2.55 -79.27 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: 0.13 Total: 41.46 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 7.56 Total: 9.21 kcal Atomic # 7 Polarization: -154.54 SS G_CDS: -6.99 Total: -161.52 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.55 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 1.90 Total: 52.15 kcal Total: -81.81 2.55 -79.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078786343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.000 kcal (2) G-P(sol) polarization free energy of solvation -81.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds