Wall clock time and date at job start Wed Apr 1 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99928 * 2 1 4 4 C 1.38498 * 119.99657 * 179.97438 * 2 1 3 5 5 C 1.39607 * 120.05406 * 4.73012 * 4 2 1 6 6 C 1.38282 * 118.02955 * 179.78132 * 5 4 2 7 7 C 1.40067 * 117.99410 * 0.47894 * 6 5 4 8 8 C 1.47859 * 120.09343 * 179.72765 * 7 6 5 9 9 O 1.21555 * 120.00157 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99982 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00319 * 180.02562 * 10 8 7 12 12 H 1.09006 * 112.88365 * 333.15703 * 11 10 8 13 13 C 1.53946 * 113.66354 * 104.50462 * 11 10 8 14 14 C 1.53953 * 87.29360 * 139.20839 * 13 11 10 15 15 H 1.09004 * 113.66013 * 220.78938 * 14 13 11 16 16 N 1.46508 * 113.66166 * 89.82962 * 14 13 11 17 17 C 1.36938 * 119.99871 * 104.50363 * 16 14 13 18 18 H 1.08003 * 119.99719 * 0.02562 * 17 16 14 19 19 C 1.38806 * 119.99878 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00246 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00047 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47103 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47236 * 119.99663 * 21 19 17 24 24 H 1.48503 * 109.46803 * 239.99820 * 21 19 17 25 25 C 1.52907 * 113.66408 * 201.69620 * 11 10 8 26 26 C 1.52904 * 121.14562 * 94.90638 * 25 11 10 27 27 C 1.53955 * 86.78320 * 209.37593 * 26 25 11 28 28 C 1.52912 * 121.13791 * 346.33782 * 25 11 10 29 29 N 1.32748 * 119.80860 * 359.75079 * 7 6 5 30 30 N 1.28361 * 122.10666 * 0.02562 * 29 7 6 31 31 H 1.09001 * 109.47060 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47073 * 120.00208 * 1 2 3 33 33 H 1.09000 * 109.47212 * 240.00290 * 1 2 3 34 34 H 1.08996 * 109.47008 * 90.00093 * 3 2 1 35 35 H 1.08997 * 109.46865 * 209.99779 * 3 2 1 36 36 H 1.08998 * 109.47058 * 329.99292 * 3 2 1 37 37 H 1.07999 * 120.98027 * 359.97438 * 5 4 2 38 38 H 1.08000 * 120.99994 * 180.21534 * 6 5 4 39 39 H 0.97002 * 119.99749 * 0.02562 * 10 8 7 40 40 H 1.08998 * 113.57972 * 253.81064 * 13 11 10 41 41 H 1.08999 * 113.58172 * 24.52746 * 13 11 10 42 42 H 0.96992 * 119.99762 * 284.50676 * 16 14 13 43 43 H 0.97001 * 119.99906 * 180.02562 * 20 19 17 44 44 H 1.09004 * 113.66047 * 323.84483 * 26 25 11 45 45 H 1.08996 * 113.66520 * 94.89839 * 26 25 11 46 46 H 1.08992 * 113.58063 * 270.12608 * 27 26 25 47 47 H 1.09005 * 113.64767 * 139.34959 * 27 26 25 48 48 H 1.09003 * 113.66370 * 265.10216 * 28 25 11 49 49 H 1.09003 * 113.65882 * 36.15803 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1575 -1.1995 0.0005 5 6 1.4641 -2.4071 -0.0986 6 6 2.1975 -3.5794 -0.0987 7 6 3.5905 -3.4834 0.0110 8 6 4.4195 -4.7078 0.0218 9 8 3.8922 -5.7995 -0.0651 10 7 5.7597 -4.6132 0.1279 11 6 6.5812 -5.8262 0.1380 12 1 6.0456 -6.6977 0.5148 13 6 7.3223 -6.0816 -1.1869 14 6 8.5373 -6.5044 -0.3412 15 1 9.4890 -6.1437 -0.7317 16 7 8.5594 -7.9329 -0.0167 17 6 9.4187 -8.7715 -0.6751 18 1 10.0805 -8.3796 -1.4334 19 6 9.4392 -10.1250 -0.3680 20 7 8.6330 -10.6024 0.5564 21 14 10.6120 -11.2688 -1.2657 22 1 11.4059 -10.4905 -2.2502 23 1 11.5267 -11.9081 -0.2861 24 1 9.8351 -12.3170 -1.9749 25 6 7.9590 -5.6291 0.7712 26 6 8.2066 -5.9564 2.2441 27 6 9.2843 -4.8573 2.2175 28 6 8.5111 -4.2294 1.0436 29 7 4.1644 -2.2901 0.1057 30 7 3.4822 -1.2028 0.1012 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 -0.3634 -0.5138 0.8900 34 1 2.3792 1.5833 1.0276 35 1 3.1499 1.1383 -0.5138 36 1 1.6085 2.0283 -0.5139 37 1 0.3870 -2.4250 -0.1761 38 1 1.7104 -4.5402 -0.1766 39 1 6.1805 -3.7420 0.1976 40 1 6.8964 -6.8944 -1.7751 41 1 7.4908 -5.1784 -1.7734 42 1 7.9652 -8.2847 0.6645 43 1 8.6476 -11.5482 0.7713 44 1 7.3611 -5.7244 2.8919 45 1 8.6061 -6.9570 2.4088 46 1 10.2734 -5.2231 1.9423 47 1 9.2974 -4.2359 3.1130 48 1 9.1540 -3.8505 0.2491 49 1 7.7512 -3.5122 1.3539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078786344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:38 Heat of formation + Delta-G solvation = 97.616554 kcal Electronic energy + Delta-G solvation = -29970.709348 eV Core-core repulsion = 25935.699769 eV Total energy + Delta-G solvation = -4035.009579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36564 -40.42557 -38.77402 -37.40547 -34.98705 -34.08909 -33.33253 -32.52851 -31.58800 -29.55998 -28.94451 -26.66973 -25.44446 -24.90528 -24.36882 -24.10892 -23.05416 -22.23648 -20.70661 -20.26968 -18.58398 -17.89643 -17.75900 -17.23988 -16.87010 -16.14383 -15.80393 -15.28675 -15.12240 -15.00053 -14.97776 -14.63931 -14.35605 -14.03379 -13.86634 -13.64033 -13.18626 -13.01447 -12.92755 -12.59709 -12.48012 -12.46204 -12.07506 -11.93241 -11.83520 -11.56301 -11.29784 -10.99759 -10.86566 -10.80768 -10.66890 -10.48862 -10.10474 -10.06452 -9.95764 -9.85747 -9.74420 -9.51059 -9.43005 -8.82536 -8.58195 -8.30268 -6.95116 -5.75361 -3.04694 0.47946 0.59937 2.26017 2.71989 3.23482 3.45506 3.51163 3.53463 3.62064 3.89125 4.15511 4.30924 4.48936 4.53200 4.56614 4.73301 4.81304 4.85013 4.86364 4.99015 5.03887 5.08354 5.11529 5.25918 5.29487 5.37866 5.39266 5.50413 5.54515 5.71820 5.76135 5.90498 5.99096 6.05830 6.07875 6.12696 6.22123 6.29981 6.41482 6.50405 6.60132 6.63919 6.72320 6.79031 6.85747 6.94734 7.14706 7.71417 7.74750 8.31822 8.42932 8.47416 9.54131 10.10693 10.45458 11.46784 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.002192 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.759851 B =12770.089126 C =13512.694615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.602 5.602 3 C 0.094 3.906 4 C 0.349 3.651 5 C -0.188 4.188 6 C -0.024 4.024 7 C -0.027 4.027 8 C 0.576 3.424 9 O -0.533 6.533 10 N -0.694 5.694 11 C 0.137 3.863 12 H 0.115 0.885 13 C -0.181 4.181 14 C 0.197 3.803 15 H 0.067 0.933 16 N -0.701 5.701 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.012 4.012 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.116 4.116 29 N -0.167 5.167 30 N -0.303 5.303 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.406 0.594 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 25.316 0.726 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.316 5.316 3 C -0.048 4.048 4 C 0.110 3.890 5 C -0.221 4.221 6 C -0.052 4.052 7 C -0.178 4.178 8 C 0.359 3.641 9 O -0.409 6.409 10 N -0.344 5.344 11 C 0.033 3.967 12 H 0.132 0.868 13 C -0.224 4.224 14 C 0.084 3.916 15 H 0.085 0.915 16 N -0.339 5.339 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.123 4.123 26 C -0.163 4.163 27 C -0.170 4.170 28 C -0.154 4.154 29 N -0.013 5.013 30 N -0.157 5.157 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.243 0.757 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.222 0.778 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.959 25.436 0.708 29.517 hybrid contribution -1.000 -1.094 -0.361 1.526 sum -15.959 24.342 0.347 29.109 Atomic orbital electron populations 1.21817 0.77837 1.03639 1.01946 1.46093 1.05498 1.02985 1.76994 1.21741 0.97702 0.83354 1.02052 1.20108 0.91447 0.87002 0.90456 1.21772 1.02006 0.91026 1.07266 1.22202 0.92995 1.00118 0.89909 1.22607 0.93678 0.94514 1.07039 1.17491 0.82616 0.86745 0.77264 1.90824 1.72760 1.27022 1.50281 1.45936 1.05468 1.11026 1.71920 1.22503 0.88924 0.87059 0.98184 0.86752 1.24291 1.00406 1.00957 0.96705 1.20635 0.94811 0.85312 0.90868 0.91460 1.42117 1.45737 1.00559 1.45506 1.19292 1.13631 0.89031 1.15234 0.90932 1.24760 0.99754 0.97009 0.99256 1.69679 1.40504 1.13363 1.34148 0.86112 0.80203 0.81019 0.78799 1.20524 1.21906 1.21893 1.23547 0.95212 0.97296 0.96292 1.22637 0.98147 1.00253 0.95284 1.22734 0.98660 0.97992 0.97663 1.22551 0.99204 0.94923 0.98721 1.72966 1.30080 0.94428 1.03869 1.73140 1.03552 1.19650 1.19317 0.89729 0.91953 0.91967 0.92683 0.90026 0.91246 0.83136 0.82079 0.75747 0.90825 0.91144 0.77845 0.93490 0.91047 0.89907 0.90074 0.92261 0.91323 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 9.42 59.85 0.56 0.86 16 2 N -0.60 -4.14 3.38 -189.54 -0.64 -4.78 16 3 C 0.09 0.52 10.39 59.85 0.62 1.14 16 4 C 0.35 3.45 7.44 -154.94 -1.15 2.30 16 5 C -0.19 -1.63 9.40 -39.05 -0.37 -2.00 16 6 C -0.02 -0.26 9.71 -38.88 -0.38 -0.64 16 7 C -0.03 -0.37 6.83 -82.85 -0.57 -0.94 16 8 C 0.58 9.32 7.80 -12.32 -0.10 9.22 16 9 O -0.53 -10.29 16.02 5.32 0.09 -10.20 16 10 N -0.69 -10.63 5.28 -54.31 -0.29 -10.92 16 11 C 0.14 2.41 4.01 -67.49 -0.27 2.14 16 12 H 0.11 2.36 7.54 -51.93 -0.39 1.96 16 13 C -0.18 -3.35 7.68 -25.75 -0.20 -3.55 16 14 C 0.20 3.92 4.35 -67.48 -0.29 3.63 16 15 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 16 N -0.70 -17.40 4.91 -52.98 -0.26 -17.66 16 17 C -0.24 -6.63 9.98 -15.06 -0.15 -6.79 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 21 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C -0.12 -2.01 0.91 -154.72 -0.14 -2.15 16 26 C -0.13 -2.08 7.60 -26.28 -0.20 -2.28 16 27 C -0.13 -1.89 8.08 -25.75 -0.21 -2.10 16 28 C -0.12 -1.58 7.16 -26.28 -0.19 -1.76 16 29 N -0.17 -2.25 10.73 33.32 0.36 -1.90 16 30 N -0.30 -3.74 10.34 31.21 0.32 -3.42 16 31 H 0.08 0.12 7.79 -51.93 -0.40 -0.29 16 32 H 0.06 0.16 7.77 -51.93 -0.40 -0.24 16 33 H 0.06 0.18 8.11 -51.93 -0.42 -0.24 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.57 7.46 -51.93 -0.39 0.18 16 36 H 0.07 0.21 7.92 -51.93 -0.41 -0.20 16 37 H 0.15 0.79 6.81 -52.49 -0.36 0.43 16 38 H 0.16 1.60 7.71 -52.49 -0.40 1.19 16 39 H 0.41 5.54 6.27 -40.82 -0.26 5.29 16 40 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.39 10.29 7.48 -40.82 -0.31 9.99 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.61 7.51 -51.93 -0.39 1.22 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.08 0.96 6.96 -51.93 -0.36 0.60 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -33.48 401.45 -9.21 -42.69 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -7.42 Total: 13.38 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.12 Total: -3.33 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: 0.22 Total: -66.04 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.48 -9.21 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078786344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.307 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds