Wall clock time and date at job start Wed Apr 1 2020 03:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99771 * 2 1 4 4 C 1.52999 * 109.47067 * 86.77523 * 3 2 1 5 5 H 1.09007 * 112.73956 * 313.72022 * 4 3 2 6 6 C 1.53608 * 113.50885 * 84.49830 * 4 3 2 7 7 C 1.53492 * 83.30706 * 140.81595 * 6 4 3 8 8 N 1.47069 * 88.05061 * 333.98019 * 7 6 4 9 9 C 1.36933 * 136.06347 * 207.12895 * 8 7 6 10 10 H 1.07997 * 120.00815 * 173.13303 * 9 8 7 11 11 C 1.38818 * 119.99532 * 353.13157 * 9 8 7 12 12 N 1.31619 * 120.00337 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99739 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47135 * 60.00065 * 13 11 9 15 15 H 1.48503 * 109.46824 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47299 * 299.99716 * 13 11 9 17 17 C 1.34773 * 119.99981 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99887 * 184.80077 * 17 2 1 19 19 C 1.50692 * 120.00254 * 4.79544 * 17 2 1 20 20 H 1.09000 * 109.88273 * 10.58965 * 19 17 2 21 21 C 1.54315 * 109.89291 * 249.39036 * 19 17 2 22 22 C 1.55142 * 103.02059 * 218.31041 * 21 19 17 23 23 C 1.54909 * 101.65342 * 35.65053 * 22 21 19 24 24 N 1.47445 * 109.88750 * 131.61999 * 19 17 2 25 25 C 1.38403 * 111.00083 * 356.14841 * 24 19 17 26 26 N 1.32494 * 119.21728 * 290.91469 * 25 24 19 27 27 C 1.32277 * 120.73753 * 179.71543 * 26 25 24 28 28 C 1.38607 * 119.19652 * 0.54622 * 27 26 25 29 29 C 1.38604 * 118.55848 * 359.72869 * 28 27 26 30 30 N 1.32269 * 119.19592 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47095 * 95.46439 * 1 2 3 32 32 H 1.08999 * 109.47508 * 215.46002 * 1 2 3 33 33 H 1.08997 * 109.47441 * 335.46257 * 1 2 3 34 34 H 1.08997 * 109.47186 * 326.77147 * 3 2 1 35 35 H 1.08998 * 109.46621 * 206.77399 * 3 2 1 36 36 H 1.09000 * 114.20578 * 27.24468 * 6 4 3 37 37 H 1.09001 * 114.23719 * 254.38799 * 6 4 3 38 38 H 1.08998 * 113.47253 * 219.17023 * 7 6 4 39 39 H 1.08997 * 113.47223 * 88.78782 * 7 6 4 40 40 H 0.96998 * 120.00268 * 179.97438 * 12 11 9 41 41 H 1.09000 * 110.70631 * 336.69074 * 21 19 17 42 42 H 1.08994 * 110.70955 * 99.92676 * 21 19 17 43 43 H 1.08997 * 110.99172 * 277.56234 * 22 21 19 44 44 H 1.09001 * 110.99087 * 153.74033 * 22 21 19 45 45 H 1.08998 * 110.37727 * 204.10049 * 23 22 21 46 46 H 1.09009 * 110.46728 * 81.80936 * 23 22 21 47 47 H 1.08000 * 120.40118 * 180.25253 * 27 26 25 48 48 H 1.07998 * 120.71540 * 179.70796 * 28 27 26 49 49 H 1.07995 * 120.39802 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3822 1.7510 1.4402 5 1 1.4660 1.6857 2.0272 6 6 3.6026 1.1353 2.1408 7 6 3.7550 2.5469 2.7239 8 7 3.0492 3.0580 1.5392 9 6 3.0245 4.2333 0.8368 10 1 2.4726 4.2975 -0.0892 11 6 3.7089 5.3422 1.3152 12 7 4.3820 5.2639 2.4436 13 14 3.6747 6.9456 0.3574 14 1 2.2722 7.4168 0.2309 15 1 4.4770 7.9683 1.0755 16 1 4.2473 6.7267 -0.9951 17 6 2.1388 -1.1672 0.0005 18 8 3.3485 -1.1690 0.0884 19 6 1.3894 -2.4700 -0.1080 20 1 0.3476 -2.2781 -0.3647 21 6 1.4715 -3.2359 1.2291 22 6 1.6221 -4.7125 0.7775 23 6 2.4924 -4.5632 -0.4953 24 7 2.0111 -3.3220 -1.1383 25 6 3.0468 -2.6579 -1.7723 26 7 2.7688 -1.6345 -2.5665 27 6 3.7356 -0.9749 -3.1829 28 6 5.0502 -1.3735 -2.9983 29 6 5.3051 -2.4515 -2.1652 30 7 4.2924 -3.0644 -1.5751 31 1 -0.3633 -0.0979 -1.0230 32 1 -0.3634 -0.8370 0.5962 33 1 -0.3634 0.9348 0.4268 34 1 1.6347 2.0132 -0.5631 35 1 3.1737 1.1247 -0.4629 36 1 4.4055 0.8421 1.4644 37 1 3.3569 0.3712 2.8783 38 1 4.7907 2.8801 2.7894 39 1 3.2055 2.6943 3.6536 40 1 4.8605 6.0386 2.7776 41 1 2.3420 -2.9177 1.8027 42 1 0.5574 -3.1011 1.8073 43 1 0.6522 -5.1485 0.5382 44 1 2.1372 -5.3022 1.5358 45 1 2.3450 -5.4158 -1.1581 46 1 3.5451 -4.4687 -0.2283 47 1 3.5031 -0.1390 -3.8259 48 1 5.8584 -0.8555 -3.4933 49 1 6.3182 -2.7869 -2.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085647832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:25 Heat of formation + Delta-G solvation = 122.429233 kcal Electronic energy + Delta-G solvation = -32289.929181 eV Core-core repulsion = 28255.995560 eV Total energy + Delta-G solvation = -4033.933620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69864 -39.79792 -38.47235 -37.44016 -35.24846 -33.57476 -33.05790 -32.19191 -30.23420 -29.74858 -28.13691 -27.85366 -26.27694 -24.52520 -24.01123 -23.38506 -22.82288 -21.40217 -21.29280 -19.32609 -19.09798 -17.78092 -17.36332 -17.16558 -16.72696 -16.02143 -15.81348 -15.35316 -15.27798 -14.74255 -14.66996 -14.39307 -13.94711 -13.73576 -13.61109 -13.37576 -13.31518 -12.93010 -12.82242 -12.64280 -12.31260 -12.12114 -11.99782 -11.79387 -11.45705 -11.42340 -11.14089 -11.06009 -10.84171 -10.74450 -10.71757 -10.64251 -10.42093 -10.08119 -9.86197 -9.79470 -9.66679 -9.40536 -9.06943 -8.77559 -8.40275 -8.22434 -6.84610 -5.75725 -3.07829 1.04615 1.27413 2.58738 3.12634 3.28996 3.39141 3.43090 3.44689 3.89851 4.19027 4.35219 4.43996 4.46992 4.54623 4.70880 4.81653 4.96772 5.08642 5.13106 5.20213 5.24602 5.27117 5.31460 5.42322 5.51344 5.54975 5.60223 5.62669 5.67888 5.72580 5.75664 5.82912 5.91466 6.01715 6.02362 6.10558 6.26740 6.37455 6.41697 6.54532 6.68718 6.79081 6.80681 6.84169 7.27261 7.27580 7.47521 7.58455 7.59585 7.99238 8.24756 8.30067 9.04485 9.71710 10.68288 11.42448 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003484 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.719656 B = 8034.394425 C = 8812.832782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.596 5.596 3 C 0.122 3.878 4 C 0.131 3.869 5 H 0.038 0.962 6 C -0.153 4.153 7 C 0.157 3.843 8 N -0.600 5.600 9 C -0.219 4.219 10 H 0.078 0.922 11 C -0.005 4.005 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.510 3.490 18 O -0.529 6.529 19 C 0.067 3.933 20 H 0.113 0.887 21 C -0.129 4.129 22 C -0.125 4.125 23 C 0.041 3.959 24 N -0.446 5.446 25 C 0.503 3.497 26 N -0.524 5.524 27 C 0.174 3.826 28 C -0.252 4.252 29 C 0.176 3.824 30 N -0.533 5.533 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.254 0.746 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.164 0.836 48 H 0.142 0.858 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 -20.357 -7.029 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C -0.001 4.001 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.191 4.191 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.347 4.347 10 H 0.096 0.904 11 C -0.202 4.202 12 N -0.564 5.564 13 Si 0.740 3.260 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.296 3.704 18 O -0.405 6.405 19 C -0.044 4.044 20 H 0.130 0.870 21 C -0.168 4.168 22 C -0.163 4.163 23 C -0.086 4.086 24 N -0.168 5.168 25 C 0.148 3.852 26 N -0.241 5.241 27 C 0.006 3.994 28 C -0.275 4.275 29 C 0.009 3.991 30 N -0.251 5.251 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.181 0.819 48 H 0.160 0.840 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.208 -20.561 -6.951 22.574 hybrid contribution 0.967 1.859 -0.365 2.127 sum -5.241 -18.702 -7.315 20.754 Atomic orbital electron populations 1.21820 0.79931 1.03146 1.01759 1.47770 1.06793 1.06327 1.71961 1.21819 0.96989 0.82328 0.98996 1.22437 0.94884 0.87374 0.93035 0.94444 1.23606 0.98695 0.97085 0.99726 1.21947 0.97977 0.87342 0.89581 1.45608 1.47125 1.09501 1.30334 1.18821 1.27909 0.86165 1.01785 0.90381 1.24817 1.00590 0.97679 0.97163 1.69843 1.35949 1.29672 1.20980 0.86238 0.77478 0.83306 0.78965 1.21164 1.21551 1.21061 1.20568 0.88154 0.85415 0.76243 1.90746 1.13727 1.86425 1.49594 1.22680 1.00039 0.90378 0.91277 0.86977 1.22785 1.03872 0.94987 0.95175 1.22711 1.00654 0.95904 0.97026 1.23211 1.00962 0.89719 0.94730 1.60552 1.24578 1.04999 1.26685 1.20697 0.86918 0.87408 0.90202 1.67919 1.37707 1.08503 1.10019 1.22943 0.88358 0.95268 0.92783 1.22669 0.99365 1.00956 1.04477 1.22870 0.97901 0.89973 0.88400 1.68101 0.99752 1.34130 1.23146 0.92260 0.91645 0.90394 0.91119 0.90078 0.90232 0.93543 0.91979 0.95835 0.93611 0.89951 0.89539 0.90309 0.89811 0.89698 0.88868 0.81922 0.83994 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.64 59.85 0.58 1.43 16 2 N -0.60 -9.10 2.87 -181.58 -0.52 -9.62 16 3 C 0.12 2.28 5.31 -4.04 -0.02 2.26 16 4 C 0.13 2.78 4.31 -72.34 -0.31 2.46 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 6 C -0.15 -3.26 7.43 -26.16 -0.19 -3.45 16 7 C 0.16 3.94 7.24 -8.51 -0.06 3.87 16 8 N -0.60 -15.69 3.64 -176.81 -0.64 -16.33 16 9 C -0.22 -6.16 10.55 -15.06 -0.16 -6.32 16 10 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 11 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 12 N -0.92 -27.79 11.69 55.49 0.65 -27.14 16 13 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.51 7.98 4.62 -10.99 -0.05 7.93 16 18 O -0.53 -9.95 12.90 5.55 0.07 -9.88 16 19 C 0.07 0.83 3.19 -67.88 -0.22 0.61 16 20 H 0.11 1.21 6.03 -51.93 -0.31 0.90 16 21 C -0.13 -1.32 6.46 -24.91 -0.16 -1.48 16 22 C -0.12 -1.04 7.08 -24.59 -0.17 -1.22 16 23 C 0.04 0.44 6.46 -2.30 -0.01 0.43 16 24 N -0.45 -5.96 5.25 -165.99 -0.87 -6.83 16 25 C 0.50 7.71 4.41 -322.81 -1.42 6.28 16 26 N -0.52 -8.14 9.06 -13.93 -0.13 -8.27 16 27 C 0.17 2.35 11.30 -17.22 -0.19 2.15 16 28 C -0.25 -3.05 10.16 -39.31 -0.40 -3.45 16 29 C 0.18 2.26 11.30 -17.23 -0.19 2.07 16 30 N -0.53 -7.93 7.57 -13.93 -0.11 -8.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 6.73 -51.93 -0.35 0.22 16 33 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 35 H 0.08 1.73 7.18 -51.93 -0.37 1.36 16 36 H 0.08 1.82 7.75 -51.93 -0.40 1.41 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.70 7.44 -51.93 -0.39 1.32 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.18 6.39 -51.92 -0.33 0.85 16 47 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 48 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -35.53 389.72 -11.39 -46.92 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.59 Total: 2.77 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: -3.10 Total: 13.34 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -1.62 Total: -76.22 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.53 -11.39 -46.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085647832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.350 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds