Wall clock time and date at job start Wed Apr 1 2020 03:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99771 * 2 1 4 4 C 1.52999 * 109.47067 * 86.77523 * 3 2 1 5 5 H 1.09007 * 112.73956 * 313.72022 * 4 3 2 6 6 C 1.53608 * 113.50885 * 84.49830 * 4 3 2 7 7 C 1.53492 * 83.30706 * 140.81595 * 6 4 3 8 8 N 1.47069 * 88.05061 * 333.98019 * 7 6 4 9 9 C 1.36933 * 136.06347 * 207.12895 * 8 7 6 10 10 H 1.07997 * 120.00815 * 173.13303 * 9 8 7 11 11 C 1.38818 * 119.99532 * 353.13157 * 9 8 7 12 12 N 1.31619 * 120.00337 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99739 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47135 * 60.00065 * 13 11 9 15 15 H 1.48503 * 109.46824 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47299 * 299.99716 * 13 11 9 17 17 C 1.34773 * 119.99981 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99887 * 184.80077 * 17 2 1 19 19 C 1.50692 * 120.00254 * 4.79544 * 17 2 1 20 20 H 1.09000 * 109.88273 * 10.58965 * 19 17 2 21 21 C 1.54315 * 109.89291 * 249.39036 * 19 17 2 22 22 C 1.55142 * 103.02059 * 218.31041 * 21 19 17 23 23 C 1.54909 * 101.65342 * 35.65053 * 22 21 19 24 24 N 1.47445 * 109.88750 * 131.61999 * 19 17 2 25 25 C 1.38403 * 111.00083 * 356.14841 * 24 19 17 26 26 N 1.32494 * 119.21728 * 290.91469 * 25 24 19 27 27 C 1.32277 * 120.73753 * 179.71543 * 26 25 24 28 28 C 1.38607 * 119.19652 * 0.54622 * 27 26 25 29 29 C 1.38604 * 118.55848 * 359.72869 * 28 27 26 30 30 N 1.32269 * 119.19592 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47095 * 95.46439 * 1 2 3 32 32 H 1.08999 * 109.47508 * 215.46002 * 1 2 3 33 33 H 1.08997 * 109.47441 * 335.46257 * 1 2 3 34 34 H 1.08997 * 109.47186 * 326.77147 * 3 2 1 35 35 H 1.08998 * 109.46621 * 206.77399 * 3 2 1 36 36 H 1.09000 * 114.20578 * 27.24468 * 6 4 3 37 37 H 1.09001 * 114.23719 * 254.38799 * 6 4 3 38 38 H 1.08998 * 113.47253 * 219.17023 * 7 6 4 39 39 H 1.08997 * 113.47223 * 88.78782 * 7 6 4 40 40 H 0.96998 * 120.00268 * 179.97438 * 12 11 9 41 41 H 1.09000 * 110.70631 * 336.69074 * 21 19 17 42 42 H 1.08994 * 110.70955 * 99.92676 * 21 19 17 43 43 H 1.08997 * 110.99172 * 277.56234 * 22 21 19 44 44 H 1.09001 * 110.99087 * 153.74033 * 22 21 19 45 45 H 1.08998 * 110.37727 * 204.10049 * 23 22 21 46 46 H 1.09009 * 110.46728 * 81.80936 * 23 22 21 47 47 H 1.08000 * 120.40118 * 180.25253 * 27 26 25 48 48 H 1.07998 * 120.71540 * 179.70796 * 28 27 26 49 49 H 1.07995 * 120.39802 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3822 1.7510 1.4402 5 1 1.4660 1.6857 2.0272 6 6 3.6026 1.1353 2.1408 7 6 3.7550 2.5469 2.7239 8 7 3.0492 3.0580 1.5392 9 6 3.0245 4.2333 0.8368 10 1 2.4726 4.2975 -0.0892 11 6 3.7089 5.3422 1.3152 12 7 4.3820 5.2639 2.4436 13 14 3.6747 6.9456 0.3574 14 1 2.2722 7.4168 0.2309 15 1 4.4770 7.9683 1.0755 16 1 4.2473 6.7267 -0.9951 17 6 2.1388 -1.1672 0.0005 18 8 3.3485 -1.1690 0.0884 19 6 1.3894 -2.4700 -0.1080 20 1 0.3476 -2.2781 -0.3647 21 6 1.4715 -3.2359 1.2291 22 6 1.6221 -4.7125 0.7775 23 6 2.4924 -4.5632 -0.4953 24 7 2.0111 -3.3220 -1.1383 25 6 3.0468 -2.6579 -1.7723 26 7 2.7688 -1.6345 -2.5665 27 6 3.7356 -0.9749 -3.1829 28 6 5.0502 -1.3735 -2.9983 29 6 5.3051 -2.4515 -2.1652 30 7 4.2924 -3.0644 -1.5751 31 1 -0.3633 -0.0979 -1.0230 32 1 -0.3634 -0.8370 0.5962 33 1 -0.3634 0.9348 0.4268 34 1 1.6347 2.0132 -0.5631 35 1 3.1737 1.1247 -0.4629 36 1 4.4055 0.8421 1.4644 37 1 3.3569 0.3712 2.8783 38 1 4.7907 2.8801 2.7894 39 1 3.2055 2.6943 3.6536 40 1 4.8605 6.0386 2.7776 41 1 2.3420 -2.9177 1.8027 42 1 0.5574 -3.1011 1.8073 43 1 0.6522 -5.1485 0.5382 44 1 2.1372 -5.3022 1.5358 45 1 2.3450 -5.4158 -1.1581 46 1 3.5451 -4.4687 -0.2283 47 1 3.5031 -0.1390 -3.8259 48 1 5.8584 -0.8555 -3.4933 49 1 6.3182 -2.7869 -2.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085647832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:24 Heat of formation + Delta-G solvation = 98.886114 kcal Electronic energy + Delta-G solvation = -32290.950087 eV Core-core repulsion = 28255.995560 eV Total energy + Delta-G solvation = -4034.954527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.71402 -40.96638 -39.97155 -38.73631 -36.51139 -34.60560 -34.30639 -33.93750 -31.34896 -30.67698 -29.95219 -29.36349 -27.38244 -25.52733 -25.44927 -25.00970 -24.26332 -22.60484 -22.12192 -21.08078 -20.36089 -18.94247 -18.63096 -18.36498 -18.19333 -17.25961 -17.05990 -16.67981 -16.53477 -16.13064 -15.83913 -15.66060 -15.58772 -15.05289 -14.78401 -14.58313 -14.27605 -14.13719 -13.93264 -13.83578 -13.68424 -13.45119 -13.21527 -13.09297 -12.98469 -12.70143 -12.66170 -12.49290 -12.31584 -12.16675 -11.99731 -11.87020 -11.72933 -11.70504 -11.59224 -11.22521 -11.06095 -10.87917 -10.78944 -10.11714 -9.62722 -9.36461 -8.93655 -7.92749 -5.26689 0.04613 0.25916 1.43665 1.47367 1.48383 1.53698 1.93243 2.31119 2.46983 2.91955 3.20786 3.29341 3.38904 3.47860 3.57933 3.70208 3.81407 3.81568 3.92511 4.12047 4.18469 4.26225 4.28921 4.30163 4.31588 4.36389 4.37027 4.56326 4.60173 4.75770 4.78783 4.82097 4.84241 4.86885 4.91316 4.95292 4.97340 5.01042 5.05615 5.16031 5.23432 5.38678 5.41857 5.47949 5.50859 5.66637 5.80747 5.88547 6.27273 6.39882 6.86851 7.12481 7.22128 7.57726 8.59276 9.26068 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003484 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.719656 B = 8034.394425 C = 8812.832782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.598 5.598 3 C 0.143 3.857 4 C 0.140 3.860 5 H 0.052 0.948 6 C -0.125 4.125 7 C 0.155 3.845 8 N -0.626 5.626 9 C -0.226 4.226 10 H 0.088 0.912 11 C -0.068 4.068 12 N -0.956 5.956 13 Si 0.980 3.020 14 H -0.273 1.273 15 H -0.296 1.296 16 H -0.275 1.275 17 C 0.507 3.493 18 O -0.566 6.566 19 C 0.068 3.932 20 H 0.134 0.866 21 C -0.127 4.127 22 C -0.111 4.111 23 C 0.036 3.964 24 N -0.451 5.451 25 C 0.487 3.513 26 N -0.546 5.546 27 C 0.154 3.846 28 C -0.250 4.250 29 C 0.160 3.840 30 N -0.549 5.549 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.020 0.980 40 H 0.248 0.752 41 H 0.055 0.945 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.182 0.818 48 H 0.170 0.830 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -21.662 -7.769 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.329 5.329 3 C 0.018 3.982 4 C 0.033 3.967 5 H 0.070 0.930 6 C -0.163 4.163 7 C 0.029 3.971 8 N -0.353 5.353 9 C -0.354 4.354 10 H 0.106 0.894 11 C -0.261 4.261 12 N -0.605 5.605 13 Si 0.807 3.193 14 H -0.199 1.199 15 H -0.222 1.222 16 H -0.201 1.201 17 C 0.294 3.706 18 O -0.444 6.444 19 C -0.042 4.042 20 H 0.152 0.848 21 C -0.165 4.165 22 C -0.149 4.149 23 C -0.090 4.090 24 N -0.174 5.174 25 C 0.132 3.868 26 N -0.264 5.264 27 C -0.013 4.013 28 C -0.273 4.273 29 C -0.007 4.007 30 N -0.268 5.268 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.135 0.865 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.199 0.801 48 H 0.188 0.812 49 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.342 -21.908 -7.715 24.680 hybrid contribution 1.653 2.197 -0.157 2.754 sum -6.689 -19.711 -7.873 22.254 Atomic orbital electron populations 1.22099 0.77138 1.04616 1.03296 1.47815 1.08405 1.04875 1.71852 1.21262 0.96089 0.84141 0.96680 1.22489 0.94780 0.84668 0.94798 0.93048 1.23289 0.98248 0.95473 0.99285 1.21896 0.95925 0.89618 0.89680 1.45903 1.48331 1.10551 1.30475 1.19260 1.27061 0.86869 1.02222 0.89386 1.25703 1.00748 1.01223 0.98381 1.70043 1.37320 1.30192 1.22919 0.85138 0.77770 0.78733 0.77632 1.19878 1.22227 1.20105 1.21198 0.87935 0.86359 0.75088 1.90726 1.15590 1.87058 1.51050 1.22845 1.00223 0.88628 0.92467 0.84842 1.22825 1.04160 0.95632 0.93911 1.22724 1.01411 0.95001 0.95776 1.23293 1.00303 0.89208 0.96207 1.60694 1.24254 1.05503 1.26928 1.20987 0.87546 0.87725 0.90588 1.67916 1.38586 1.09107 1.10769 1.23415 0.88923 0.95808 0.93112 1.22997 0.99728 1.00580 1.03947 1.23462 0.98823 0.90192 0.88230 1.68154 1.00145 1.34782 1.23680 0.91023 0.88559 0.90262 0.91135 0.93201 0.91999 0.91193 0.95429 0.96270 0.94318 0.92601 0.86509 0.87905 0.88381 0.88681 0.91129 0.80110 0.81219 0.79499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 9.64 127.77 1.23 2.59 16 2 N -0.60 -17.30 2.87 -846.77 -2.43 -19.74 16 3 C 0.14 5.30 5.31 86.38 0.46 5.76 16 4 C 0.14 5.86 4.31 41.82 0.18 6.04 16 5 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 6 C -0.12 -5.35 7.43 30.96 0.23 -5.12 16 7 C 0.15 7.96 7.24 83.17 0.60 8.57 16 8 N -0.63 -33.17 3.64 -713.30 -2.60 -35.77 16 9 C -0.23 -12.79 10.55 84.04 0.89 -11.90 16 10 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 11 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 12 N -0.96 -59.50 11.69 21.65 0.25 -59.25 16 13 Si 0.98 46.06 29.55 68.60 2.03 48.08 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.51 15.28 4.62 87.66 0.41 15.68 16 18 O -0.57 -21.36 12.90 -3.04 -0.04 -21.40 16 19 C 0.07 1.54 3.19 44.51 0.14 1.69 16 20 H 0.13 2.39 6.03 -2.39 -0.01 2.38 16 21 C -0.13 -2.22 6.46 31.77 0.21 -2.01 16 22 C -0.11 -1.52 7.08 31.98 0.23 -1.29 16 23 C 0.04 0.75 6.46 86.77 0.56 1.31 16 24 N -0.45 -11.45 5.25 -679.09 -3.56 -15.01 16 25 C 0.49 14.76 4.41 261.49 1.15 15.91 16 26 N -0.55 -16.80 9.06 -197.99 -1.79 -18.59 16 27 C 0.15 4.13 11.30 84.71 0.96 5.09 16 28 C -0.25 -5.94 10.16 22.45 0.23 -5.71 16 29 C 0.16 4.07 11.30 84.71 0.96 5.03 16 30 N -0.55 -16.38 7.57 -198.00 -1.50 -17.88 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.28 6.73 -2.39 -0.02 1.26 16 33 H 0.08 1.53 8.03 -2.39 -0.02 1.51 16 34 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 35 H 0.05 2.17 7.18 -2.39 -0.02 2.15 16 36 H 0.06 2.89 7.75 -2.39 -0.02 2.88 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.03 1.58 7.44 -2.39 -0.02 1.56 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.06 1.30 7.79 -2.39 -0.02 1.28 16 42 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.07 1.78 6.39 -2.38 -0.02 1.77 16 47 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 48 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 49 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -79.88 389.72 0.19 -79.69 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.95 Total: 21.72 kcal Atomic # 6 Polarization: 29.27 SS G_CDS: 8.89 Total: 38.16 kcal Atomic # 7 Polarization: -154.61 SS G_CDS: -11.63 Total: -166.24 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.04 Total: -21.40 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.88 0.19 -79.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085647832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.572 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds