Wall clock time and date at job start Wed Apr 1 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00378 * 2 1 4 4 C 1.52997 * 109.46811 * 272.03341 * 3 2 1 5 5 H 1.09000 * 112.78359 * 43.15702 * 4 3 2 6 6 C 1.53247 * 113.38290 * 272.45244 * 4 3 2 7 7 C 1.53495 * 83.43035 * 219.29285 * 6 4 3 8 8 N 1.47063 * 113.46947 * 173.94576 * 4 3 2 9 9 C 1.36939 * 136.05710 * 321.93737 * 8 4 3 10 10 H 1.08010 * 119.99732 * 356.15348 * 9 8 4 11 11 C 1.38810 * 120.00463 * 176.16075 * 9 8 4 12 12 N 1.31615 * 119.99622 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00166 * 180.27496 * 11 9 8 14 14 H 1.48500 * 109.47188 * 179.72105 * 13 11 9 15 15 H 1.48503 * 109.46760 * 299.72004 * 13 11 9 16 16 H 1.48504 * 109.47236 * 59.71814 * 13 11 9 17 17 C 1.34780 * 119.99667 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99876 * 179.97438 * 17 2 1 19 19 C 1.50698 * 120.00002 * 0.02562 * 17 2 1 20 20 H 1.08997 * 110.33533 * 320.78958 * 19 17 2 21 21 C 1.54906 * 110.37799 * 83.16947 * 19 17 2 22 22 C 1.55142 * 101.65271 * 155.89640 * 21 19 17 23 23 C 1.54315 * 103.02113 * 324.34715 * 22 21 19 24 24 N 1.47438 * 107.23297 * 22.28455 * 23 22 21 25 25 C 1.38403 * 111.00420 * 123.26181 * 24 23 22 26 26 N 1.32495 * 119.21701 * 238.89074 * 25 24 23 27 27 C 1.32273 * 120.74172 * 179.71303 * 26 25 24 28 28 C 1.38604 * 119.19570 * 0.54074 * 27 26 25 29 29 C 1.38609 * 118.55796 * 359.72831 * 28 27 26 30 30 N 1.32268 * 119.19571 * 0.02562 * 29 28 27 31 31 H 1.09002 * 109.47041 * 95.33395 * 1 2 3 32 32 H 1.08999 * 109.47807 * 215.33434 * 1 2 3 33 33 H 1.09005 * 109.47366 * 335.33348 * 1 2 3 34 34 H 1.08991 * 109.47208 * 152.03157 * 3 2 1 35 35 H 1.08996 * 109.46834 * 32.02568 * 3 2 1 36 36 H 1.08999 * 114.32420 * 105.65758 * 6 4 3 37 37 H 1.08996 * 114.01638 * 332.90895 * 6 4 3 38 38 H 1.09004 * 113.46949 * 271.11545 * 7 6 4 39 39 H 1.08998 * 113.51618 * 140.68591 * 7 6 4 40 40 H 0.97000 * 120.00052 * 180.02562 * 12 11 9 41 41 H 1.08999 * 110.99113 * 273.98901 * 21 19 17 42 42 H 1.09000 * 110.98707 * 37.80637 * 21 19 17 43 43 H 1.09003 * 110.70316 * 205.96108 * 22 21 19 44 44 H 1.09002 * 110.85397 * 82.80159 * 22 21 19 45 45 H 1.08999 * 109.88554 * 262.87621 * 23 22 21 46 46 H 1.09002 * 110.02353 * 141.76916 * 23 22 21 47 47 H 1.08001 * 120.40586 * 180.29793 * 27 26 25 48 48 H 1.07999 * 120.72339 * 179.75787 * 28 27 26 49 49 H 1.08005 * 120.39884 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4082 1.7358 -1.4416 5 1 1.5183 1.6140 -2.0591 6 6 3.6792 1.1705 -2.0846 7 6 3.7879 2.5775 -2.6884 8 7 3.0119 3.0731 -1.5416 9 6 2.9037 4.2571 -0.8621 10 1 2.1863 4.3562 -0.0608 11 6 3.7158 5.3299 -1.2032 12 7 4.5902 5.2090 -2.1795 13 14 3.5736 6.9425 -0.2712 14 1 4.5480 7.9193 -0.8204 15 1 2.1971 7.4799 -0.4192 16 1 3.8624 6.7103 1.1668 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1673 0.0001 19 6 1.3852 -2.4723 0.0005 20 1 0.5098 -2.4042 0.6463 21 6 0.9665 -2.8534 -1.4414 22 6 0.8148 -4.3931 -1.3270 23 6 1.9362 -4.7807 -0.3403 24 7 2.2656 -3.5750 0.4419 25 6 2.1244 -3.8099 1.7985 26 7 1.2793 -3.0677 2.4988 27 6 1.1165 -3.2698 3.7958 28 6 1.8509 -4.2643 4.4225 29 6 2.7300 -5.0184 3.6611 30 7 2.8415 -4.7679 2.3672 31 1 -0.3633 -0.0955 -1.0232 32 1 -0.3635 -0.8383 0.5943 33 1 -0.3634 0.9339 0.4289 34 1 3.1652 1.1295 0.4819 35 1 1.6247 2.0189 0.5450 36 1 3.4999 0.3827 -2.8163 37 1 4.4670 0.9280 -1.3714 38 1 3.2692 2.6822 -3.6413 39 1 4.8082 2.9596 -2.7198 40 1 5.1580 5.9585 -2.4176 41 1 0.0187 -2.3864 -1.7090 42 1 1.7456 -2.5898 -2.1567 43 1 0.9719 -4.8688 -2.2951 44 1 -0.1624 -4.6578 -0.9232 45 1 2.8146 -5.1171 -0.8909 46 1 1.5907 -5.5716 0.3254 47 1 0.4226 -2.6647 4.3605 48 1 1.7403 -4.4479 5.4811 49 1 3.3167 -5.8012 4.1189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085647833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:28 Heat of formation + Delta-G solvation = 117.030126 kcal Electronic energy + Delta-G solvation = -31212.897861 eV Core-core repulsion = 27178.730118 eV Total energy + Delta-G solvation = -4034.167743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64935 -39.98474 -38.51249 -37.47375 -35.06507 -33.99798 -33.29027 -32.13040 -30.25042 -30.03908 -28.08009 -27.78960 -26.19190 -24.82453 -24.31714 -23.31921 -22.84121 -21.51571 -21.34279 -19.11854 -18.97340 -18.17126 -17.53947 -17.25695 -16.61703 -16.14831 -15.79037 -15.34561 -15.26259 -15.02693 -14.72149 -14.45309 -13.96927 -13.82983 -13.77583 -13.52905 -13.38508 -13.12853 -12.77110 -12.59039 -12.49222 -12.02849 -11.89217 -11.78254 -11.60213 -11.40829 -11.36432 -11.10771 -10.99061 -10.92807 -10.74909 -10.66745 -10.40662 -10.34232 -9.75910 -9.68800 -9.47056 -9.42983 -9.28257 -8.70378 -8.54671 -8.14348 -6.78367 -5.68100 -3.01379 0.70616 0.87341 2.69747 2.96464 3.40041 3.43327 3.47146 3.48649 3.50407 3.81009 4.23207 4.31721 4.36461 4.50216 4.55562 4.62581 4.78241 4.85446 4.90342 5.00043 5.11413 5.26496 5.30649 5.37443 5.41110 5.46215 5.51073 5.52746 5.60002 5.64955 5.73015 5.77509 5.87583 5.96584 5.98842 6.12411 6.16831 6.23665 6.49830 6.52556 6.65746 6.79225 6.89778 6.94263 6.99875 7.35278 7.58394 7.69920 7.72968 7.90454 8.07850 8.56878 9.10625 9.78123 10.74598 11.48626 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.002768 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.736009 B =10114.881421 C =10925.682539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.118 3.882 4 C 0.132 3.868 5 H 0.040 0.960 6 C -0.154 4.154 7 C 0.148 3.852 8 N -0.601 5.601 9 C -0.217 4.217 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.911 3.089 14 H -0.290 1.290 15 H -0.286 1.286 16 H -0.284 1.284 17 C 0.525 3.475 18 O -0.513 6.513 19 C 0.058 3.942 20 H 0.114 0.886 21 C -0.118 4.118 22 C -0.140 4.140 23 C 0.063 3.937 24 N -0.431 5.431 25 C 0.497 3.503 26 N -0.555 5.555 27 C 0.176 3.824 28 C -0.266 4.266 29 C 0.174 3.826 30 N -0.527 5.527 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.253 0.747 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.168 0.832 48 H 0.146 0.854 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 -24.238 8.512 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C -0.005 4.005 4 C 0.024 3.976 5 H 0.057 0.943 6 C -0.192 4.192 7 C 0.022 3.978 8 N -0.327 5.327 9 C -0.345 4.345 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.213 1.213 16 H -0.211 1.211 17 C 0.311 3.689 18 O -0.387 6.387 19 C -0.053 4.053 20 H 0.131 0.869 21 C -0.157 4.157 22 C -0.178 4.178 23 C -0.062 4.062 24 N -0.150 5.150 25 C 0.141 3.859 26 N -0.275 5.275 27 C 0.009 3.991 28 C -0.290 4.290 29 C 0.006 3.994 30 N -0.245 5.245 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.037 0.963 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.085 0.915 47 H 0.185 0.815 48 H 0.164 0.836 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.226 -23.542 7.438 27.122 hybrid contribution -0.918 0.827 1.631 2.046 sum -12.144 -22.715 9.070 27.308 Atomic orbital electron populations 1.21815 0.80293 1.03003 1.01424 1.47798 1.06583 1.06319 1.73686 1.21902 0.97296 0.82202 0.99087 1.22379 0.95119 0.86831 0.93256 0.94284 1.23563 0.98493 0.97131 1.00026 1.22106 0.98070 0.88044 0.89541 1.45565 1.47777 1.06489 1.32911 1.18822 1.16666 0.87260 1.11717 0.90432 1.24780 0.98608 0.98192 0.98831 1.69828 1.24901 1.30911 1.30867 0.86223 0.77134 0.83315 0.79212 1.21583 1.21274 1.21093 1.19934 0.87922 0.84265 0.76815 1.90719 1.13476 1.86690 1.47796 1.22697 0.95118 0.89416 0.98028 0.86904 1.22713 1.03047 0.95407 0.94526 1.22841 0.98541 0.96001 1.00432 1.22820 0.99223 0.89082 0.95100 1.59409 1.50265 1.06801 0.98522 1.21084 0.86123 0.86630 0.92074 1.68227 1.19891 1.29989 1.09386 1.23058 0.94152 0.92473 0.89456 1.22719 1.02596 1.00697 1.02986 1.23117 0.92522 0.95472 0.88280 1.68031 1.23619 1.19907 1.12980 0.92765 0.91556 0.90804 0.89768 0.91058 0.93398 0.90075 0.96252 0.90850 0.93672 0.89153 0.89328 0.89282 0.90829 0.88632 0.91509 0.81510 0.83599 0.81342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.15 59.85 0.61 1.48 16 2 N -0.61 -9.60 2.87 -181.58 -0.52 -10.12 16 3 C 0.12 2.30 5.41 -4.04 -0.02 2.28 16 4 C 0.13 2.87 4.31 -72.52 -0.31 2.56 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.15 -3.38 7.65 -26.35 -0.20 -3.58 16 7 C 0.15 3.76 7.49 -8.50 -0.06 3.70 16 8 N -0.60 -16.03 3.65 -177.14 -0.65 -16.67 16 9 C -0.22 -6.20 10.55 -15.06 -0.16 -6.36 16 10 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.18 11.44 55.49 0.63 -27.54 16 13 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.53 8.80 6.96 -10.99 -0.08 8.72 16 18 O -0.51 -10.92 15.78 5.55 0.09 -10.83 16 19 C 0.06 0.74 1.67 -67.34 -0.11 0.63 16 20 H 0.11 1.33 4.77 -51.93 -0.25 1.08 16 21 C -0.12 -1.15 6.41 -24.59 -0.16 -1.31 16 22 C -0.14 -1.06 6.94 -24.91 -0.17 -1.23 16 23 C 0.06 0.64 6.65 -2.84 -0.02 0.62 16 24 N -0.43 -5.93 4.49 -166.02 -0.75 -6.68 16 25 C 0.50 6.78 6.88 -322.81 -2.22 4.56 16 26 N -0.56 -6.88 8.17 -13.93 -0.11 -7.00 16 27 C 0.18 1.59 11.30 -17.23 -0.19 1.40 16 28 C -0.27 -2.00 10.16 -39.31 -0.40 -2.39 16 29 C 0.17 1.56 11.30 -17.23 -0.19 1.36 16 30 N -0.53 -6.71 9.91 -13.93 -0.14 -6.84 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.61 6.18 -51.93 -0.32 0.29 16 33 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 34 H 0.08 1.88 7.06 -51.93 -0.37 1.51 16 35 H 0.07 1.36 7.89 -51.93 -0.41 0.95 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.92 7.91 -51.93 -0.41 1.51 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 2.06 6.97 -51.93 -0.36 1.70 16 40 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.64 7.36 -51.93 -0.38 0.26 16 47 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 48 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 49 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -37.72 396.02 -11.82 -49.53 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.52 Total: 0.50 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: -3.80 Total: 12.12 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.53 Total: -74.85 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.72 -11.82 -49.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085647833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.564 kcal (2) G-P(sol) polarization free energy of solvation -37.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds