Wall clock time and date at job start Wed Apr 1 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00378 * 2 1 4 4 C 1.52997 * 109.46811 * 272.03341 * 3 2 1 5 5 H 1.09000 * 112.78359 * 43.15702 * 4 3 2 6 6 C 1.53247 * 113.38290 * 272.45244 * 4 3 2 7 7 C 1.53495 * 83.43035 * 219.29285 * 6 4 3 8 8 N 1.47063 * 113.46947 * 173.94576 * 4 3 2 9 9 C 1.36939 * 136.05710 * 321.93737 * 8 4 3 10 10 H 1.08010 * 119.99732 * 356.15348 * 9 8 4 11 11 C 1.38810 * 120.00463 * 176.16075 * 9 8 4 12 12 N 1.31615 * 119.99622 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00166 * 180.27496 * 11 9 8 14 14 H 1.48500 * 109.47188 * 179.72105 * 13 11 9 15 15 H 1.48503 * 109.46760 * 299.72004 * 13 11 9 16 16 H 1.48504 * 109.47236 * 59.71814 * 13 11 9 17 17 C 1.34780 * 119.99667 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99876 * 179.97438 * 17 2 1 19 19 C 1.50698 * 120.00002 * 0.02562 * 17 2 1 20 20 H 1.08997 * 110.33533 * 320.78958 * 19 17 2 21 21 C 1.54906 * 110.37799 * 83.16947 * 19 17 2 22 22 C 1.55142 * 101.65271 * 155.89640 * 21 19 17 23 23 C 1.54315 * 103.02113 * 324.34715 * 22 21 19 24 24 N 1.47438 * 107.23297 * 22.28455 * 23 22 21 25 25 C 1.38403 * 111.00420 * 123.26181 * 24 23 22 26 26 N 1.32495 * 119.21701 * 238.89074 * 25 24 23 27 27 C 1.32273 * 120.74172 * 179.71303 * 26 25 24 28 28 C 1.38604 * 119.19570 * 0.54074 * 27 26 25 29 29 C 1.38609 * 118.55796 * 359.72831 * 28 27 26 30 30 N 1.32268 * 119.19571 * 0.02562 * 29 28 27 31 31 H 1.09002 * 109.47041 * 95.33395 * 1 2 3 32 32 H 1.08999 * 109.47807 * 215.33434 * 1 2 3 33 33 H 1.09005 * 109.47366 * 335.33348 * 1 2 3 34 34 H 1.08991 * 109.47208 * 152.03157 * 3 2 1 35 35 H 1.08996 * 109.46834 * 32.02568 * 3 2 1 36 36 H 1.08999 * 114.32420 * 105.65758 * 6 4 3 37 37 H 1.08996 * 114.01638 * 332.90895 * 6 4 3 38 38 H 1.09004 * 113.46949 * 271.11545 * 7 6 4 39 39 H 1.08998 * 113.51618 * 140.68591 * 7 6 4 40 40 H 0.97000 * 120.00052 * 180.02562 * 12 11 9 41 41 H 1.08999 * 110.99113 * 273.98901 * 21 19 17 42 42 H 1.09000 * 110.98707 * 37.80637 * 21 19 17 43 43 H 1.09003 * 110.70316 * 205.96108 * 22 21 19 44 44 H 1.09002 * 110.85397 * 82.80159 * 22 21 19 45 45 H 1.08999 * 109.88554 * 262.87621 * 23 22 21 46 46 H 1.09002 * 110.02353 * 141.76916 * 23 22 21 47 47 H 1.08001 * 120.40586 * 180.29793 * 27 26 25 48 48 H 1.07999 * 120.72339 * 179.75787 * 28 27 26 49 49 H 1.08005 * 120.39884 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4082 1.7358 -1.4416 5 1 1.5183 1.6140 -2.0591 6 6 3.6792 1.1705 -2.0846 7 6 3.7879 2.5775 -2.6884 8 7 3.0119 3.0731 -1.5416 9 6 2.9037 4.2571 -0.8621 10 1 2.1863 4.3562 -0.0608 11 6 3.7158 5.3299 -1.2032 12 7 4.5902 5.2090 -2.1795 13 14 3.5736 6.9425 -0.2712 14 1 4.5480 7.9193 -0.8204 15 1 2.1971 7.4799 -0.4192 16 1 3.8624 6.7103 1.1668 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1673 0.0001 19 6 1.3852 -2.4723 0.0005 20 1 0.5098 -2.4042 0.6463 21 6 0.9665 -2.8534 -1.4414 22 6 0.8148 -4.3931 -1.3270 23 6 1.9362 -4.7807 -0.3403 24 7 2.2656 -3.5750 0.4419 25 6 2.1244 -3.8099 1.7985 26 7 1.2793 -3.0677 2.4988 27 6 1.1165 -3.2698 3.7958 28 6 1.8509 -4.2643 4.4225 29 6 2.7300 -5.0184 3.6611 30 7 2.8415 -4.7679 2.3672 31 1 -0.3633 -0.0955 -1.0232 32 1 -0.3635 -0.8383 0.5943 33 1 -0.3634 0.9339 0.4289 34 1 3.1652 1.1295 0.4819 35 1 1.6247 2.0189 0.5450 36 1 3.4999 0.3827 -2.8163 37 1 4.4670 0.9280 -1.3714 38 1 3.2692 2.6822 -3.6413 39 1 4.8082 2.9596 -2.7198 40 1 5.1580 5.9585 -2.4176 41 1 0.0187 -2.3864 -1.7090 42 1 1.7456 -2.5898 -2.1567 43 1 0.9719 -4.8688 -2.2951 44 1 -0.1624 -4.6578 -0.9232 45 1 2.8146 -5.1171 -0.8909 46 1 1.5907 -5.5716 0.3254 47 1 0.4226 -2.6647 4.3605 48 1 1.7403 -4.4479 5.4811 49 1 3.3167 -5.8012 4.1189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085647833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:27 Heat of formation + Delta-G solvation = 92.337048 kcal Electronic energy + Delta-G solvation = -31213.968633 eV Core-core repulsion = 27178.730118 eV Total energy + Delta-G solvation = -4035.238515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45518 -41.12885 -39.95196 -38.85700 -36.42328 -34.75404 -34.28517 -33.99106 -31.35115 -30.76025 -29.93529 -29.33398 -27.32630 -25.51856 -25.43842 -25.15432 -24.22537 -22.65722 -22.12745 -21.02793 -20.14108 -19.04912 -18.77437 -18.36802 -18.12920 -17.26000 -16.93030 -16.68209 -16.43026 -16.15672 -15.81452 -15.68072 -15.41993 -15.25024 -14.81603 -14.58332 -14.34763 -14.16848 -14.03082 -13.76574 -13.67269 -13.45804 -13.26988 -13.06014 -12.95273 -12.72975 -12.63168 -12.49609 -12.32594 -12.25741 -12.05188 -11.88310 -11.80073 -11.68954 -11.65856 -11.21154 -11.14839 -10.83629 -10.59786 -10.18866 -9.57148 -9.36630 -8.90905 -7.88161 -5.23394 -0.00655 0.18975 1.44182 1.49109 1.54739 1.65135 1.80858 2.34741 2.50342 2.76858 3.09698 3.30795 3.38114 3.46347 3.56314 3.76419 3.81693 3.87311 3.95064 3.98561 4.09644 4.21231 4.29676 4.34611 4.38359 4.41508 4.42529 4.43329 4.62090 4.67339 4.75465 4.79292 4.84304 4.85838 4.87829 4.95962 5.00792 5.03712 5.06170 5.20948 5.22228 5.31566 5.43429 5.49606 5.54259 5.72930 5.75489 5.94120 6.26215 6.50001 6.89770 7.13685 7.30863 7.60920 8.62501 9.29153 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.002768 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.736009 B =10114.881421 C =10925.682539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.607 5.607 3 C 0.134 3.866 4 C 0.142 3.858 5 H 0.061 0.939 6 C -0.131 4.131 7 C 0.145 3.855 8 N -0.629 5.629 9 C -0.225 4.225 10 H 0.090 0.910 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.982 3.018 14 H -0.297 1.297 15 H -0.272 1.272 16 H -0.277 1.277 17 C 0.520 3.480 18 O -0.570 6.570 19 C 0.069 3.931 20 H 0.126 0.874 21 C -0.117 4.117 22 C -0.125 4.125 23 C 0.061 3.939 24 N -0.462 5.462 25 C 0.472 3.528 26 N -0.576 5.576 27 C 0.160 3.840 28 C -0.250 4.250 29 C 0.159 3.841 30 N -0.559 5.559 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.037 0.963 40 H 0.247 0.753 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.198 0.802 48 H 0.185 0.815 49 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.887 -25.596 10.018 31.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C 0.009 3.991 4 C 0.035 3.965 5 H 0.078 0.922 6 C -0.170 4.170 7 C 0.020 3.980 8 N -0.355 5.355 9 C -0.353 4.353 10 H 0.108 0.892 11 C -0.264 4.264 12 N -0.606 5.606 13 Si 0.809 3.191 14 H -0.223 1.223 15 H -0.198 1.198 16 H -0.203 1.203 17 C 0.308 3.692 18 O -0.448 6.448 19 C -0.042 4.042 20 H 0.143 0.857 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.064 4.064 24 N -0.182 5.182 25 C 0.116 3.884 26 N -0.297 5.297 27 C -0.006 4.006 28 C -0.273 4.273 29 C -0.007 4.007 30 N -0.278 5.278 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.215 0.785 48 H 0.202 0.798 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.553 -24.948 8.976 30.244 hybrid contribution 0.108 1.150 1.267 1.714 sum -14.445 -23.798 10.243 29.663 Atomic orbital electron populations 1.22134 0.77001 1.04476 1.03417 1.47836 1.08449 1.04663 1.73050 1.21407 0.96341 0.84236 0.97110 1.22441 0.95153 0.84066 0.94840 0.92195 1.23282 0.98185 0.95917 0.99585 1.22060 0.96146 0.89932 0.89912 1.45877 1.48716 1.07687 1.33221 1.19294 1.16287 0.87935 1.11737 0.89233 1.25706 0.98678 1.01946 1.00116 1.70045 1.26114 1.31554 1.32839 0.85105 0.77370 0.78680 0.77899 1.22294 1.19759 1.20267 1.20781 0.87546 0.85674 0.75231 1.90690 1.16133 1.87574 1.50397 1.22650 0.94385 0.87043 1.00112 0.85673 1.22782 1.03565 0.97166 0.91978 1.22824 0.98427 0.94278 1.00738 1.22887 0.99909 0.88274 0.95325 1.59396 1.51354 1.08032 0.99422 1.21201 0.87265 0.87695 0.92230 1.68194 1.20312 1.30228 1.10916 1.23723 0.94832 0.93237 0.88793 1.23126 1.00624 0.98940 1.04570 1.23779 0.93095 0.96368 0.87433 1.68020 1.24348 1.20542 1.14919 0.90602 0.89172 0.90158 0.93440 0.90558 0.90805 0.92399 0.95923 0.94450 0.94399 0.86353 0.91280 0.87353 0.88819 0.89540 0.91345 0.78497 0.79757 0.78326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 10.15 127.77 1.30 2.67 16 2 N -0.61 -18.44 2.87 -846.78 -2.43 -20.88 16 3 C 0.13 5.21 5.41 86.38 0.47 5.68 16 4 C 0.14 6.12 4.31 41.71 0.18 6.29 16 5 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 6 C -0.13 -5.90 7.65 30.84 0.24 -5.66 16 7 C 0.15 7.63 7.49 83.18 0.62 8.25 16 8 N -0.63 -34.00 3.65 -714.34 -2.61 -36.61 16 9 C -0.22 -12.92 10.55 84.03 0.89 -12.03 16 10 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 11 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 12 N -0.96 -60.59 11.44 21.65 0.25 -60.34 16 13 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 14 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 C 0.52 17.36 6.96 87.66 0.61 17.97 16 18 O -0.57 -25.25 15.78 -3.05 -0.05 -25.30 16 19 C 0.07 1.67 1.67 44.64 0.07 1.74 16 20 H 0.13 2.67 4.77 -2.39 -0.01 2.66 16 21 C -0.12 -2.01 6.41 31.98 0.21 -1.80 16 22 C -0.12 -1.57 6.94 31.77 0.22 -1.35 16 23 C 0.06 1.20 6.65 86.65 0.58 1.77 16 24 N -0.46 -12.71 4.49 -679.18 -3.05 -15.76 16 25 C 0.47 12.77 6.88 261.49 1.80 14.57 16 26 N -0.58 -13.61 8.17 -197.99 -1.62 -15.23 16 27 C 0.16 2.55 11.30 84.71 0.96 3.51 16 28 C -0.25 -3.07 10.16 22.45 0.23 -2.84 16 29 C 0.16 2.61 11.30 84.72 0.96 3.57 16 30 N -0.56 -14.11 9.91 -197.99 -1.96 -16.07 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.34 6.18 -2.39 -0.01 1.32 16 33 H 0.08 1.47 7.85 -2.38 -0.02 1.45 16 34 H 0.05 2.20 7.06 -2.39 -0.02 2.19 16 35 H 0.08 2.88 7.89 -2.39 -0.02 2.86 16 36 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.06 2.87 7.91 -2.39 -0.02 2.86 16 38 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 2.21 6.97 -2.39 -0.02 2.19 16 40 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.28 7.36 -2.39 -0.02 1.26 16 47 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 49 H 0.20 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -87.26 396.02 1.28 -85.98 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.95 Total: 16.67 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 9.78 Total: 38.56 kcal Atomic # 7 Polarization: -153.45 SS G_CDS: -11.43 Total: -164.88 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -87.26 1.28 -85.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085647833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.316 kcal (2) G-P(sol) polarization free energy of solvation -87.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds