Wall clock time and date at job start Wed Apr 1 2020 03:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00123 * 2 1 4 4 C 1.52998 * 109.47340 * 84.08036 * 3 2 1 5 5 H 1.09004 * 112.77987 * 316.20202 * 4 3 2 6 6 C 1.53493 * 113.46978 * 86.98479 * 4 3 2 7 7 C 1.53238 * 83.43187 * 140.67928 * 6 4 3 8 8 N 1.47061 * 88.07988 * 334.10569 * 7 6 4 9 9 C 1.36944 * 136.05503 * 207.20533 * 8 7 6 10 10 H 1.07992 * 120.00218 * 171.94890 * 9 8 7 11 11 C 1.38812 * 119.99840 * 351.94519 * 9 8 7 12 12 N 1.31628 * 119.99867 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00252 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47438 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.46977 * 300.00880 * 13 11 9 16 16 H 1.48506 * 109.46773 * 60.00124 * 13 11 9 17 17 C 1.34777 * 119.99627 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99692 * 179.97438 * 17 2 1 19 19 C 1.50702 * 119.99993 * 0.02562 * 17 2 1 20 20 H 1.09000 * 109.90681 * 319.29653 * 19 17 2 21 21 C 1.53994 * 109.91807 * 80.40401 * 19 17 2 22 22 C 1.54591 * 105.14077 * 120.57525 * 21 19 17 23 23 C 1.54941 * 102.92407 * 21.95657 * 22 21 19 24 24 N 1.47904 * 109.91209 * 198.19456 * 19 17 2 25 25 C 1.38413 * 110.99883 * 94.80576 * 24 19 17 26 26 N 1.32496 * 119.21519 * 359.72589 * 25 24 19 27 27 C 1.32275 * 120.73389 * 179.72061 * 26 25 24 28 28 C 1.38603 * 119.19942 * 0.54496 * 27 26 25 29 29 C 1.38601 * 118.55781 * 359.73007 * 28 27 26 30 30 N 1.32271 * 119.20068 * 0.02562 * 29 28 27 31 31 H 1.08997 * 109.46899 * 95.16643 * 1 2 3 32 32 H 1.08997 * 109.47490 * 215.16887 * 1 2 3 33 33 H 1.08998 * 109.47045 * 335.17148 * 1 2 3 34 34 H 1.09003 * 109.47340 * 324.07924 * 3 2 1 35 35 H 1.09006 * 109.47343 * 204.07829 * 3 2 1 36 36 H 1.09004 * 114.20274 * 254.43530 * 6 4 3 37 37 H 1.08996 * 114.20958 * 27.06027 * 6 4 3 38 38 H 1.08998 * 113.38296 * 219.28964 * 7 6 4 39 39 H 1.09006 * 113.46824 * 88.92701 * 7 6 4 40 40 H 0.97003 * 119.99424 * 179.97438 * 12 11 9 41 41 H 1.08998 * 110.30221 * 239.49268 * 21 19 17 42 42 H 1.08997 * 110.30533 * 1.55592 * 21 19 17 43 43 H 1.09003 * 110.72192 * 140.31497 * 22 21 19 44 44 H 1.09001 * 110.72729 * 263.59494 * 22 21 19 45 45 H 1.09003 * 110.66624 * 81.02044 * 23 22 21 46 46 H 1.08991 * 110.66921 * 203.98166 * 23 22 21 47 47 H 1.08002 * 120.39596 * 180.25364 * 27 26 25 48 48 H 1.07998 * 120.71757 * 179.71206 * 28 27 26 49 49 H 1.08005 * 120.39851 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3237 1.7848 1.4348 5 1 1.3958 1.6933 1.9994 6 6 3.5481 1.2325 2.1776 7 6 3.6328 2.6573 2.7351 8 7 2.9353 3.1191 1.5256 9 6 2.8830 4.2792 0.7998 10 1 2.3663 4.3002 -0.1483 11 6 3.4943 5.4281 1.2827 12 7 4.1245 5.4024 2.4380 13 14 3.4237 7.0104 0.2923 14 1 4.1478 8.0829 1.0205 15 1 4.0605 6.7945 -1.0316 16 1 2.0067 7.4114 0.1005 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3852 -2.4723 0.0005 20 1 0.5266 -2.4050 0.6685 21 6 0.9144 -2.8063 -1.4271 22 6 1.5685 -4.1669 -1.7601 23 6 1.8690 -4.7587 -0.3601 24 7 2.2772 -3.5691 0.4353 25 6 2.1465 -3.8062 1.7927 26 7 1.3004 -3.0708 2.4991 27 6 1.1477 -3.2753 3.7970 28 6 1.8937 -4.2647 4.4180 29 6 2.7734 -5.0115 3.6503 30 7 2.8747 -4.7591 2.3558 31 1 -0.3633 -0.0925 -1.0235 32 1 -0.3634 -0.8400 0.5919 33 1 -0.3633 0.9327 0.4315 34 1 1.6585 1.9995 -0.6029 35 1 3.1918 1.1142 -0.4193 36 1 3.3135 0.4721 2.9225 37 1 4.3785 0.9570 1.5276 38 1 4.6539 3.0301 2.8165 39 1 3.0571 2.8006 3.6496 40 1 4.5519 6.2052 2.7752 41 1 -0.1718 -2.8912 -1.4570 42 1 1.2528 -2.0410 -2.1257 43 1 0.8745 -4.8047 -2.3076 44 1 2.4900 -4.0241 -2.3245 45 1 0.9747 -5.2142 0.0651 46 1 2.6798 -5.4850 -0.4154 47 1 0.4535 -2.6754 4.3668 48 1 1.7919 -4.4494 5.4772 49 1 3.3696 -5.7896 4.1037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085647834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:31 Heat of formation + Delta-G solvation = 116.279732 kcal Electronic energy + Delta-G solvation = -31446.111433 eV Core-core repulsion = 27411.911150 eV Total energy + Delta-G solvation = -4034.200283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57574 -39.99767 -38.47460 -37.45091 -35.06287 -33.92978 -33.32089 -32.14020 -30.22900 -30.00554 -28.03487 -27.80098 -26.19426 -24.77292 -24.29567 -23.32899 -22.79452 -21.55908 -21.29381 -19.12182 -19.01223 -18.24467 -17.51761 -16.93388 -16.58645 -16.09665 -15.95637 -15.32777 -15.12363 -15.05720 -14.79797 -14.49549 -13.93772 -13.73670 -13.72455 -13.46745 -13.35091 -13.04136 -12.85993 -12.65917 -12.58932 -12.02232 -11.91205 -11.71891 -11.54317 -11.38266 -11.25931 -11.04766 -11.01105 -10.88987 -10.75533 -10.69826 -10.44617 -10.35869 -9.79129 -9.73555 -9.48076 -9.38038 -9.24954 -8.72223 -8.54583 -8.13912 -6.78625 -5.71088 -3.02877 0.75111 0.93700 2.72836 2.99229 3.40568 3.42870 3.47102 3.48344 3.54507 3.85667 4.22810 4.38664 4.42393 4.50603 4.54977 4.68690 4.78690 4.88066 4.94082 5.00724 5.15094 5.26512 5.31493 5.39045 5.43124 5.47562 5.50742 5.55839 5.56755 5.68101 5.70823 5.77330 5.87411 5.96266 6.00250 6.11543 6.15337 6.23529 6.49464 6.53369 6.63561 6.78622 6.86397 6.94467 7.03127 7.33296 7.55250 7.64677 7.72730 7.94968 8.04371 8.56675 9.09425 9.76594 10.74029 11.47361 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003032 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.905822 B = 9231.866642 C =10388.386806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.610 5.610 3 C 0.116 3.884 4 C 0.133 3.867 5 H 0.039 0.961 6 C -0.156 4.156 7 C 0.159 3.841 8 N -0.600 5.600 9 C -0.218 4.218 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.290 1.290 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.525 3.475 18 O -0.515 6.515 19 C 0.050 3.950 20 H 0.113 0.887 21 C -0.120 4.120 22 C -0.122 4.122 23 C 0.058 3.942 24 N -0.422 5.422 25 C 0.493 3.507 26 N -0.552 5.552 27 C 0.176 3.824 28 C -0.262 4.262 29 C 0.172 3.828 30 N -0.524 5.524 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.253 0.747 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.101 0.899 47 H 0.169 0.831 48 H 0.147 0.853 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -24.660 -1.492 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.344 5.344 3 C -0.007 4.007 4 C 0.025 3.975 5 H 0.056 0.944 6 C -0.194 4.194 7 C 0.033 3.967 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.211 1.211 16 H -0.212 1.212 17 C 0.311 3.689 18 O -0.389 6.389 19 C -0.061 4.061 20 H 0.131 0.869 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.068 4.068 24 N -0.141 5.141 25 C 0.137 3.863 26 N -0.272 5.272 27 C 0.009 3.991 28 C -0.285 4.285 29 C 0.004 3.996 30 N -0.242 5.242 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.119 0.881 47 H 0.186 0.814 48 H 0.165 0.835 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.051 -23.955 -2.704 26.118 hybrid contribution -0.933 0.878 0.987 1.617 sum -10.984 -23.077 -1.717 25.615 Atomic orbital electron populations 1.21796 0.80262 1.03385 1.01120 1.47787 1.06621 1.06286 1.73730 1.21862 0.97515 0.82301 0.98979 1.22398 0.95065 0.86935 0.93128 0.94365 1.23563 0.98801 0.97309 0.99727 1.21869 0.97727 0.87683 0.89375 1.45603 1.50594 1.08354 1.28104 1.18833 1.30676 0.85402 0.99646 0.90324 1.24831 1.01037 0.97537 0.96949 1.69855 1.39233 1.27979 1.19430 0.86230 0.77490 0.83143 0.79085 1.21602 1.21060 1.21203 1.19983 0.87927 0.84316 0.76683 1.90709 1.13512 1.86701 1.47934 1.22502 0.95350 0.89964 0.98272 0.86942 1.22389 1.00888 0.98490 0.94140 1.22553 1.01908 0.95595 0.95996 1.23275 1.00343 0.90968 0.92172 1.60781 1.48473 1.06182 0.98708 1.21100 0.86325 0.86886 0.92022 1.68248 1.20091 1.29549 1.09265 1.23081 0.94200 0.92284 0.89524 1.22741 1.02226 1.00565 1.02999 1.23115 0.92712 0.95488 0.88250 1.68020 1.23312 1.19680 1.13165 0.92944 0.91490 0.90588 0.91108 0.89468 0.93691 0.90239 0.92104 0.95819 0.93657 0.89968 0.89917 0.89791 0.89699 0.92834 0.88109 0.81425 0.83532 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.99 59.85 0.60 1.48 16 2 N -0.61 -9.62 2.87 -181.57 -0.52 -10.14 16 3 C 0.12 2.26 5.40 -4.05 -0.02 2.24 16 4 C 0.13 2.92 4.31 -72.40 -0.31 2.61 16 5 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.16 -3.50 8.00 -26.35 -0.21 -3.71 16 7 C 0.16 4.10 7.22 -8.64 -0.06 4.04 16 8 N -0.60 -16.09 3.64 -177.18 -0.65 -16.73 16 9 C -0.22 -6.23 10.55 -15.06 -0.16 -6.39 16 10 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -28.23 11.73 55.49 0.65 -27.58 16 13 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.53 8.80 6.71 -10.98 -0.07 8.72 16 18 O -0.51 -10.95 16.05 5.56 0.09 -10.86 16 19 C 0.05 0.64 1.75 -67.79 -0.12 0.53 16 20 H 0.11 1.36 4.74 -51.93 -0.25 1.12 16 21 C -0.12 -1.11 6.32 -25.38 -0.16 -1.27 16 22 C -0.12 -0.99 7.06 -24.87 -0.18 -1.16 16 23 C 0.06 0.57 6.34 -1.74 -0.01 0.56 16 24 N -0.42 -5.85 4.57 -165.01 -0.75 -6.60 16 25 C 0.49 6.93 6.99 -322.79 -2.26 4.67 16 26 N -0.55 -7.23 8.14 -13.93 -0.11 -7.34 16 27 C 0.18 1.76 11.30 -17.23 -0.19 1.57 16 28 C -0.26 -2.17 10.16 -39.31 -0.40 -2.57 16 29 C 0.17 1.64 11.30 -17.23 -0.19 1.45 16 30 N -0.52 -6.88 10.22 -13.93 -0.14 -7.03 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.65 6.19 -51.93 -0.32 0.33 16 33 H 0.08 0.88 8.03 -51.93 -0.42 0.47 16 34 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 35 H 0.09 1.91 6.98 -51.93 -0.36 1.54 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.90 7.93 -51.93 -0.41 1.49 16 38 H 0.06 1.71 7.50 -51.93 -0.39 1.32 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.47 7.99 -51.93 -0.42 0.05 16 46 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 48 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 49 H 0.17 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -37.81 397.60 -11.90 -49.71 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.58 Total: 0.58 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: -3.85 Total: 12.47 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.53 Total: -75.41 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.81 -11.90 -49.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085647834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.990 kcal (2) G-P(sol) polarization free energy of solvation -37.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds