Wall clock time and date at job start Wed Apr 1 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00123 * 2 1 4 4 C 1.52998 * 109.47340 * 84.08036 * 3 2 1 5 5 H 1.09004 * 112.77987 * 316.20202 * 4 3 2 6 6 C 1.53493 * 113.46978 * 86.98479 * 4 3 2 7 7 C 1.53238 * 83.43187 * 140.67928 * 6 4 3 8 8 N 1.47061 * 88.07988 * 334.10569 * 7 6 4 9 9 C 1.36944 * 136.05503 * 207.20533 * 8 7 6 10 10 H 1.07992 * 120.00218 * 171.94890 * 9 8 7 11 11 C 1.38812 * 119.99840 * 351.94519 * 9 8 7 12 12 N 1.31628 * 119.99867 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00252 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47438 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.46977 * 300.00880 * 13 11 9 16 16 H 1.48506 * 109.46773 * 60.00124 * 13 11 9 17 17 C 1.34777 * 119.99627 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99692 * 179.97438 * 17 2 1 19 19 C 1.50702 * 119.99993 * 0.02562 * 17 2 1 20 20 H 1.09000 * 109.90681 * 319.29653 * 19 17 2 21 21 C 1.53994 * 109.91807 * 80.40401 * 19 17 2 22 22 C 1.54591 * 105.14077 * 120.57525 * 21 19 17 23 23 C 1.54941 * 102.92407 * 21.95657 * 22 21 19 24 24 N 1.47904 * 109.91209 * 198.19456 * 19 17 2 25 25 C 1.38413 * 110.99883 * 94.80576 * 24 19 17 26 26 N 1.32496 * 119.21519 * 359.72589 * 25 24 19 27 27 C 1.32275 * 120.73389 * 179.72061 * 26 25 24 28 28 C 1.38603 * 119.19942 * 0.54496 * 27 26 25 29 29 C 1.38601 * 118.55781 * 359.73007 * 28 27 26 30 30 N 1.32271 * 119.20068 * 0.02562 * 29 28 27 31 31 H 1.08997 * 109.46899 * 95.16643 * 1 2 3 32 32 H 1.08997 * 109.47490 * 215.16887 * 1 2 3 33 33 H 1.08998 * 109.47045 * 335.17148 * 1 2 3 34 34 H 1.09003 * 109.47340 * 324.07924 * 3 2 1 35 35 H 1.09006 * 109.47343 * 204.07829 * 3 2 1 36 36 H 1.09004 * 114.20274 * 254.43530 * 6 4 3 37 37 H 1.08996 * 114.20958 * 27.06027 * 6 4 3 38 38 H 1.08998 * 113.38296 * 219.28964 * 7 6 4 39 39 H 1.09006 * 113.46824 * 88.92701 * 7 6 4 40 40 H 0.97003 * 119.99424 * 179.97438 * 12 11 9 41 41 H 1.08998 * 110.30221 * 239.49268 * 21 19 17 42 42 H 1.08997 * 110.30533 * 1.55592 * 21 19 17 43 43 H 1.09003 * 110.72192 * 140.31497 * 22 21 19 44 44 H 1.09001 * 110.72729 * 263.59494 * 22 21 19 45 45 H 1.09003 * 110.66624 * 81.02044 * 23 22 21 46 46 H 1.08991 * 110.66921 * 203.98166 * 23 22 21 47 47 H 1.08002 * 120.39596 * 180.25364 * 27 26 25 48 48 H 1.07998 * 120.71757 * 179.71206 * 28 27 26 49 49 H 1.08005 * 120.39851 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3237 1.7848 1.4348 5 1 1.3958 1.6933 1.9994 6 6 3.5481 1.2325 2.1776 7 6 3.6328 2.6573 2.7351 8 7 2.9353 3.1191 1.5256 9 6 2.8830 4.2792 0.7998 10 1 2.3663 4.3002 -0.1483 11 6 3.4943 5.4281 1.2827 12 7 4.1245 5.4024 2.4380 13 14 3.4237 7.0104 0.2923 14 1 4.1478 8.0829 1.0205 15 1 4.0605 6.7945 -1.0316 16 1 2.0067 7.4114 0.1005 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3852 -2.4723 0.0005 20 1 0.5266 -2.4050 0.6685 21 6 0.9144 -2.8063 -1.4271 22 6 1.5685 -4.1669 -1.7601 23 6 1.8690 -4.7587 -0.3601 24 7 2.2772 -3.5691 0.4353 25 6 2.1465 -3.8062 1.7927 26 7 1.3004 -3.0708 2.4991 27 6 1.1477 -3.2753 3.7970 28 6 1.8937 -4.2647 4.4180 29 6 2.7734 -5.0115 3.6503 30 7 2.8747 -4.7591 2.3558 31 1 -0.3633 -0.0925 -1.0235 32 1 -0.3634 -0.8400 0.5919 33 1 -0.3633 0.9327 0.4315 34 1 1.6585 1.9995 -0.6029 35 1 3.1918 1.1142 -0.4193 36 1 3.3135 0.4721 2.9225 37 1 4.3785 0.9570 1.5276 38 1 4.6539 3.0301 2.8165 39 1 3.0571 2.8006 3.6496 40 1 4.5519 6.2052 2.7752 41 1 -0.1718 -2.8912 -1.4570 42 1 1.2528 -2.0410 -2.1257 43 1 0.8745 -4.8047 -2.3076 44 1 2.4900 -4.0241 -2.3245 45 1 0.9747 -5.2142 0.0651 46 1 2.6798 -5.4850 -0.4154 47 1 0.4535 -2.6754 4.3668 48 1 1.7919 -4.4494 5.4772 49 1 3.3696 -5.7896 4.1037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085647834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:30 Heat of formation + Delta-G solvation = 91.566548 kcal Electronic energy + Delta-G solvation = -31447.183077 eV Core-core repulsion = 27411.911150 eV Total energy + Delta-G solvation = -4035.271927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.41792 -41.15018 -39.99239 -38.80290 -36.42748 -34.73023 -34.31357 -34.04247 -31.34237 -30.75765 -29.96093 -29.29431 -27.34877 -25.51160 -25.47170 -25.16809 -24.20999 -22.58357 -22.21167 -21.07304 -20.18616 -19.07715 -18.75906 -18.39994 -17.90534 -17.37767 -16.89985 -16.68268 -16.35801 -16.13156 -15.88840 -15.75044 -15.65237 -15.17629 -14.78002 -14.46394 -14.35821 -14.12830 -13.92273 -13.83523 -13.70538 -13.48513 -13.45194 -13.12251 -12.99232 -12.66086 -12.59093 -12.46895 -12.31046 -12.25161 -11.96440 -11.87959 -11.87525 -11.74844 -11.66076 -11.23324 -11.22026 -10.87089 -10.58665 -10.18258 -9.58130 -9.39201 -8.92947 -7.92071 -5.26318 -0.00741 0.19732 1.44382 1.49264 1.54878 1.63384 1.86891 2.34026 2.49772 2.76820 3.10248 3.27669 3.36802 3.47034 3.56498 3.75088 3.81250 3.82490 3.92419 4.01988 4.15050 4.18132 4.29768 4.32044 4.37070 4.38134 4.39128 4.48940 4.60571 4.63921 4.76327 4.77162 4.79933 4.82251 4.90433 4.92781 4.96152 5.03455 5.05637 5.15775 5.16259 5.30347 5.41748 5.45016 5.51224 5.68423 5.73344 5.88736 6.25811 6.49634 6.87304 7.13936 7.30433 7.58183 8.59929 9.27126 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003032 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.905822 B = 9231.866642 C =10388.386806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.132 3.868 4 C 0.143 3.857 5 H 0.053 0.947 6 C -0.132 4.132 7 C 0.159 3.841 8 N -0.626 5.626 9 C -0.227 4.227 10 H 0.092 0.908 11 C -0.070 4.070 12 N -0.957 5.957 13 Si 0.983 3.017 14 H -0.296 1.296 15 H -0.276 1.276 16 H -0.271 1.271 17 C 0.520 3.480 18 O -0.571 6.571 19 C 0.060 3.940 20 H 0.122 0.878 21 C -0.117 4.117 22 C -0.115 4.115 23 C 0.059 3.941 24 N -0.453 5.453 25 C 0.469 3.531 26 N -0.573 5.573 27 C 0.158 3.842 28 C -0.247 4.247 29 C 0.159 3.841 30 N -0.554 5.554 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.021 0.979 40 H 0.248 0.752 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.195 0.805 48 H 0.184 0.816 49 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 -26.078 -1.995 29.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.007 3.993 4 C 0.036 3.964 5 H 0.070 0.930 6 C -0.170 4.170 7 C 0.033 3.967 8 N -0.352 5.352 9 C -0.355 4.355 10 H 0.109 0.891 11 C -0.263 4.263 12 N -0.606 5.606 13 Si 0.810 3.190 14 H -0.223 1.223 15 H -0.202 1.202 16 H -0.196 1.196 17 C 0.308 3.692 18 O -0.449 6.449 19 C -0.051 4.051 20 H 0.139 0.861 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.066 4.066 24 N -0.173 5.173 25 C 0.113 3.887 26 N -0.294 5.294 27 C -0.007 4.007 28 C -0.270 4.270 29 C -0.007 4.007 30 N -0.273 5.273 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.057 0.943 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.137 0.863 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.212 0.788 48 H 0.202 0.798 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -13.015 -25.419 -3.217 28.738 hybrid contribution -0.012 1.220 1.256 1.751 sum -13.028 -24.199 -1.961 27.553 Atomic orbital electron populations 1.22097 0.77086 1.04240 1.03508 1.47832 1.08428 1.04707 1.73122 1.21381 0.96815 0.84289 0.96814 1.22428 0.94802 0.84297 0.94899 0.92990 1.23265 0.98633 0.95744 0.99399 1.21793 0.95820 0.89524 0.89551 1.45885 1.51613 1.09508 1.28205 1.19310 1.29894 0.86030 1.00269 0.89070 1.25755 1.01145 1.01097 0.98257 1.70059 1.40641 1.28461 1.21413 0.85093 0.77969 0.78431 0.77494 1.22262 1.20231 1.19632 1.20834 0.87553 0.85711 0.75084 1.90679 1.16137 1.87572 1.50530 1.22479 0.94480 0.87537 1.00604 0.86072 1.22484 1.03028 0.98560 0.91453 1.22571 1.02081 0.95519 0.95085 1.23346 1.00541 0.90018 0.92679 1.60792 1.49511 1.07601 0.99433 1.21261 0.87330 0.87832 0.92317 1.68220 1.20586 1.29901 1.10659 1.23689 0.94958 0.93110 0.88989 1.23131 1.00405 0.98896 1.04549 1.23780 0.93200 0.96292 0.87440 1.68020 1.23968 1.20280 1.15002 0.89968 0.89474 0.90681 0.90362 0.92569 0.92036 0.92125 0.95453 0.96096 0.94317 0.86346 0.90899 0.86288 0.91123 0.91635 0.88740 0.78828 0.79848 0.78236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 9.99 127.77 1.28 2.71 16 2 N -0.61 -18.55 2.87 -846.77 -2.43 -20.98 16 3 C 0.13 5.10 5.40 86.38 0.47 5.57 16 4 C 0.14 6.29 4.31 41.79 0.18 6.47 16 5 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 6 C -0.13 -6.08 8.00 30.84 0.25 -5.84 16 7 C 0.16 8.48 7.22 83.09 0.60 9.08 16 8 N -0.63 -34.10 3.64 -714.47 -2.60 -36.70 16 9 C -0.23 -13.08 10.55 84.03 0.89 -12.19 16 10 H 0.09 4.88 7.83 -2.91 -0.02 4.85 16 11 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 12 N -0.96 -60.49 11.73 21.65 0.25 -60.24 16 13 Si 0.98 46.74 29.55 68.60 2.03 48.76 16 14 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 C 0.52 17.34 6.71 87.66 0.59 17.92 16 18 O -0.57 -25.20 16.05 -3.02 -0.05 -25.25 16 19 C 0.06 1.46 1.75 44.31 0.08 1.54 16 20 H 0.12 2.68 4.74 -2.39 -0.01 2.67 16 21 C -0.12 -1.86 6.32 31.47 0.20 -1.67 16 22 C -0.11 -1.62 7.06 31.80 0.22 -1.40 16 23 C 0.06 1.10 6.34 86.60 0.55 1.65 16 24 N -0.45 -12.43 4.57 -675.98 -3.09 -15.52 16 25 C 0.47 13.00 6.99 261.48 1.83 14.83 16 26 N -0.57 -14.34 8.14 -197.98 -1.61 -15.96 16 27 C 0.16 2.85 11.30 84.71 0.96 3.81 16 28 C -0.25 -3.47 10.16 22.44 0.23 -3.24 16 29 C 0.16 2.79 11.30 84.71 0.96 3.74 16 30 N -0.55 -14.36 10.22 -197.98 -2.02 -16.38 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.41 6.19 -2.39 -0.01 1.39 16 33 H 0.07 1.53 8.03 -2.39 -0.02 1.51 16 34 H 0.08 2.90 8.12 -2.39 -0.02 2.88 16 35 H 0.06 2.54 6.98 -2.38 -0.02 2.52 16 36 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.06 3.03 7.93 -2.39 -0.02 3.01 16 38 H 0.03 1.61 7.50 -2.39 -0.02 1.59 16 39 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.33 7.68 -2.39 -0.02 1.31 16 43 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 1.04 7.99 -2.39 -0.02 1.02 16 46 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 48 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.20 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -86.77 397.60 1.15 -85.62 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.95 Total: 17.28 kcal Atomic # 6 Polarization: 29.62 SS G_CDS: 9.73 Total: 39.35 kcal Atomic # 7 Polarization: -154.27 SS G_CDS: -11.51 Total: -165.78 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.05 Total: -25.25 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -86.77 1.15 -85.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085647834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.191 kcal (2) G-P(sol) polarization free energy of solvation -86.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds