Wall clock time and date at job start Wed Apr 1 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00216 * 2 1 4 4 C 1.53005 * 109.46669 * 264.98730 * 3 2 1 5 5 H 1.09001 * 112.73623 * 316.40355 * 4 3 2 6 6 C 1.53491 * 113.46867 * 87.15602 * 4 3 2 7 7 C 1.53618 * 83.30504 * 140.82909 * 6 4 3 8 8 N 1.47063 * 113.46371 * 185.66761 * 4 3 2 9 9 C 1.36938 * 136.05982 * 38.13407 * 8 4 3 10 10 H 1.07998 * 120.00353 * 4.92915 * 9 8 4 11 11 C 1.38814 * 120.00053 * 184.93337 * 9 8 4 12 12 N 1.31624 * 119.99797 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00143 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46920 * 90.00142 * 13 11 9 15 15 H 1.48497 * 109.47253 * 210.00233 * 13 11 9 16 16 H 1.48499 * 109.46924 * 330.00237 * 13 11 9 17 17 C 1.34782 * 119.99830 * 179.97438 * 2 1 3 18 18 O 1.21280 * 120.00024 * 184.12057 * 17 2 1 19 19 C 1.50695 * 119.99955 * 4.11571 * 17 2 1 20 20 H 1.09002 * 109.53548 * 60.09784 * 19 17 2 21 21 C 1.53122 * 109.50720 * 300.00166 * 19 17 2 22 22 C 1.53120 * 109.16071 * 182.40589 * 21 19 17 23 23 C 1.53029 * 109.27956 * 57.65154 * 22 21 19 24 24 N 1.46846 * 109.52376 * 300.82009 * 23 22 21 25 25 C 1.46907 * 110.99803 * 185.83768 * 24 23 22 26 26 C 1.53002 * 109.46914 * 76.86607 * 25 24 23 27 27 F 1.39897 * 109.47305 * 294.14627 * 26 25 24 28 28 F 1.39904 * 109.46997 * 54.14684 * 26 25 24 29 29 C 1.46841 * 111.19790 * 61.74692 * 24 23 22 30 30 H 1.08998 * 109.47345 * 270.00768 * 1 2 3 31 31 H 1.09006 * 109.46536 * 30.00537 * 1 2 3 32 32 H 1.09001 * 109.47087 * 150.00156 * 1 2 3 33 33 H 1.09003 * 109.47189 * 24.98125 * 3 2 1 34 34 H 1.08996 * 109.47119 * 144.98953 * 3 2 1 35 35 H 1.09006 * 114.20443 * 254.43107 * 6 4 3 36 36 H 1.09002 * 114.20986 * 27.25766 * 6 4 3 37 37 H 1.09002 * 113.50215 * 219.18237 * 7 6 4 38 38 H 1.08994 * 113.41293 * 88.75677 * 7 6 4 39 39 H 0.97002 * 119.99223 * 179.97438 * 12 11 9 40 40 H 1.08996 * 109.51826 * 62.49668 * 21 19 17 41 41 H 1.08997 * 109.51655 * 302.30819 * 21 19 17 42 42 H 1.09006 * 109.50089 * 297.70847 * 22 21 19 43 43 H 1.08999 * 109.50182 * 177.59486 * 22 21 19 44 44 H 1.09003 * 109.46487 * 180.80072 * 23 22 21 45 45 H 1.09000 * 109.45413 * 60.83358 * 23 22 21 46 46 H 1.08999 * 109.47342 * 316.87114 * 25 24 23 47 47 H 1.08994 * 109.47043 * 196.86126 * 25 24 23 48 48 H 1.08998 * 109.47257 * 174.14243 * 26 25 24 49 49 H 1.08998 * 109.46561 * 58.26811 * 29 24 23 50 50 H 1.09000 * 109.46433 * 178.24311 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5617 1.6473 -1.4371 5 1 2.9351 0.8011 -2.0139 6 6 1.4629 2.4409 -2.1573 7 6 2.6538 3.2255 -2.7280 8 7 3.4150 2.8414 -1.5297 9 6 4.4594 3.3649 -0.8153 10 1 4.8813 2.8100 0.0096 11 6 4.9757 4.6089 -1.1511 12 7 4.4617 5.2851 -2.1567 13 14 6.3998 5.3234 -0.1761 14 1 7.6830 4.9006 -0.7923 15 1 6.3112 6.8057 -0.1845 16 1 6.3372 4.8317 1.2238 17 6 2.1389 -1.1673 0.0005 18 8 3.3493 -1.1686 0.0760 19 6 1.3883 -2.4707 -0.0926 20 1 0.8192 -2.4980 -1.0218 21 6 0.4317 -2.5959 1.0965 22 6 -0.2825 -3.9485 1.0267 23 6 0.7588 -5.0699 1.0197 24 7 1.6488 -4.9059 -0.1367 25 6 2.5742 -6.0409 -0.2539 26 6 1.8330 -7.2449 -0.8385 27 9 0.8575 -7.6765 0.0665 28 9 1.2222 -6.8770 -2.0422 29 6 2.3811 -3.6350 -0.0671 30 1 -0.3634 0.0001 1.0276 31 1 -0.3632 0.8900 -0.5140 32 1 -0.3633 -0.8900 -0.5138 33 1 1.5725 2.0492 0.4340 34 1 3.1081 1.1625 0.5896 35 1 0.9092 1.8654 -2.8992 36 1 0.8223 3.0212 -1.4931 37 1 2.4726 4.2978 -2.8020 38 1 3.0511 2.8001 -3.6495 39 1 4.8223 6.1545 -2.3911 40 1 -0.3043 -1.7928 1.0580 41 1 0.9962 -2.5296 2.0266 42 1 -0.8779 -3.9990 0.1151 43 1 -0.9333 -4.0615 1.8938 44 1 0.2540 -6.0339 0.9557 45 1 1.3446 -5.0271 1.9379 46 1 2.9620 -6.2968 0.7321 47 1 3.4008 -5.7693 -0.9103 48 1 2.5409 -8.0530 -1.0226 49 1 2.9593 -3.5991 0.8562 50 1 3.0546 -3.5567 -0.9206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085787834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:33 Heat of formation + Delta-G solvation = -90.213943 kcal Electronic energy + Delta-G solvation = -31658.643138 eV Core-core repulsion = 27164.799431 eV Total energy + Delta-G solvation = -4493.843707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.78389 -47.79350 -41.58203 -40.02715 -39.10155 -36.61411 -34.99344 -34.25458 -32.17621 -30.47685 -29.92727 -29.47641 -27.53928 -25.45675 -25.26022 -25.00561 -23.47441 -22.96513 -21.17298 -20.95027 -20.06636 -18.79610 -18.53480 -18.19221 -17.85642 -17.53939 -17.22891 -16.84977 -16.44232 -16.35782 -15.84278 -15.77787 -15.31432 -15.12498 -14.83827 -14.78011 -14.65040 -14.42019 -14.17165 -14.15519 -13.71897 -13.69153 -13.53554 -13.45807 -13.33845 -13.15899 -12.97693 -12.76747 -12.62582 -12.58662 -12.37998 -12.23017 -12.05261 -11.81545 -11.77653 -11.63642 -11.58718 -11.29424 -11.15124 -10.86484 -10.60143 -9.58001 -9.46298 -8.92603 -7.91999 -5.26699 1.41336 1.43769 1.52538 1.62001 1.95106 2.45341 2.68620 3.05022 3.27327 3.45160 3.46885 3.48892 3.60560 3.75409 3.81130 3.86824 4.07777 4.11417 4.19331 4.24437 4.27699 4.32446 4.39630 4.50237 4.52538 4.55406 4.59477 4.67561 4.69868 4.73062 4.80287 4.89886 4.92158 4.93380 4.98015 4.99842 5.07251 5.11010 5.20982 5.23601 5.40083 5.46673 5.54187 5.74851 5.84750 5.94786 5.98459 6.45742 6.90276 7.19352 7.58172 8.59666 9.24339 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.002271 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.716302 B =12323.851507 C =12655.040911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.605 5.605 3 C 0.132 3.868 4 C 0.136 3.864 5 H 0.023 0.977 6 C -0.126 4.126 7 C 0.138 3.862 8 N -0.631 5.631 9 C -0.225 4.225 10 H 0.072 0.928 11 C -0.064 4.064 12 N -0.950 5.950 13 Si 0.976 3.024 14 H -0.290 1.290 15 H -0.287 1.287 16 H -0.269 1.269 17 C 0.508 3.492 18 O -0.593 6.593 19 C -0.089 4.089 20 H 0.119 0.881 21 C -0.121 4.121 22 C -0.107 4.107 23 C 0.035 3.965 24 N -0.539 5.539 25 C -0.004 4.004 26 C 0.268 3.732 27 F -0.216 7.216 28 F -0.214 7.214 29 C 0.085 3.915 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.008 0.992 39 H 0.249 0.751 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.031 0.969 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.153 0.847 49 H 0.027 0.973 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.914 -25.616 6.193 30.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.336 5.336 3 C 0.008 3.992 4 C 0.028 3.972 5 H 0.040 0.960 6 C -0.164 4.164 7 C 0.012 3.988 8 N -0.357 5.357 9 C -0.353 4.353 10 H 0.090 0.910 11 C -0.257 4.257 12 N -0.599 5.599 13 Si 0.804 3.196 14 H -0.217 1.217 15 H -0.213 1.213 16 H -0.194 1.194 17 C 0.297 3.703 18 O -0.473 6.473 19 C -0.111 4.111 20 H 0.137 0.863 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.092 4.092 24 N -0.264 5.264 25 C -0.133 4.133 26 C 0.214 3.786 27 F -0.197 7.197 28 F -0.195 7.195 29 C -0.044 4.044 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.050 0.950 46 H 0.098 0.902 47 H 0.128 0.872 48 H 0.170 0.830 49 H 0.046 0.954 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.392 -25.352 5.922 29.747 hybrid contribution 2.031 0.791 0.725 2.297 sum -12.361 -24.560 6.647 28.287 Atomic orbital electron populations 1.22374 0.76661 1.05103 1.03430 1.47899 1.08694 1.04730 1.72327 1.21420 0.96168 0.84888 0.96733 1.22463 0.90068 0.89714 0.94912 0.95977 1.23510 0.95038 0.97973 0.99848 1.22159 0.89213 0.98813 0.88599 1.46055 1.37597 1.23237 1.28852 1.19179 1.07616 0.99192 1.09344 0.90992 1.25597 1.02728 0.97467 0.99954 1.70009 1.44703 1.14066 1.31110 0.85113 0.78726 0.77277 0.78455 1.21711 1.21307 1.19421 1.21280 0.87431 0.86551 0.75029 1.90702 1.16790 1.88112 1.51698 1.21223 0.97306 0.89316 1.03216 0.86340 1.21934 0.98203 1.00361 0.95305 1.21557 0.97120 0.91973 1.03825 1.22582 0.95052 1.01439 0.90146 1.61858 1.20428 1.01115 1.42992 1.23356 0.95782 0.90926 1.03261 1.22381 0.85030 0.97227 0.73962 1.92871 1.67466 1.90915 1.68454 1.92968 1.85770 1.93452 1.47330 1.21665 0.94146 0.87940 1.00605 0.90277 0.89758 0.88397 0.88904 0.94211 0.88966 0.88798 0.93323 0.97429 0.94178 0.87691 0.92887 0.90303 0.89028 0.88662 0.95027 0.90240 0.87202 0.83014 0.95432 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 8.76 127.77 1.12 2.15 16 2 N -0.60 -16.68 2.88 -846.74 -2.44 -19.12 16 3 C 0.13 4.86 5.34 86.38 0.46 5.32 16 4 C 0.14 5.76 4.28 41.79 0.18 5.94 16 5 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 6 C -0.13 -4.50 8.02 30.97 0.25 -4.25 16 7 C 0.14 6.77 7.52 83.22 0.63 7.39 16 8 N -0.63 -34.07 3.65 -713.28 -2.60 -36.67 16 9 C -0.23 -13.36 10.55 84.03 0.89 -12.48 16 10 H 0.07 4.25 7.83 -2.91 -0.02 4.22 16 11 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 12 N -0.95 -58.97 11.43 21.65 0.25 -58.72 16 13 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 17 C 0.51 15.50 7.06 87.65 0.62 16.12 16 18 O -0.59 -24.64 15.62 -3.03 -0.05 -24.69 16 19 C -0.09 -1.87 1.89 -11.49 -0.02 -1.90 16 20 H 0.12 2.22 7.55 -2.39 -0.02 2.20 16 21 C -0.12 -1.81 4.83 30.68 0.15 -1.66 16 22 C -0.11 -1.32 6.09 30.64 0.19 -1.13 16 23 C 0.03 0.53 5.23 86.32 0.45 0.98 16 24 N -0.54 -9.55 4.40 -896.38 -3.95 -13.49 16 25 C 0.00 -0.06 5.39 86.30 0.46 0.41 16 26 C 0.27 3.12 5.59 71.98 0.40 3.53 16 27 F -0.22 -3.19 14.69 44.97 0.66 -2.53 16 28 F -0.21 -3.92 17.15 44.97 0.77 -3.15 16 29 C 0.08 1.90 3.99 86.33 0.34 2.24 16 30 H 0.08 0.94 7.20 -2.39 -0.02 0.93 16 31 H 0.08 1.24 8.07 -2.38 -0.02 1.22 16 32 H 0.10 1.10 5.73 -2.39 -0.01 1.09 16 33 H 0.09 3.11 7.76 -2.39 -0.02 3.10 16 34 H 0.04 1.77 7.52 -2.39 -0.02 1.76 16 35 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 36 H 0.09 3.08 7.93 -2.39 -0.02 3.06 16 37 H 0.05 2.64 6.92 -2.39 -0.02 2.63 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.10 1.16 4.42 -2.39 -0.01 1.15 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 1.42 5.47 -2.39 -0.01 1.41 16 45 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.08 0.87 7.98 -2.39 -0.02 0.85 16 47 H 0.11 1.34 7.77 -2.39 -0.02 1.32 16 48 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 50 H 0.07 1.72 7.90 -2.39 -0.02 1.70 16 Total: -1.00 -80.65 392.31 2.18 -78.47 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.93 Total: 10.83 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 6.58 Total: 19.30 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -8.74 Total: -128.01 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.43 Total: -5.68 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -80.65 2.18 -78.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085787834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.747 kcal (2) G-P(sol) polarization free energy of solvation -80.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds