Wall clock time and date at job start Wed Apr 1 2020 03:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00315 * 2 1 4 4 C 1.52993 * 109.47258 * 96.51638 * 3 2 1 5 5 H 1.08999 * 112.97134 * 49.51546 * 4 3 2 6 6 C 1.53949 * 113.76801 * 181.19633 * 4 3 2 7 7 C 1.53948 * 86.28919 * 137.90585 * 6 4 3 8 8 N 1.47588 * 113.76819 * 277.83501 * 4 3 2 9 9 C 1.36939 * 134.49037 * 41.07043 * 8 4 3 10 10 H 1.07997 * 120.00152 * 6.40114 * 9 8 4 11 11 C 1.38808 * 119.99782 * 186.39676 * 9 8 4 12 12 N 1.31618 * 120.00329 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99631 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47022 * 90.00921 * 13 11 9 15 15 H 1.48502 * 109.46927 * 210.00196 * 13 11 9 16 16 H 1.48494 * 109.47403 * 330.00166 * 13 11 9 17 17 C 1.34781 * 119.99693 * 179.97438 * 2 1 3 18 18 O 1.21477 * 119.99877 * 184.88848 * 17 2 1 19 19 C 1.48438 * 120.00159 * 4.88913 * 17 2 1 20 20 C 1.39080 * 120.51318 * 185.86202 * 19 17 2 21 21 C 1.39846 * 118.19519 * 180.02562 * 20 19 17 22 22 N 1.38502 * 120.51500 * 179.97438 * 21 20 19 23 23 C 1.48541 * 110.99825 * 62.60523 * 22 21 20 24 24 C 1.54932 * 103.22765 * 159.71970 * 23 22 21 25 25 C 1.54596 * 102.92266 * 322.58783 * 24 23 22 26 26 C 1.47901 * 111.00266 * 179.97438 * 22 21 20 27 27 N 1.32840 * 118.97269 * 359.97438 * 21 20 19 28 28 C 1.31845 * 120.91198 * 359.97438 * 27 21 20 29 29 N 1.31561 * 122.00725 * 359.71455 * 28 27 21 30 30 H 1.09006 * 109.46815 * 356.19523 * 1 2 3 31 31 H 1.08999 * 109.46615 * 116.18919 * 1 2 3 32 32 H 1.08992 * 109.47236 * 236.19554 * 1 2 3 33 33 H 1.09006 * 109.46579 * 216.51551 * 3 2 1 34 34 H 1.09000 * 109.46807 * 336.51462 * 3 2 1 35 35 H 1.08999 * 113.74271 * 252.25036 * 6 4 3 36 36 H 1.08999 * 113.74035 * 23.45542 * 6 4 3 37 37 H 1.09004 * 113.77254 * 90.69343 * 7 6 4 38 38 H 1.08998 * 113.76886 * 221.97763 * 7 6 4 39 39 H 0.96999 * 120.00325 * 179.97438 * 12 11 9 40 40 H 1.08003 * 120.89674 * 359.97438 * 20 19 17 41 41 H 1.09000 * 110.66875 * 278.15579 * 23 22 21 42 42 H 1.09002 * 110.66260 * 41.28768 * 23 22 21 43 43 H 1.09000 * 110.72808 * 204.22683 * 24 23 22 44 44 H 1.08999 * 110.72428 * 80.94634 * 24 23 22 45 45 H 1.09001 * 110.30597 * 263.03912 * 25 24 23 46 46 H 1.09005 * 110.30773 * 140.87379 * 25 24 23 47 47 H 1.08996 * 109.91705 * 333.51729 * 26 22 21 48 48 H 1.09005 * 109.91612 * 94.60994 * 26 22 21 49 49 H 1.07997 * 118.99654 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5944 1.6285 1.4331 5 1 3.0756 0.8051 1.9607 6 6 3.3479 2.9658 1.5511 7 6 2.4812 3.2297 2.7957 8 7 1.5166 2.2794 2.2031 9 6 0.1666 2.0818 2.3199 10 1 -0.2980 1.2314 1.8430 11 6 -0.6048 2.9744 3.0513 12 7 -0.0388 4.0110 3.6322 13 14 -2.4465 2.7052 3.2100 14 1 -2.7234 1.8704 4.4066 15 1 -3.1280 4.0168 3.3531 16 1 -2.9522 2.0144 1.9967 17 6 2.1388 -1.1673 0.0005 18 8 3.3503 -1.1692 0.0902 19 6 1.4007 -2.4505 -0.1085 20 6 2.0708 -3.6631 0.0127 21 6 1.3278 -4.8427 -0.0986 22 7 1.9464 -6.0767 0.0137 23 6 2.5465 -6.2506 1.3613 24 6 2.6999 -7.7873 1.4855 25 6 1.4279 -8.3193 0.7863 26 6 0.9681 -7.1757 -0.1362 27 7 0.0195 -4.7611 -0.3138 28 6 -0.5776 -3.5906 -0.4215 29 7 0.0839 -2.4581 -0.3170 30 1 -0.3633 1.0255 0.0682 31 1 -0.3632 -0.4536 -0.9222 32 1 -0.3633 -0.5717 0.8539 33 1 3.0945 1.1703 -0.6116 34 1 1.5630 2.0546 -0.4095 35 1 4.4095 2.8534 1.7714 36 1 3.1554 3.6522 0.7266 37 1 2.9281 2.8769 3.7253 38 1 2.1097 4.2522 2.8637 39 1 -0.5779 4.6349 4.1430 40 1 3.1362 -3.6930 0.1871 41 1 3.5190 -5.7613 1.4155 42 1 1.8783 -5.8671 2.1324 43 1 2.7196 -8.0897 2.5326 44 1 3.5961 -8.1286 0.9675 45 1 0.6568 -8.5438 1.5234 46 1 1.6620 -9.2080 0.2000 47 1 -0.0230 -6.8338 0.1617 48 1 0.9476 -7.5159 -1.1717 49 1 -1.6429 -3.5603 -0.5960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085818898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:09 Heat of formation + Delta-G solvation = 112.139115 kcal Electronic energy + Delta-G solvation = -30769.410287 eV Core-core repulsion = 26735.030454 eV Total energy + Delta-G solvation = -4034.379833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59705 -39.74793 -38.82161 -37.67058 -35.17604 -34.09302 -32.84307 -32.18834 -30.24184 -29.44613 -28.63617 -27.77351 -26.38931 -24.85828 -24.33434 -23.27809 -22.69964 -21.77321 -21.18765 -19.76328 -19.03725 -17.90635 -17.76767 -16.83814 -16.40024 -16.00989 -15.75046 -15.59277 -15.38923 -15.04928 -14.84474 -14.66697 -14.25802 -13.96488 -13.65933 -13.42556 -13.25397 -13.00373 -12.84897 -12.61162 -12.51853 -12.01778 -11.81146 -11.64510 -11.45443 -11.36281 -11.10651 -11.02531 -11.02484 -10.93218 -10.77153 -10.67580 -10.49623 -10.18055 -10.12032 -9.88751 -9.64922 -9.35725 -9.14168 -8.86320 -8.72208 -8.16405 -6.79741 -5.71504 -3.04277 0.46038 0.76568 2.81879 2.97796 3.27557 3.38146 3.42388 3.45439 3.74590 3.88187 3.93460 4.15743 4.36587 4.46136 4.48699 4.63716 4.82685 4.87370 5.02427 5.10381 5.18616 5.28628 5.36289 5.38921 5.42509 5.45924 5.54604 5.60142 5.69664 5.73267 5.81661 5.88334 5.92721 6.00647 6.06025 6.12277 6.17304 6.29976 6.50184 6.51666 6.62832 6.65630 6.75471 6.80423 6.99946 7.32634 7.49723 7.65297 7.67926 7.85366 8.04777 8.30567 9.08603 9.76391 10.68752 11.44785 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.002851 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.282866 B = 9819.745954 C =10679.794093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.573 5.573 3 C 0.117 3.883 4 C 0.129 3.871 5 H 0.048 0.952 6 C -0.157 4.157 7 C 0.152 3.848 8 N -0.603 5.603 9 C -0.223 4.223 10 H 0.088 0.912 11 C -0.009 4.009 12 N -0.920 5.920 13 Si 0.903 3.097 14 H -0.291 1.291 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.560 3.440 18 O -0.534 6.534 19 C 0.155 3.845 20 C -0.177 4.177 21 C 0.345 3.655 22 N -0.459 5.459 23 C 0.042 3.958 24 C -0.123 4.123 25 C -0.133 4.133 26 C 0.034 3.966 27 N -0.548 5.548 28 C 0.314 3.686 29 N -0.503 5.503 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.079 0.921 39 H 0.251 0.749 40 H 0.158 0.842 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 -20.485 -8.146 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.302 5.302 3 C -0.006 4.006 4 C 0.021 3.979 5 H 0.065 0.935 6 C -0.196 4.196 7 C 0.027 3.973 8 N -0.329 5.329 9 C -0.351 4.351 10 H 0.105 0.895 11 C -0.206 4.206 12 N -0.567 5.567 13 Si 0.733 3.267 14 H -0.219 1.219 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.344 3.656 18 O -0.411 6.411 19 C 0.009 3.991 20 C -0.203 4.203 21 C 0.103 3.897 22 N -0.177 5.177 23 C -0.084 4.084 24 C -0.161 4.161 25 C -0.171 4.171 26 C -0.092 4.092 27 N -0.269 5.269 28 C 0.024 3.976 29 N -0.221 5.221 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.038 0.962 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.176 0.824 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.731 -20.349 -8.539 22.237 hybrid contribution -0.899 -0.220 0.938 1.317 sum 1.833 -20.569 -7.602 22.005 Atomic orbital electron populations 1.22195 0.77590 1.03189 1.01955 1.47699 1.08400 1.05299 1.68769 1.22080 0.96327 0.83385 0.98771 1.22605 0.89637 0.94564 0.91093 0.93470 1.23743 0.97378 0.97394 1.01086 1.22316 0.86561 0.96923 0.91487 1.46160 1.01425 1.36008 1.49324 1.19306 0.80747 1.07157 1.27863 0.89490 1.24787 0.97656 0.97401 1.00729 1.69816 1.34022 1.14935 1.37933 0.86260 0.85542 0.76956 0.77907 1.21877 1.21713 1.20424 1.17765 0.86438 0.82795 0.78567 1.90761 1.12900 1.86580 1.50857 1.21593 0.90044 0.94376 0.93044 1.22343 1.03214 0.91019 1.03706 1.20158 0.87911 0.91155 0.90440 1.61730 1.27982 0.99756 1.28275 1.23402 1.00580 0.97882 0.86512 1.22522 0.98795 0.93414 1.01379 1.22453 0.97646 0.98297 0.98715 1.22932 0.95704 0.89326 1.01276 1.68219 1.09661 1.30888 1.18119 1.24900 1.00886 0.81789 0.89999 1.68960 1.07800 1.30993 1.14391 0.89604 0.91501 0.91867 0.90766 0.89316 0.93016 0.90673 0.96165 0.90285 0.93832 0.82423 0.88541 0.92272 0.90149 0.90122 0.90996 0.90538 0.89748 0.89778 0.78208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 7.23 59.85 0.43 2.00 16 2 N -0.57 -10.29 2.89 -182.47 -0.53 -10.81 16 3 C 0.12 2.15 5.16 -4.04 -0.02 2.13 16 4 C 0.13 2.71 4.48 -66.86 -0.30 2.41 16 5 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.16 -3.05 7.86 -25.79 -0.20 -3.25 16 7 C 0.15 3.63 7.69 -2.85 -0.02 3.61 16 8 N -0.60 -15.12 3.58 -169.71 -0.61 -15.73 16 9 C -0.22 -5.96 9.90 -15.06 -0.15 -6.10 16 10 H 0.09 2.18 4.27 -52.49 -0.22 1.95 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 12 N -0.92 -27.05 11.30 55.49 0.63 -26.42 16 13 Si 0.90 21.68 29.55 -169.99 -5.02 16.65 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.56 10.02 7.61 -12.06 -0.09 9.93 16 18 O -0.53 -10.52 16.17 5.39 0.09 -10.44 16 19 C 0.15 2.40 6.66 -82.71 -0.55 1.85 16 20 C -0.18 -2.44 9.13 -38.67 -0.35 -2.79 16 21 C 0.34 4.27 6.21 -154.86 -0.96 3.31 16 22 N -0.46 -4.76 5.30 -169.06 -0.90 -5.66 16 23 C 0.04 0.35 6.08 -1.90 -0.01 0.34 16 24 C -0.12 -0.77 7.06 -24.87 -0.18 -0.94 16 25 C -0.13 -0.84 6.93 -25.39 -0.18 -1.01 16 26 C 0.03 0.30 6.36 -2.77 -0.02 0.28 16 27 N -0.55 -6.66 8.28 -13.83 -0.11 -6.77 16 28 C 0.31 3.69 12.27 -92.31 -1.13 2.56 16 29 N -0.50 -7.09 6.27 -11.22 -0.07 -7.16 16 30 H 0.09 1.57 6.18 -51.93 -0.32 1.25 16 31 H 0.07 0.99 6.87 -51.93 -0.36 0.63 16 32 H 0.06 1.12 6.98 -51.93 -0.36 0.76 16 33 H 0.07 1.27 7.70 -51.93 -0.40 0.87 16 34 H 0.09 1.62 7.82 -51.93 -0.41 1.22 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 2.06 6.91 -51.93 -0.36 1.70 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.16 2.09 7.74 -52.48 -0.41 1.69 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.54 7.99 -51.93 -0.42 0.13 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.82 6.53 -51.93 -0.34 0.48 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -32.39 387.54 -11.89 -44.28 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.37 Total: 2.26 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -3.83 Total: 13.97 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.59 Total: -72.56 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.39 -11.89 -44.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085818898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.416 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds