Wall clock time and date at job start Wed Apr 1 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99741 * 2 1 4 4 C 1.52999 * 109.46843 * 263.67086 * 3 2 1 5 5 H 1.08997 * 112.96443 * 311.16475 * 4 3 2 6 6 C 1.53949 * 113.76617 * 179.49255 * 4 3 2 7 7 C 1.53945 * 86.28895 * 222.09149 * 6 4 3 8 8 N 1.47584 * 86.24119 * 23.55003 * 7 6 4 9 9 C 1.36929 * 134.49274 * 155.42707 * 8 7 6 10 10 H 1.07998 * 120.00600 * 153.05193 * 9 8 7 11 11 C 1.38813 * 120.00255 * 333.04900 * 9 8 7 12 12 N 1.31614 * 120.00529 * 171.18780 * 11 9 8 13 13 Si 1.86809 * 119.99844 * 351.18335 * 11 9 8 14 14 H 1.48506 * 109.46748 * 86.03127 * 13 11 9 15 15 H 1.48497 * 109.47187 * 206.03120 * 13 11 9 16 16 H 1.48499 * 109.47001 * 326.03421 * 13 11 9 17 17 C 1.34769 * 120.00045 * 179.97438 * 2 1 3 18 18 O 1.21520 * 120.00241 * 185.04563 * 17 2 1 19 19 C 1.48132 * 120.00464 * 5.04883 * 17 2 1 20 20 C 1.39241 * 120.05307 * 187.06607 * 19 17 2 21 21 N 1.32187 * 120.06636 * 179.97438 * 20 19 17 22 22 C 1.31928 * 120.16921 * 359.97438 * 21 20 19 23 23 C 1.39660 * 120.08895 * 359.97438 * 22 21 20 24 24 N 1.38981 * 120.02854 * 180.02562 * 23 22 21 25 25 C 1.48537 * 110.99758 * 186.05521 * 24 23 22 26 26 C 1.54937 * 103.22550 * 159.72086 * 25 24 23 27 27 C 1.54597 * 102.92506 * 322.58852 * 26 25 24 28 28 C 1.47892 * 111.00218 * 303.45276 * 24 23 22 29 29 N 1.32340 * 119.94132 * 359.76709 * 23 22 21 30 30 H 1.09005 * 109.47120 * 93.73505 * 1 2 3 31 31 H 1.09004 * 109.46772 * 213.73174 * 1 2 3 32 32 H 1.09000 * 109.47608 * 333.72834 * 1 2 3 33 33 H 1.08997 * 109.46821 * 143.66999 * 3 2 1 34 34 H 1.09003 * 109.47365 * 23.67260 * 3 2 1 35 35 H 1.09004 * 113.74127 * 107.74330 * 6 4 3 36 36 H 1.09003 * 113.83786 * 336.44422 * 6 4 3 37 37 H 1.09002 * 113.77225 * 137.90901 * 7 6 4 38 38 H 1.09000 * 113.76670 * 269.19364 * 7 6 4 39 39 H 0.97007 * 120.00383 * 180.02562 * 12 11 9 40 40 H 1.08000 * 119.96359 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.95585 * 180.02562 * 22 21 20 42 42 H 1.08996 * 110.66904 * 278.15612 * 25 24 23 43 43 H 1.08996 * 110.66538 * 41.29152 * 25 24 23 44 44 H 1.08999 * 110.72692 * 204.23076 * 26 25 24 45 45 H 1.09010 * 110.87504 * 81.01662 * 26 25 24 46 46 H 1.08996 * 110.30905 * 263.04083 * 27 26 25 47 47 H 1.08999 * 110.39352 * 140.90804 * 27 26 25 48 48 H 1.08998 * 109.91766 * 333.51186 * 28 24 23 49 49 H 1.09008 * 109.91775 * 94.60424 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5901 1.6309 -1.4337 5 1 3.0593 0.8046 -1.9678 6 6 3.3579 2.9602 -1.5498 7 6 2.4872 3.2396 -2.7882 8 7 1.5152 2.2997 -2.1966 9 6 0.1624 2.1209 -2.3094 10 1 -0.2694 1.1455 -2.1407 11 6 -0.6543 3.1934 -2.6406 12 7 -1.9248 2.9919 -2.9190 13 14 0.0499 4.9229 -2.6910 14 1 0.6460 5.1759 -4.0274 15 1 -1.0338 5.9062 -2.4382 16 1 1.0974 5.0615 -1.6475 17 6 2.1389 -1.1671 0.0005 18 8 3.3505 -1.1692 0.0931 19 6 1.4026 -2.4476 -0.1118 20 6 2.0786 -3.6559 0.0359 21 7 1.4218 -4.7987 -0.0638 22 6 0.1244 -4.7991 -0.3029 23 6 -0.5606 -3.5911 -0.4511 24 7 -1.9275 -3.5929 -0.7024 25 6 -2.4218 -2.2175 -0.9675 26 6 -3.7556 -2.4586 -1.7181 27 6 -3.4383 -3.6875 -2.6008 28 6 -2.2420 -4.3755 -1.9173 29 7 0.0921 -2.4445 -0.3470 30 1 -0.3634 -0.0669 -1.0255 31 1 -0.3633 -0.8547 0.5707 32 1 -0.3634 0.9215 0.4549 33 1 3.0961 1.1695 0.6088 34 1 1.5640 2.0541 0.4126 35 1 4.4170 2.8370 -1.7766 36 1 3.1775 3.6468 -0.7226 37 1 2.1252 4.2660 -2.8483 38 1 2.9259 2.8880 -3.7220 39 1 -2.4954 3.7414 -3.1508 40 1 3.1407 -3.6594 0.2321 41 1 -0.4089 -5.7348 -0.3832 42 1 -2.5972 -1.6849 -0.0328 43 1 -1.7195 -1.6710 -1.5970 44 1 -4.0126 -1.5971 -2.3344 45 1 -4.5601 -2.6840 -1.0179 46 1 -3.1675 -3.3703 -3.6078 47 1 -4.2939 -4.3620 -2.6345 48 1 -1.3833 -4.3803 -2.5885 49 1 -2.5045 -5.3974 -1.6431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085856565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:18 Heat of formation + Delta-G solvation = 99.369929 kcal Electronic energy + Delta-G solvation = -31858.823882 eV Core-core repulsion = 27823.890335 eV Total energy + Delta-G solvation = -4034.933547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.70115 -40.97409 -39.89623 -39.40475 -36.69799 -35.39984 -34.39512 -33.93716 -30.85937 -30.46921 -30.13632 -29.70340 -27.74080 -26.33656 -25.42240 -25.07220 -24.22744 -22.41314 -22.03068 -21.06598 -20.62180 -19.10933 -18.98681 -18.43055 -17.90816 -17.50991 -17.32143 -17.31756 -17.01162 -16.63964 -16.17508 -15.46007 -15.32430 -15.02300 -14.86580 -14.81282 -14.39098 -14.28897 -14.04535 -13.88135 -13.79299 -13.56478 -13.41911 -13.16094 -12.96332 -12.81087 -12.65276 -12.45913 -12.30541 -12.22467 -12.16177 -12.08312 -11.89828 -11.54639 -11.51430 -11.44917 -11.22204 -11.02526 -10.72378 -10.12926 -9.77982 -9.40584 -8.90943 -8.07972 -5.43462 -0.74068 -0.11827 1.32679 1.39080 1.48680 1.53036 1.84294 2.24025 2.46939 2.63183 2.86286 2.95938 3.10869 3.23718 3.32067 3.54198 3.66463 3.77351 3.81578 4.01084 4.07746 4.16144 4.24141 4.25813 4.30661 4.37889 4.50910 4.52718 4.57418 4.60381 4.64303 4.77148 4.78818 4.85983 4.86363 4.86971 4.97166 5.00404 5.02756 5.12267 5.13943 5.17954 5.36014 5.44545 5.52748 5.61086 5.75535 6.10241 6.22033 6.29086 6.53857 6.63631 6.92853 7.53647 8.38322 9.11251 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.004379 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.627742 B = 6392.492980 C = 8577.159621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.580 5.580 3 C 0.121 3.879 4 C 0.133 3.867 5 H 0.044 0.956 6 C -0.121 4.121 7 C 0.083 3.917 8 N -0.641 5.641 9 C -0.209 4.209 10 H 0.074 0.926 11 C -0.032 4.032 12 N -0.959 5.959 13 Si 0.946 3.054 14 H -0.291 1.291 15 H -0.314 1.314 16 H -0.250 1.250 17 C 0.565 3.435 18 O -0.557 6.557 19 C 0.042 3.958 20 C 0.076 3.924 21 N -0.428 5.428 22 C 0.080 3.920 23 C 0.245 3.755 24 N -0.449 5.449 25 C 0.045 3.955 26 C -0.125 4.125 27 C -0.126 4.126 28 C 0.040 3.960 29 N -0.453 5.453 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.258 0.742 40 H 0.189 0.811 41 H 0.211 0.789 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.104 0.896 48 H 0.047 0.953 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 -14.806 5.697 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.309 5.309 3 C -0.002 4.002 4 C 0.027 3.973 5 H 0.061 0.939 6 C -0.159 4.159 7 C -0.041 4.041 8 N -0.370 5.370 9 C -0.337 4.337 10 H 0.091 0.909 11 C -0.227 4.227 12 N -0.607 5.607 13 Si 0.778 3.222 14 H -0.218 1.218 15 H -0.243 1.243 16 H -0.175 1.175 17 C 0.352 3.648 18 O -0.436 6.436 19 C -0.098 4.098 20 C -0.082 4.082 21 N -0.141 5.141 22 C -0.087 4.087 23 C 0.007 3.993 24 N -0.167 5.167 25 C -0.082 4.082 26 C -0.163 4.163 27 C -0.164 4.164 28 C -0.085 4.085 29 N -0.176 5.176 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.206 0.794 41 H 0.227 0.773 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.123 0.877 48 H 0.066 0.934 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.218 -14.932 6.155 16.197 hybrid contribution 0.081 1.673 -1.151 2.033 sum 1.299 -13.258 5.004 14.231 Atomic orbital electron populations 1.22114 0.77429 1.01625 1.01966 1.47743 1.08438 1.05538 1.69147 1.21900 0.97305 0.83906 0.97131 1.22782 0.87775 0.95146 0.91639 0.93853 1.23434 0.98832 0.95978 0.97681 1.23094 0.90143 0.94202 0.96687 1.46603 1.01423 1.39040 1.49890 1.18775 0.79788 0.94661 1.40505 0.90873 1.25593 0.95137 1.00786 1.01134 1.69846 1.06202 1.31590 1.53058 0.85890 0.76401 0.81543 0.78393 1.21840 1.24318 1.17516 1.17945 0.86344 0.83216 0.77328 1.90727 1.13369 1.87146 1.52400 1.21909 0.90529 0.95668 1.01659 1.23665 1.02409 0.86572 0.95597 1.68602 1.08481 1.28161 1.08818 1.24139 0.90359 0.98939 0.95264 1.21552 0.91475 0.90416 0.95884 1.61983 1.06029 1.13491 1.35178 1.23182 0.96377 0.87823 1.00773 1.22529 0.96383 0.98546 0.98843 1.22429 0.98323 0.97114 0.98487 1.23190 0.98322 0.99455 0.87560 1.68853 1.07785 1.29062 1.11930 0.93473 0.89168 0.92647 0.88515 0.89753 0.88521 0.88948 0.94371 0.93401 0.93315 0.79445 0.77274 0.90017 0.93778 0.91312 0.89094 0.91553 0.87739 0.93406 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.08 8.17 127.77 1.04 5.12 16 2 N -0.58 -21.04 2.89 -849.85 -2.45 -23.50 16 3 C 0.12 4.23 5.31 86.38 0.46 4.69 16 4 C 0.13 5.09 4.50 45.05 0.20 5.29 16 5 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 6 C -0.12 -3.90 7.86 31.25 0.25 -3.65 16 7 C 0.08 3.34 7.40 86.48 0.64 3.98 16 8 N -0.64 -29.72 3.23 -690.89 -2.23 -31.95 16 9 C -0.21 -11.36 10.32 84.04 0.87 -10.49 16 10 H 0.07 4.26 5.13 -2.91 -0.01 4.25 16 11 C -0.03 -1.85 5.50 84.86 0.47 -1.38 16 12 N -0.96 -58.20 13.97 21.65 0.30 -57.90 16 13 Si 0.95 46.22 24.83 68.60 1.70 47.92 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 15 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 16 H -0.25 -11.28 6.46 99.48 0.64 -10.63 16 17 C 0.57 20.07 7.60 86.87 0.66 20.73 16 18 O -0.56 -20.99 16.01 -3.78 -0.06 -21.05 16 19 C 0.04 1.34 6.55 41.82 0.27 1.61 16 20 C 0.08 2.06 10.76 84.88 0.91 2.97 16 21 N -0.43 -10.41 10.48 -193.60 -2.03 -12.44 16 22 C 0.08 1.67 10.46 85.02 0.89 2.56 16 23 C 0.24 6.15 6.16 133.22 0.82 6.97 16 24 N -0.45 -9.90 5.32 -688.89 -3.67 -13.56 16 25 C 0.05 1.20 5.90 86.65 0.51 1.71 16 26 C -0.12 -2.67 7.06 31.80 0.22 -2.44 16 27 C -0.13 -2.07 6.93 31.48 0.22 -1.86 16 28 C 0.04 0.65 5.97 86.45 0.52 1.17 16 29 N -0.45 -13.87 4.57 -181.79 -0.83 -14.70 16 30 H 0.05 2.04 4.82 -2.38 -0.01 2.03 16 31 H 0.09 3.03 5.62 -2.38 -0.01 3.02 16 32 H 0.05 2.09 7.80 -2.39 -0.02 2.07 16 33 H 0.10 3.04 7.55 -2.39 -0.02 3.02 16 34 H 0.08 3.03 7.79 -2.39 -0.02 3.01 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.09 2.80 8.10 -2.39 -0.02 2.78 16 37 H 0.04 1.62 3.52 -2.39 -0.01 1.61 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 40 H 0.19 4.65 7.65 -2.91 -0.02 4.63 16 41 H 0.21 2.64 7.90 -2.91 -0.02 2.62 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.04 1.49 6.51 -2.39 -0.02 1.47 16 44 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.05 0.87 7.71 -2.39 -0.02 0.85 16 49 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -68.91 380.10 0.59 -68.31 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.91 Total: 21.89 kcal Atomic # 6 Polarization: 28.03 SS G_CDS: 8.95 Total: 36.98 kcal Atomic # 7 Polarization: -143.15 SS G_CDS: -10.91 Total: -154.05 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.06 Total: -21.05 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.70 Total: 47.92 kcal Total: -68.91 0.59 -68.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085856565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.682 kcal (2) G-P(sol) polarization free energy of solvation -68.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds