Wall clock time and date at job start Wed Apr 1 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00121 * 2 1 4 4 C 1.53004 * 109.47342 * 96.16436 * 3 2 1 5 5 H 1.09002 * 112.95824 * 50.01205 * 4 3 2 6 6 C 1.53942 * 113.76928 * 181.68704 * 4 3 2 7 7 C 1.53947 * 86.28591 * 137.91176 * 6 4 3 8 8 N 1.47576 * 113.77013 * 278.33321 * 4 3 2 9 9 C 1.36939 * 134.48998 * 41.06129 * 8 4 3 10 10 H 1.07997 * 120.00248 * 334.21167 * 9 8 4 11 11 C 1.38818 * 119.99455 * 154.20843 * 9 8 4 12 12 N 1.31616 * 119.99585 * 171.20658 * 11 9 8 13 13 Si 1.86798 * 120.00251 * 351.21611 * 11 9 8 14 14 H 1.48500 * 109.47369 * 85.30731 * 13 11 9 15 15 H 1.48494 * 109.47028 * 205.31349 * 13 11 9 16 16 H 1.48509 * 109.46896 * 325.30482 * 13 11 9 17 17 C 1.34780 * 119.99579 * 180.02562 * 2 1 3 18 18 O 1.21553 * 119.99873 * 183.05614 * 17 2 1 19 19 C 1.47853 * 120.00139 * 3.05213 * 17 2 1 20 20 C 1.40070 * 120.09412 * 172.72782 * 19 17 2 21 21 C 1.38292 * 117.99091 * 179.73160 * 20 19 17 22 22 C 1.39593 * 118.02940 * 0.53352 * 21 20 19 23 23 N 1.38500 * 120.05117 * 179.74784 * 22 21 20 24 24 C 1.48532 * 111.00089 * 62.57661 * 23 22 21 25 25 C 1.54942 * 103.22609 * 159.72621 * 24 23 22 26 26 C 1.54595 * 102.91920 * 322.58487 * 25 24 23 27 27 C 1.47900 * 111.00371 * 179.97438 * 23 22 21 28 28 N 1.32858 * 119.90525 * 359.71981 * 22 21 20 29 29 N 1.28358 * 122.16011 * 0.02562 * 28 22 21 30 30 H 1.09006 * 109.47044 * 264.97315 * 1 2 3 31 31 H 1.09003 * 109.46871 * 24.96796 * 1 2 3 32 32 H 1.08996 * 109.47400 * 144.96947 * 1 2 3 33 33 H 1.09009 * 109.47026 * 216.16614 * 3 2 1 34 34 H 1.08995 * 109.47082 * 336.16483 * 3 2 1 35 35 H 1.09003 * 113.74169 * 252.25401 * 6 4 3 36 36 H 1.08996 * 113.74156 * 23.45482 * 6 4 3 37 37 H 1.08995 * 113.77117 * 90.69530 * 7 6 4 38 38 H 1.08999 * 113.76200 * 221.98007 * 7 6 4 39 39 H 0.97008 * 119.99865 * 180.02562 * 12 11 9 40 40 H 1.07995 * 121.00482 * 359.97438 * 20 19 17 41 41 H 1.08001 * 120.98477 * 180.25396 * 21 20 19 42 42 H 1.08998 * 110.66703 * 278.15549 * 24 23 22 43 43 H 1.08991 * 110.66771 * 41.29195 * 24 23 22 44 44 H 1.09001 * 110.72293 * 204.22656 * 25 24 23 45 45 H 1.08997 * 110.72661 * 80.94510 * 25 24 23 46 46 H 1.09008 * 110.30871 * 263.03872 * 26 25 24 47 47 H 1.09005 * 110.30585 * 140.87759 * 26 25 24 48 48 H 1.08999 * 109.91886 * 333.50684 * 27 23 22 49 49 H 1.09008 * 109.91767 * 94.79743 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5867 1.6329 1.4342 5 1 3.0729 0.8137 1.9639 6 6 3.3290 2.9763 1.5535 7 6 2.4561 3.2341 2.7951 8 7 1.5012 2.2756 2.2001 9 6 0.1525 2.0671 2.3126 10 1 -0.3914 1.6020 1.5037 11 6 -0.5156 2.4535 3.4664 12 7 -1.8305 2.4145 3.5098 13 14 0.4514 3.0293 4.9573 14 1 0.7508 4.4776 4.8241 15 1 -0.3506 2.8005 6.1859 16 1 1.7228 2.2671 5.0471 17 6 2.1388 -1.1673 -0.0005 18 8 3.3531 -1.1681 0.0556 19 6 1.4011 -2.4468 -0.0693 20 6 2.0980 -3.6519 -0.2234 21 6 1.3649 -4.8234 -0.2769 22 6 -0.0250 -4.7321 -0.1854 23 7 -0.8004 -5.8785 -0.2396 24 6 -0.4971 -6.7806 0.9008 25 6 -1.7531 -7.6843 0.9816 26 6 -2.9036 -6.7079 0.6455 27 6 -2.2382 -5.5519 -0.1240 28 7 -0.6031 -3.5441 -0.0459 29 7 0.0758 -2.4561 0.0090 30 1 -0.3633 -0.0901 1.0238 31 1 -0.3633 0.9317 -0.4338 32 1 -0.3634 -0.8415 -0.5899 33 1 3.0977 1.1685 -0.6065 34 1 1.5651 2.0533 -0.4153 35 1 4.3908 2.8726 1.7773 36 1 3.1337 3.6604 0.7278 37 1 2.9029 2.8857 3.7262 38 1 2.0763 4.2536 2.8609 39 1 -2.2974 2.6849 4.3159 40 1 3.1755 -3.6663 -0.2943 41 1 1.8531 -5.7800 -0.3906 42 1 0.3924 -7.3758 0.6944 43 1 -0.3742 -6.2095 1.8209 44 1 -1.8725 -8.0898 1.9863 45 1 -1.6997 -8.4858 0.2449 46 1 -3.3648 -6.3371 1.5609 47 1 -3.6472 -7.2008 0.0192 48 1 -2.3641 -4.6190 0.4255 49 1 -2.6800 -5.4637 -1.1167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085918077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:50 Heat of formation + Delta-G solvation = 129.705093 kcal Electronic energy + Delta-G solvation = -30850.263945 eV Core-core repulsion = 26816.645829 eV Total energy + Delta-G solvation = -4033.618115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.53898 -39.76763 -38.78535 -37.90432 -35.15380 -33.73715 -33.21884 -32.26187 -30.38406 -29.39344 -28.79016 -27.88416 -26.32673 -24.85184 -24.60608 -23.15235 -22.79069 -21.74750 -21.15306 -20.03719 -19.21177 -17.82706 -17.81107 -17.07226 -16.70853 -16.31527 -15.72553 -15.55639 -15.30829 -14.94282 -14.61650 -14.31056 -14.18800 -13.89612 -13.66390 -13.50255 -13.29997 -12.99354 -12.83667 -12.56639 -12.40637 -12.35764 -12.02662 -11.82405 -11.75031 -11.59638 -11.37948 -11.19583 -10.98158 -10.88524 -10.67485 -10.50934 -10.39159 -10.35351 -10.00179 -9.84659 -9.71905 -9.55688 -9.29787 -8.71849 -8.66218 -8.12035 -6.93826 -5.86725 -3.25443 0.41679 0.66755 2.70120 3.09678 3.29988 3.37927 3.47735 3.49470 3.65621 3.92801 4.14794 4.25288 4.44081 4.51612 4.56719 4.59090 4.74044 4.75145 4.81699 4.94289 5.06059 5.22810 5.32509 5.34487 5.40786 5.44008 5.47944 5.54509 5.60234 5.68225 5.72791 5.80329 5.87512 5.88555 5.95070 6.03096 6.07746 6.25632 6.26466 6.40319 6.41824 6.47699 6.54984 6.62096 6.82036 6.90289 7.14022 7.44046 7.72361 8.30592 8.41508 8.53912 8.76869 9.71033 10.42941 11.29434 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003074 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.153296 B = 9107.326791 C =10498.228068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.572 5.572 3 C 0.120 3.880 4 C 0.126 3.874 5 H 0.052 0.948 6 C -0.142 4.142 7 C 0.095 3.905 8 N -0.616 5.616 9 C -0.234 4.234 10 H 0.110 0.890 11 C 0.020 3.980 12 N -0.919 5.919 13 Si 0.883 3.117 14 H -0.286 1.286 15 H -0.301 1.301 16 H -0.271 1.271 17 C 0.568 3.432 18 O -0.546 6.546 19 C 0.009 3.991 20 C -0.047 4.047 21 C -0.135 4.135 22 C 0.256 3.744 23 N -0.456 5.456 24 C 0.040 3.960 25 C -0.123 4.123 26 C -0.133 4.133 27 C 0.030 3.970 28 N -0.283 5.283 29 N -0.170 5.170 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.261 0.739 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 -18.320 -8.996 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.300 5.300 3 C -0.003 4.003 4 C 0.019 3.981 5 H 0.070 0.930 6 C -0.181 4.181 7 C -0.030 4.030 8 N -0.344 5.344 9 C -0.361 4.361 10 H 0.127 0.873 11 C -0.178 4.178 12 N -0.564 5.564 13 Si 0.713 3.287 14 H -0.213 1.213 15 H -0.229 1.229 16 H -0.197 1.197 17 C 0.353 3.647 18 O -0.424 6.424 19 C -0.139 4.139 20 C -0.076 4.076 21 C -0.166 4.166 22 C 0.018 3.982 23 N -0.175 5.175 24 C -0.085 4.085 25 C -0.161 4.161 26 C -0.171 4.171 27 C -0.096 4.096 28 N -0.131 5.131 29 N -0.016 5.016 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.180 0.820 41 H 0.172 0.828 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.030 -17.722 -9.182 20.188 hybrid contribution 1.444 -0.119 1.620 2.174 sum 4.474 -17.841 -7.561 19.887 Atomic orbital electron populations 1.22704 0.77184 1.02626 1.04745 1.47675 1.08582 1.05180 1.68568 1.21939 0.96454 0.83834 0.98117 1.22629 0.89091 0.94269 0.92086 0.93005 1.23553 0.97514 0.97799 0.99251 1.22827 0.90273 0.94899 0.94977 1.46609 1.02068 1.32949 1.52823 1.19103 0.79099 1.37294 1.00565 0.87283 1.25168 0.95355 1.00175 0.97106 1.69719 1.06026 1.51904 1.28736 0.86818 0.79655 0.78628 0.83556 1.21282 1.22911 1.19684 1.17457 0.86398 0.82621 0.78227 1.90757 1.12680 1.86771 1.52150 1.22854 0.92681 0.95879 1.02525 1.22270 1.02782 0.90542 0.91977 1.21883 0.92672 1.00313 1.01722 1.21681 0.91971 0.92024 0.92498 1.61709 1.05733 1.10022 1.40073 1.23391 1.00034 0.94216 0.90852 1.22512 0.93311 0.97777 1.02483 1.22460 0.98105 0.95832 1.00724 1.23003 0.84823 0.99457 1.02363 1.73418 1.31191 0.94889 1.13574 1.73678 1.05200 1.17338 1.05391 0.89833 0.91499 0.88806 0.90535 0.89450 0.92307 0.90072 0.94085 0.92739 0.92885 0.81979 0.82759 0.88928 0.92234 0.90221 0.90262 0.90777 0.90503 0.89441 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 7.71 59.85 0.46 1.76 16 2 N -0.57 -10.55 2.89 -182.69 -0.53 -11.07 16 3 C 0.12 2.15 5.23 -4.04 -0.02 2.13 16 4 C 0.13 2.56 4.49 -66.87 -0.30 2.26 16 5 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 6 C -0.14 -2.49 7.86 -25.79 -0.20 -2.69 16 7 C 0.10 2.04 5.88 -2.85 -0.02 2.03 16 8 N -0.62 -14.83 3.24 -169.73 -0.55 -15.38 16 9 C -0.23 -6.44 10.44 -15.06 -0.16 -6.60 16 10 H 0.11 3.03 4.38 -52.49 -0.23 2.80 16 11 C 0.02 0.58 5.50 -17.43 -0.10 0.49 16 12 N -0.92 -28.27 13.97 55.49 0.78 -27.49 16 13 Si 0.88 23.07 25.33 -169.99 -4.31 18.77 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.30 -8.01 7.11 56.52 0.40 -7.60 16 16 H -0.27 -7.00 5.94 56.52 0.34 -6.66 16 17 C 0.57 10.29 7.60 -12.32 -0.09 10.20 16 18 O -0.55 -10.58 16.12 5.32 0.09 -10.49 16 19 C 0.01 0.14 6.71 -82.85 -0.56 -0.42 16 20 C -0.05 -0.58 9.71 -38.87 -0.38 -0.96 16 21 C -0.14 -1.43 9.56 -39.06 -0.37 -1.80 16 22 C 0.26 3.16 6.27 -154.94 -0.97 2.19 16 23 N -0.46 -4.63 5.29 -169.13 -0.89 -5.53 16 24 C 0.04 0.31 6.06 -1.90 -0.01 0.30 16 25 C -0.12 -0.76 7.06 -24.87 -0.18 -0.93 16 26 C -0.13 -0.96 6.93 -25.38 -0.18 -1.14 16 27 C 0.03 0.30 6.35 -2.76 -0.02 0.28 16 28 N -0.28 -4.30 9.32 31.21 0.29 -4.01 16 29 N -0.17 -2.83 7.19 33.32 0.24 -2.60 16 30 H 0.08 1.84 6.59 -51.93 -0.34 1.50 16 31 H 0.07 1.21 7.42 -51.93 -0.39 0.83 16 32 H 0.09 1.62 5.09 -57.54 -0.29 1.33 16 33 H 0.08 1.25 7.66 -51.92 -0.40 0.85 16 34 H 0.09 1.54 7.78 -51.93 -0.40 1.14 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.04 0.91 6.33 -51.93 -0.33 0.58 16 38 H 0.05 1.18 7.66 -51.93 -0.40 0.78 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.16 1.74 7.73 -52.49 -0.41 1.33 16 41 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.52 7.99 -51.93 -0.42 0.11 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 1.06 6.50 -51.93 -0.34 0.72 16 49 H 0.09 0.84 8.14 -51.92 -0.42 0.41 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -33.75 381.60 -9.58 -43.33 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.36 Total: 1.63 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -3.08 Total: 7.08 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -0.67 Total: -66.08 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.31 Total: 18.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.75 -9.58 -43.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085918077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.040 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds