Wall clock time and date at job start Wed Apr 1 2020 02:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39888 * 125.74869 * 2 1 4 4 C 1.30288 * 109.23412 * 180.02562 * 3 2 1 5 5 C 1.41485 * 108.18912 * 0.02562 * 4 3 2 6 6 C 1.46775 * 126.51886 * 179.97438 * 5 4 3 7 7 O 1.21688 * 119.99794 * 173.52559 * 6 5 4 8 8 N 1.34769 * 119.99831 * 353.52778 * 6 5 4 9 9 C 1.48365 * 126.12488 * 184.65157 * 8 6 5 10 10 C 1.51322 * 103.19633 * 204.85352 * 9 8 6 11 11 H 1.09004 * 109.62497 * 70.95616 * 10 9 8 12 12 C 1.56075 * 98.77876 * 316.43253 * 10 9 8 13 13 H 1.08993 * 106.22077 * 295.38313 * 12 10 9 14 14 C 1.49335 * 125.94937 * 4.48789 * 8 6 5 15 15 C 1.50455 * 106.04445 * 181.82023 * 12 10 9 16 16 H 1.08996 * 114.87703 * 210.55260 * 15 12 10 17 17 C 1.56823 * 102.19409 * 85.59059 * 15 12 10 18 18 C 1.54008 * 106.15459 * 324.99563 * 17 15 12 19 19 C 1.51457 * 123.36982 * 202.40313 * 10 9 8 20 20 H 1.08999 * 113.38925 * 320.02782 * 19 10 9 21 21 C 1.56616 * 102.33552 * 196.14425 * 19 10 9 22 22 N 1.48596 * 104.49207 * 322.37823 * 21 19 10 23 23 C 1.36936 * 122.46842 * 144.76640 * 22 21 19 24 24 H 1.07994 * 120.00137 * 204.60610 * 23 22 21 25 25 C 1.38818 * 119.99941 * 24.60931 * 23 22 21 26 26 N 1.31620 * 120.00015 * 5.92498 * 25 23 22 27 27 Si 1.86800 * 119.99869 * 185.92937 * 25 23 22 28 28 H 1.48497 * 109.47213 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47318 * 120.00019 * 27 25 23 30 30 H 1.48501 * 109.46947 * 239.99892 * 27 25 23 31 31 C 1.34855 * 125.74544 * 180.33497 * 2 1 3 32 32 N 1.38012 * 126.44540 * 359.95731 * 31 2 1 33 33 H 1.09003 * 109.47200 * 89.97233 * 1 2 3 34 34 H 1.09002 * 109.47396 * 209.97063 * 1 2 3 35 35 H 1.08999 * 109.47150 * 329.97844 * 1 2 3 36 36 H 1.07998 * 125.90481 * 180.02562 * 4 3 2 37 37 H 1.09001 * 110.84545 * 86.21106 * 9 8 6 38 38 H 1.08999 * 110.14524 * 323.16971 * 9 8 6 39 39 H 1.09002 * 110.39521 * 66.69987 * 14 8 6 40 40 H 1.09003 * 110.39439 * 304.30507 * 14 8 6 41 41 H 1.09005 * 110.11120 * 205.83849 * 17 15 12 42 42 H 1.08995 * 110.11171 * 84.15662 * 17 15 12 43 43 H 1.09001 * 109.46650 * 203.33787 * 18 17 15 44 44 H 1.09007 * 109.46259 * 83.37166 * 18 17 15 45 45 H 1.08999 * 110.42810 * 81.12239 * 21 19 10 46 46 H 1.09002 * 110.42135 * 203.64002 * 21 19 10 47 47 H 0.96994 * 119.99694 * 180.02562 * 26 25 23 48 48 H 0.97001 * 119.99548 * 180.18141 * 32 31 2 49 49 H 0.96998 * 119.99894 * 0.18390 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1353 0.0000 4 6 3.5314 0.7650 -0.0006 5 6 3.5727 -0.6493 -0.0015 6 6 4.7773 -1.4879 -0.0029 7 8 4.6784 -2.6950 0.1152 8 7 5.9928 -0.9210 -0.1349 9 6 7.2854 -1.6401 -0.2509 10 6 8.2906 -0.6271 0.2523 11 1 8.1777 -0.5032 1.3293 12 6 7.7417 0.6372 -0.4800 13 1 7.8669 0.4498 -1.5464 14 6 6.2751 0.5443 -0.1937 15 6 8.6725 1.7632 -0.1200 16 1 8.2080 2.7486 -0.0849 17 6 9.8080 1.6093 -1.1906 18 6 9.9642 0.0969 -1.4354 19 6 9.7622 -0.6659 -0.1040 20 1 10.1780 -1.6734 -0.1162 21 6 10.3917 0.2842 0.9702 22 7 9.3955 1.3750 1.1314 23 6 9.1567 1.9803 2.3362 24 1 8.2052 2.4561 2.5223 25 6 10.1376 1.9823 3.3185 26 7 11.3359 1.5068 3.0529 27 14 9.7570 2.6599 5.0171 28 1 8.3492 3.1307 5.0582 29 1 9.9522 1.5926 6.0310 30 1 10.6671 3.7955 5.3124 31 6 2.2528 -1.0945 -0.0064 32 7 1.8307 -2.4085 -0.0133 33 1 -0.3634 0.0005 -1.0277 34 1 -0.3634 -0.8902 0.5134 35 1 -0.3633 0.8898 0.5142 36 1 4.3873 1.4236 -0.0003 37 1 7.4898 -1.9056 -1.2882 38 1 7.2797 -2.5270 0.3826 39 1 6.0443 1.0142 0.7624 40 1 5.7014 1.0098 -0.9950 41 1 10.7408 2.0256 -0.8101 42 1 9.5220 2.1110 -2.1151 43 1 10.9622 -0.1073 -1.8231 44 1 9.2190 -0.2327 -2.1595 45 1 10.5309 -0.2460 1.9123 46 1 11.3406 0.6853 0.6139 47 1 12.0211 1.5080 3.7394 48 1 2.4822 -3.1271 -0.0149 49 1 0.8826 -2.6133 -0.0165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087352822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:48 Heat of formation + Delta-G solvation = 124.239522 kcal Electronic energy + Delta-G solvation = -31914.566991 eV Core-core repulsion = 27880.711870 eV Total energy + Delta-G solvation = -4033.855120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46357 -40.83886 -38.46449 -35.97633 -34.91041 -33.28649 -33.07010 -31.07548 -30.27235 -29.82032 -28.59789 -27.84931 -26.64629 -25.31100 -24.05332 -22.03565 -21.74575 -21.26004 -20.44543 -20.25773 -19.34405 -17.69152 -17.27563 -16.85556 -16.74027 -16.26857 -15.88946 -15.69851 -14.96922 -14.75561 -14.54842 -14.48504 -14.14145 -13.89120 -13.35798 -13.16091 -13.11307 -13.01025 -12.64133 -12.44463 -12.25782 -12.07248 -11.51071 -11.36547 -11.24293 -11.04353 -10.97898 -10.90168 -10.78661 -10.62865 -10.51823 -10.38127 -10.08572 -10.05130 -9.64040 -9.54867 -9.12999 -9.10753 -8.92143 -8.48405 -8.35191 -7.83991 -6.67253 -5.73652 -3.14063 1.79659 2.11196 2.30388 3.30335 3.40272 3.48140 3.49069 3.51419 3.72777 4.28294 4.49261 4.73719 4.80485 4.88170 5.01641 5.05027 5.14349 5.33882 5.39359 5.42092 5.42906 5.58502 5.62383 5.65730 5.75091 5.80050 5.92183 5.98388 5.99990 6.17314 6.21471 6.26129 6.31466 6.41352 6.42810 6.51670 6.57775 6.62803 6.69837 6.82587 6.97999 7.13176 7.14892 7.21435 7.27417 7.45833 7.67743 7.72939 7.83748 7.94349 8.35642 8.57250 9.21495 9.81887 10.46459 11.36505 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012587 B = 0.003454 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.009983 B = 8105.346148 C = 9144.605161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.404 5.404 3 N -0.309 5.309 4 C 0.105 3.895 5 C -0.362 4.362 6 C 0.619 3.381 7 O -0.579 6.579 8 N -0.614 5.614 9 C 0.123 3.877 10 C -0.091 4.091 11 H 0.098 0.902 12 C -0.141 4.141 13 H 0.067 0.933 14 C 0.118 3.882 15 C 0.183 3.817 16 H 0.083 0.917 17 C -0.131 4.131 18 C -0.110 4.110 19 C -0.109 4.109 20 H 0.076 0.924 21 C 0.193 3.807 22 N -0.595 5.595 23 C -0.240 4.240 24 H 0.068 0.932 25 C 0.002 3.998 26 N -0.912 5.912 27 Si 0.902 3.098 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.291 1.291 31 C 0.429 3.571 32 N -0.832 5.832 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.200 0.800 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.252 0.748 48 H 0.431 0.569 49 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.580 -5.024 -10.143 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.192 5.192 3 N -0.128 5.128 4 C -0.084 4.084 5 C -0.381 4.381 6 C 0.411 3.589 7 O -0.461 6.461 8 N -0.346 5.346 9 C 0.001 3.999 10 C -0.111 4.111 11 H 0.116 0.884 12 C -0.162 4.162 13 H 0.085 0.915 14 C -0.004 4.004 15 C 0.076 3.924 16 H 0.101 0.899 17 C -0.170 4.170 18 C -0.148 4.148 19 C -0.129 4.129 20 H 0.095 0.905 21 C 0.068 3.932 22 N -0.319 5.319 23 C -0.370 4.370 24 H 0.086 0.914 25 C -0.196 4.196 26 N -0.558 5.558 27 Si 0.732 3.268 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.218 1.218 31 C 0.195 3.805 32 N -0.382 5.382 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.216 0.784 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.267 0.733 49 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -17.479 -4.627 -9.908 20.618 hybrid contribution 0.151 -0.641 0.927 1.138 sum -17.328 -5.269 -8.980 20.216 Atomic orbital electron populations 1.21769 0.74501 1.04410 1.03180 1.48199 1.06313 1.02503 1.62209 1.77163 1.01908 1.05140 1.28590 1.24541 0.95386 0.93996 0.94491 1.19248 0.90668 0.93742 1.34436 1.16531 0.81098 0.86073 0.75151 1.90642 1.86405 1.14814 1.54287 1.49008 1.05537 1.07639 1.72413 1.21476 0.82452 0.95757 1.00186 1.21796 0.93686 0.93094 1.02477 0.88384 1.22435 0.92847 1.00137 1.00774 0.91450 1.21485 0.96891 0.80918 1.01091 1.21166 0.90394 0.93993 0.86881 0.89918 1.23066 1.00736 0.95316 0.97845 1.22124 0.99843 0.95749 0.97038 1.22434 0.94394 0.98861 0.97219 0.90543 1.21824 0.90028 0.86321 0.94988 1.45447 1.44475 1.38833 1.03124 1.19181 0.97057 1.30507 0.90242 0.91428 1.25021 0.95019 1.00546 0.99037 1.69939 1.02529 1.50577 1.32722 0.86216 0.77558 0.78345 0.84653 1.20392 1.21841 1.21820 1.18015 0.89495 0.81862 0.91156 1.41746 1.11011 1.02770 1.82696 0.90903 0.90274 0.88742 0.78361 0.92320 0.91029 0.90852 0.91344 0.90816 0.93364 0.93084 0.93086 0.91201 0.94862 0.93793 0.73263 0.77439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.24 59.85 0.67 1.33 16 2 N -0.40 -4.66 4.00 -66.82 -0.27 -4.93 16 3 N -0.31 -4.30 12.47 30.88 0.38 -3.91 16 4 C 0.11 1.47 10.49 -16.97 -0.18 1.29 16 5 C -0.36 -5.43 6.11 -104.82 -0.64 -6.07 16 6 C 0.62 10.54 7.84 -12.81 -0.10 10.44 16 7 O -0.58 -10.83 15.45 5.20 0.08 -10.75 16 8 N -0.61 -10.00 3.40 -174.22 -0.59 -10.59 16 9 C 0.12 2.00 6.66 -3.86 -0.03 1.98 16 10 C -0.09 -1.59 2.30 -90.60 -0.21 -1.80 16 11 H 0.10 2.10 7.03 -51.93 -0.37 1.74 16 12 C -0.14 -2.26 2.21 -91.87 -0.20 -2.46 16 13 H 0.07 1.02 5.20 -51.93 -0.27 0.75 16 14 C 0.12 1.75 4.87 -4.09 -0.02 1.73 16 15 C 0.18 3.36 4.71 -65.38 -0.31 3.06 16 16 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 17 C -0.13 -2.20 5.53 -24.14 -0.13 -2.34 16 18 C -0.11 -1.72 5.29 -25.28 -0.13 -1.86 16 19 C -0.11 -1.91 4.34 -88.52 -0.38 -2.29 16 20 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 21 C 0.19 4.30 3.96 -0.93 0.00 4.29 16 22 N -0.60 -13.57 1.91 -158.42 -0.30 -13.87 16 23 C -0.24 -6.23 9.97 -15.06 -0.15 -6.38 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C 0.00 0.04 5.29 -17.43 -0.09 -0.05 16 26 N -0.91 -25.66 10.84 55.49 0.60 -25.05 16 27 Si 0.90 21.59 29.56 -169.99 -5.02 16.57 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 C 0.43 5.43 7.98 -153.77 -1.23 4.20 16 32 N -0.83 -7.92 9.02 31.40 0.28 -7.64 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.31 7.47 -51.93 -0.39 -0.08 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.20 2.47 4.54 -52.49 -0.24 2.24 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 39 H 0.07 1.15 7.42 -51.93 -0.39 0.77 16 40 H 0.07 0.87 6.54 -51.93 -0.34 0.53 16 41 H 0.07 1.43 7.14 -51.93 -0.37 1.06 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.73 6.50 -51.92 -0.34 0.39 16 45 H 0.07 1.78 6.92 -51.93 -0.36 1.42 16 46 H 0.03 0.81 7.07 -51.93 -0.37 0.44 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.43 4.68 7.05 -40.82 -0.29 4.40 16 49 H 0.40 2.27 8.05 -40.82 -0.33 1.94 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -32.31 368.84 -9.37 -41.68 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.96 Total: 7.86 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -3.14 Total: 5.07 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: 0.11 Total: -65.99 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.31 -9.37 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087352822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.924 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds