Wall clock time and date at job start Wed Apr 1 2020 02:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39888 * 125.74869 * 2 1 4 4 C 1.30288 * 109.23412 * 180.02562 * 3 2 1 5 5 C 1.41485 * 108.18912 * 0.02562 * 4 3 2 6 6 C 1.46775 * 126.51886 * 179.97438 * 5 4 3 7 7 O 1.21688 * 119.99794 * 173.52559 * 6 5 4 8 8 N 1.34769 * 119.99831 * 353.52778 * 6 5 4 9 9 C 1.48365 * 126.12488 * 184.65157 * 8 6 5 10 10 C 1.51322 * 103.19633 * 204.85352 * 9 8 6 11 11 H 1.09004 * 109.62497 * 70.95616 * 10 9 8 12 12 C 1.56075 * 98.77876 * 316.43253 * 10 9 8 13 13 H 1.08993 * 106.22077 * 295.38313 * 12 10 9 14 14 C 1.49335 * 125.94937 * 4.48789 * 8 6 5 15 15 C 1.50455 * 106.04445 * 181.82023 * 12 10 9 16 16 H 1.08996 * 114.87703 * 210.55260 * 15 12 10 17 17 C 1.56823 * 102.19409 * 85.59059 * 15 12 10 18 18 C 1.54008 * 106.15459 * 324.99563 * 17 15 12 19 19 C 1.51457 * 123.36982 * 202.40313 * 10 9 8 20 20 H 1.08999 * 113.38925 * 320.02782 * 19 10 9 21 21 C 1.56616 * 102.33552 * 196.14425 * 19 10 9 22 22 N 1.48596 * 104.49207 * 322.37823 * 21 19 10 23 23 C 1.36936 * 122.46842 * 144.76640 * 22 21 19 24 24 H 1.07994 * 120.00137 * 204.60610 * 23 22 21 25 25 C 1.38818 * 119.99941 * 24.60931 * 23 22 21 26 26 N 1.31620 * 120.00015 * 5.92498 * 25 23 22 27 27 Si 1.86800 * 119.99869 * 185.92937 * 25 23 22 28 28 H 1.48497 * 109.47213 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47318 * 120.00019 * 27 25 23 30 30 H 1.48501 * 109.46947 * 239.99892 * 27 25 23 31 31 C 1.34855 * 125.74544 * 180.33497 * 2 1 3 32 32 N 1.38012 * 126.44540 * 359.95731 * 31 2 1 33 33 H 1.09003 * 109.47200 * 89.97233 * 1 2 3 34 34 H 1.09002 * 109.47396 * 209.97063 * 1 2 3 35 35 H 1.08999 * 109.47150 * 329.97844 * 1 2 3 36 36 H 1.07998 * 125.90481 * 180.02562 * 4 3 2 37 37 H 1.09001 * 110.84545 * 86.21106 * 9 8 6 38 38 H 1.08999 * 110.14524 * 323.16971 * 9 8 6 39 39 H 1.09002 * 110.39521 * 66.69987 * 14 8 6 40 40 H 1.09003 * 110.39439 * 304.30507 * 14 8 6 41 41 H 1.09005 * 110.11120 * 205.83849 * 17 15 12 42 42 H 1.08995 * 110.11171 * 84.15662 * 17 15 12 43 43 H 1.09001 * 109.46650 * 203.33787 * 18 17 15 44 44 H 1.09007 * 109.46259 * 83.37166 * 18 17 15 45 45 H 1.08999 * 110.42810 * 81.12239 * 21 19 10 46 46 H 1.09002 * 110.42135 * 203.64002 * 21 19 10 47 47 H 0.96994 * 119.99694 * 180.02562 * 26 25 23 48 48 H 0.97001 * 119.99548 * 180.18141 * 32 31 2 49 49 H 0.96998 * 119.99894 * 0.18390 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1353 0.0000 4 6 3.5314 0.7650 -0.0006 5 6 3.5727 -0.6493 -0.0015 6 6 4.7773 -1.4879 -0.0029 7 8 4.6784 -2.6950 0.1152 8 7 5.9928 -0.9210 -0.1349 9 6 7.2854 -1.6401 -0.2509 10 6 8.2906 -0.6271 0.2523 11 1 8.1777 -0.5032 1.3293 12 6 7.7417 0.6372 -0.4800 13 1 7.8669 0.4498 -1.5464 14 6 6.2751 0.5443 -0.1937 15 6 8.6725 1.7632 -0.1200 16 1 8.2080 2.7486 -0.0849 17 6 9.8080 1.6093 -1.1906 18 6 9.9642 0.0969 -1.4354 19 6 9.7622 -0.6659 -0.1040 20 1 10.1780 -1.6734 -0.1162 21 6 10.3917 0.2842 0.9702 22 7 9.3955 1.3750 1.1314 23 6 9.1567 1.9803 2.3362 24 1 8.2052 2.4561 2.5223 25 6 10.1376 1.9823 3.3185 26 7 11.3359 1.5068 3.0529 27 14 9.7570 2.6599 5.0171 28 1 8.3492 3.1307 5.0582 29 1 9.9522 1.5926 6.0310 30 1 10.6671 3.7955 5.3124 31 6 2.2528 -1.0945 -0.0064 32 7 1.8307 -2.4085 -0.0133 33 1 -0.3634 0.0005 -1.0277 34 1 -0.3634 -0.8902 0.5134 35 1 -0.3633 0.8898 0.5142 36 1 4.3873 1.4236 -0.0003 37 1 7.4898 -1.9056 -1.2882 38 1 7.2797 -2.5270 0.3826 39 1 6.0443 1.0142 0.7624 40 1 5.7014 1.0098 -0.9950 41 1 10.7408 2.0256 -0.8101 42 1 9.5220 2.1110 -2.1151 43 1 10.9622 -0.1073 -1.8231 44 1 9.2190 -0.2327 -2.1595 45 1 10.5309 -0.2460 1.9123 46 1 11.3406 0.6853 0.6139 47 1 12.0211 1.5080 3.7394 48 1 2.4822 -3.1271 -0.0149 49 1 0.8826 -2.6133 -0.0165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087352822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:47 Heat of formation + Delta-G solvation = 103.528176 kcal Electronic energy + Delta-G solvation = -31915.465102 eV Core-core repulsion = 27880.711870 eV Total energy + Delta-G solvation = -4034.753232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.58414 -42.09915 -39.75926 -37.32939 -35.85152 -34.97291 -34.04819 -32.55126 -31.64840 -31.52341 -29.67504 -28.99242 -27.58618 -27.09108 -25.41301 -23.51700 -23.12169 -22.44787 -21.65660 -21.60067 -20.46189 -19.07415 -18.49720 -18.33691 -17.94213 -17.37802 -16.94791 -16.80751 -16.59557 -16.03090 -15.99457 -15.89228 -15.63271 -14.99425 -14.51457 -14.43519 -14.23256 -14.06067 -13.83243 -13.69828 -13.53469 -13.37747 -13.06293 -12.91107 -12.73536 -12.49869 -12.34124 -12.26358 -12.22794 -12.17176 -12.05183 -11.88773 -11.82067 -11.70428 -11.16858 -10.84861 -10.57789 -10.52321 -10.37956 -9.99375 -9.60369 -8.83554 -8.58356 -7.78151 -5.17822 0.81098 1.23591 1.29965 1.45489 1.48149 1.56279 2.08653 2.53646 2.54119 2.75916 3.36899 3.40549 3.50279 3.56112 3.91456 3.96907 4.04068 4.16499 4.24354 4.31452 4.38826 4.39775 4.40151 4.50868 4.51632 4.59276 4.64723 4.66592 4.73572 4.78272 4.93182 4.96231 5.02388 5.09154 5.18210 5.25458 5.32804 5.38204 5.43422 5.50626 5.57640 5.62612 5.66587 5.76565 5.77981 5.91896 6.23626 6.39417 6.50409 6.64676 6.90363 7.21237 7.31346 7.88832 8.50682 9.30108 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012587 B = 0.003454 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.009983 B = 8105.346148 C = 9144.605161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.400 5.400 3 N -0.327 5.327 4 C 0.102 3.898 5 C -0.393 4.393 6 C 0.612 3.388 7 O -0.605 6.605 8 N -0.618 5.618 9 C 0.130 3.870 10 C -0.083 4.083 11 H 0.050 0.950 12 C -0.130 4.130 13 H 0.094 0.906 14 C 0.123 3.877 15 C 0.175 3.825 16 H 0.088 0.912 17 C -0.125 4.125 18 C -0.103 4.103 19 C -0.097 4.097 20 H 0.091 0.909 21 C 0.200 3.800 22 N -0.610 5.610 23 C -0.236 4.236 24 H 0.068 0.932 25 C -0.055 4.055 26 N -0.942 5.942 27 Si 0.956 3.044 28 H -0.269 1.269 29 H -0.300 1.300 30 H -0.294 1.294 31 C 0.432 3.568 32 N -0.816 5.816 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.207 0.793 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.025 0.975 46 H 0.007 0.993 47 H 0.244 0.756 48 H 0.427 0.573 49 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.403 -5.137 -12.558 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.188 5.188 3 N -0.146 5.146 4 C -0.087 4.087 5 C -0.412 4.412 6 C 0.406 3.594 7 O -0.489 6.489 8 N -0.349 5.349 9 C 0.008 3.992 10 C -0.103 4.103 11 H 0.069 0.931 12 C -0.150 4.150 13 H 0.112 0.888 14 C 0.002 3.998 15 C 0.069 3.931 16 H 0.106 0.894 17 C -0.163 4.163 18 C -0.140 4.140 19 C -0.117 4.117 20 H 0.109 0.891 21 C 0.076 3.924 22 N -0.334 5.334 23 C -0.367 4.367 24 H 0.086 0.914 25 C -0.250 4.250 26 N -0.590 5.590 27 Si 0.787 3.213 28 H -0.193 1.193 29 H -0.227 1.227 30 H -0.221 1.221 31 C 0.194 3.806 32 N -0.367 5.367 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.223 0.777 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.043 0.957 46 H 0.025 0.975 47 H 0.053 0.947 48 H 0.262 0.738 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -20.376 -4.724 -12.353 24.292 hybrid contribution 0.894 -0.632 1.688 2.012 sum -19.482 -5.356 -10.665 22.847 Atomic orbital electron populations 1.22222 0.71607 1.06145 1.04963 1.48493 1.07739 1.01403 1.61207 1.77083 1.02106 1.06555 1.28833 1.24632 0.95836 0.93737 0.94508 1.19256 0.90933 0.94136 1.36905 1.16869 0.81695 0.86053 0.74733 1.90615 1.86820 1.15858 1.55625 1.49040 1.05393 1.08086 1.72427 1.21377 0.82115 0.94670 1.01009 1.21538 0.94083 0.94891 0.99806 0.93116 1.22245 0.93061 0.97903 1.01796 0.88826 1.21513 0.96372 0.80350 1.01604 1.21434 0.91287 0.95110 0.85255 0.89401 1.22965 0.98366 0.96484 0.98480 1.22074 1.01609 0.94346 0.95942 1.22330 0.93845 0.98770 0.96722 0.89102 1.21501 0.89605 0.86931 0.94397 1.45654 1.44663 1.39115 1.03977 1.19484 0.96663 1.28884 0.91659 0.91403 1.25645 0.95216 1.02045 1.02055 1.70111 1.03235 1.52584 1.33100 0.85340 0.77620 0.77234 0.81151 1.19301 1.22749 1.22137 1.18077 0.89209 0.83038 0.90246 1.41713 1.12162 1.01463 1.81334 0.89062 0.87489 0.88188 0.77663 0.89984 0.92520 0.92206 0.88265 0.94115 0.89743 0.91920 0.90046 0.95657 0.97515 0.94691 0.73754 0.75172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.24 127.77 1.44 2.29 16 2 N -0.40 -8.23 4.00 -365.30 -1.46 -9.69 16 3 N -0.33 -8.48 12.47 -56.23 -0.70 -9.18 16 4 C 0.10 2.71 10.49 85.72 0.90 3.60 16 5 C -0.39 -11.26 6.11 -19.99 -0.12 -11.38 16 6 C 0.61 20.23 7.84 86.48 0.68 20.91 16 7 O -0.60 -22.23 15.45 -4.31 -0.07 -22.30 16 8 N -0.62 -19.28 3.40 -823.33 -2.80 -22.08 16 9 C 0.13 4.05 6.66 85.47 0.57 4.62 16 10 C -0.08 -2.87 2.30 -10.78 -0.02 -2.89 16 11 H 0.05 2.25 7.03 -2.38 -0.02 2.23 16 12 C -0.13 -3.86 2.21 -11.60 -0.03 -3.89 16 13 H 0.09 2.39 5.20 -2.39 -0.01 2.37 16 14 C 0.12 3.42 4.87 84.78 0.41 3.83 16 15 C 0.17 6.22 4.71 44.89 0.21 6.43 16 16 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 17 C -0.12 -3.92 5.53 32.27 0.18 -3.74 16 18 C -0.10 -2.91 5.29 31.54 0.17 -2.74 16 19 C -0.10 -3.33 4.34 -9.43 -0.04 -3.37 16 20 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 21 C 0.20 9.33 3.96 87.24 0.35 9.67 16 22 N -0.61 -28.53 1.91 -655.11 -1.25 -29.78 16 23 C -0.24 -12.63 9.97 84.04 0.84 -11.79 16 24 H 0.07 3.55 7.83 -2.91 -0.02 3.52 16 25 C -0.06 -3.10 5.29 84.86 0.45 -2.65 16 26 N -0.94 -55.83 10.84 21.65 0.23 -55.59 16 27 Si 0.96 45.96 29.56 68.60 2.03 47.99 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 29 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 30 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 31 C 0.43 10.03 7.98 132.69 1.06 11.09 16 32 N -0.82 -13.64 9.02 -54.57 -0.49 -14.13 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.41 7.47 -2.39 -0.02 0.39 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.21 4.80 4.54 -2.91 -0.01 4.79 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 1.93 8.02 -2.39 -0.02 1.91 16 39 H 0.06 1.84 7.42 -2.39 -0.02 1.82 16 40 H 0.10 2.19 6.54 -2.39 -0.02 2.18 16 41 H 0.04 1.56 7.14 -2.38 -0.02 1.55 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.89 6.50 -2.38 -0.02 1.88 16 45 H 0.02 1.37 6.92 -2.39 -0.02 1.36 16 46 H 0.01 0.35 7.07 -2.39 -0.02 0.33 16 47 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.43 8.56 7.05 -92.71 -0.65 7.90 16 49 H 0.42 3.47 8.05 -92.71 -0.75 2.72 16 Total: -1.00 -74.29 368.84 2.13 -72.15 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.39 Total: 22.62 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 7.03 Total: 20.00 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -6.47 Total: -140.47 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.07 Total: -22.30 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -74.29 2.13 -72.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087352822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.682 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds