Wall clock time and date at job start Wed Apr 1 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39887 * 125.74981 * 2 1 4 4 C 1.30288 * 109.23620 * 179.97438 * 3 2 1 5 5 C 1.41483 * 108.18631 * 0.02562 * 4 3 2 6 6 C 1.46771 * 126.51795 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00044 * 212.69459 * 6 5 4 8 8 N 1.34773 * 120.00038 * 32.69163 * 6 5 4 9 9 C 1.48145 * 127.83388 * 175.48227 * 8 6 5 10 10 C 1.54365 * 104.62160 * 219.47373 * 9 8 6 11 11 H 1.08993 * 110.91818 * 216.49141 * 10 9 8 12 12 C 1.54468 * 105.07652 * 336.39941 * 10 9 8 13 13 H 1.08999 * 110.97866 * 239.95778 * 12 10 9 14 14 C 1.48145 * 127.83685 * 355.50778 * 8 6 5 15 15 C 1.53019 * 109.77288 * 116.52471 * 12 10 9 16 16 H 1.08998 * 109.64798 * 180.60306 * 15 12 10 17 17 C 1.53080 * 109.15648 * 300.72806 * 15 12 10 18 18 C 1.52910 * 110.00358 * 59.24504 * 17 15 12 19 19 C 1.53217 * 108.99424 * 94.16976 * 10 9 8 20 20 H 1.09001 * 110.51703 * 67.34115 * 19 10 9 21 21 N 1.47652 * 108.06777 * 188.97126 * 19 10 9 22 22 C 1.36935 * 122.03851 * 238.60317 * 21 19 10 23 23 H 1.08002 * 120.00584 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99920 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00105 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00075 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46954 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47256 * 120.00202 * 26 24 22 29 29 H 1.48504 * 109.46860 * 240.00139 * 26 24 22 30 30 C 1.49585 * 115.72849 * 58.23309 * 21 19 10 31 31 C 1.34851 * 125.74580 * 180.25358 * 2 1 3 32 32 N 1.38007 * 126.44310 * 0.02608 * 31 2 1 33 33 H 1.09002 * 109.47397 * 90.02244 * 1 2 3 34 34 H 1.08996 * 109.47486 * 210.02448 * 1 2 3 35 35 H 1.09000 * 109.47080 * 330.02381 * 1 2 3 36 36 H 1.08000 * 125.90860 * 180.02562 * 4 3 2 37 37 H 1.09000 * 110.41270 * 338.25908 * 9 8 6 38 38 H 1.09007 * 110.41034 * 100.69463 * 9 8 6 39 39 H 1.08994 * 110.41706 * 259.11086 * 14 8 6 40 40 H 1.09002 * 110.41230 * 21.44187 * 14 8 6 41 41 H 1.09006 * 109.37822 * 179.40877 * 17 15 12 42 42 H 1.09002 * 109.37799 * 299.18659 * 17 15 12 43 43 H 1.08993 * 109.45037 * 120.89454 * 18 17 15 44 44 H 1.09002 * 109.44357 * 240.83059 * 18 17 15 45 45 H 0.97001 * 120.00271 * 179.97438 * 25 24 22 46 46 H 1.09005 * 109.81209 * 240.99085 * 30 21 19 47 47 H 1.08998 * 110.13694 * 119.63900 * 30 21 19 48 48 H 0.97001 * 119.99940 * 180.18223 * 32 31 2 49 49 H 0.96999 * 120.00268 * 0.18464 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1353 0.0000 4 6 3.5314 0.7650 0.0006 5 6 3.5727 -0.6493 0.0003 6 6 4.7772 -1.4879 0.0003 7 8 4.7699 -2.5633 -0.5692 8 7 5.8915 -1.0668 0.6308 9 6 7.1629 -1.8037 0.8183 10 6 7.6085 -1.4530 2.2540 11 1 8.6926 -1.3573 2.3126 12 6 6.9184 -0.1080 2.5716 13 1 7.6539 0.6654 2.7925 14 6 6.1225 0.2376 1.2939 15 6 5.9385 -0.2904 3.7327 16 1 5.4449 0.6572 3.9480 17 6 4.8924 -1.3395 3.3470 18 6 5.5776 -2.6687 3.0280 19 6 7.1041 -2.5375 3.2117 20 1 7.6111 -3.4830 3.0192 21 7 7.3484 -2.0780 4.5934 22 6 8.1197 -2.7924 5.4709 23 1 8.5706 -3.7231 5.1596 24 6 8.3220 -2.3204 6.7605 25 7 7.7721 -1.1864 7.1401 26 14 9.3735 -3.2953 7.9578 27 1 9.8710 -4.5255 7.2914 28 1 10.5264 -2.4664 8.3926 29 1 8.5584 -3.6692 9.1415 30 6 6.7072 -0.7798 4.9690 31 6 2.2528 -1.0945 -0.0048 32 7 1.8306 -2.4084 -0.0112 33 1 -0.3634 -0.0004 -1.0277 34 1 -0.3634 -0.8897 0.5142 35 1 -0.3633 0.8902 0.5135 36 1 4.3873 1.4236 0.0011 37 1 6.9979 -2.8770 0.7231 38 1 7.9073 -1.4673 0.0966 39 1 6.7060 0.8942 0.6486 40 1 5.1729 0.7060 1.5526 41 1 4.1985 -1.4799 4.1759 42 1 4.3435 -0.9974 2.4697 43 1 5.1991 -3.4418 3.6966 44 1 5.3668 -2.9469 1.9954 45 1 7.9131 -0.8567 8.0414 46 1 7.4737 -0.0546 5.2424 47 1 6.0191 -0.9280 5.8012 48 1 2.4821 -3.1271 -0.0116 49 1 0.8825 -2.6132 -0.0152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087352824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:54 Heat of formation + Delta-G solvation = 92.925351 kcal Electronic energy + Delta-G solvation = -32771.067665 eV Core-core repulsion = 28735.854661 eV Total energy + Delta-G solvation = -4035.213005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52052 -40.57492 -38.11040 -35.57281 -34.92455 -33.27234 -32.88814 -31.65235 -30.58980 -29.64073 -28.61847 -27.51531 -26.94068 -25.15148 -24.00115 -22.01760 -21.84062 -21.20485 -20.79709 -20.42305 -19.33813 -17.74942 -17.19068 -16.95595 -16.51675 -16.31578 -15.83947 -15.78821 -15.21122 -14.62025 -14.42387 -14.31392 -14.02802 -13.78714 -13.33534 -13.26110 -13.03776 -12.90664 -12.61135 -12.27306 -12.10676 -11.93027 -11.72606 -11.43939 -11.36269 -11.24987 -11.08485 -10.92310 -10.90307 -10.75596 -10.50545 -10.37297 -10.08351 -9.82435 -9.57221 -9.55217 -9.22300 -9.13530 -9.08973 -8.44427 -8.34815 -7.85783 -6.76812 -5.60307 -2.95741 1.82451 2.08907 2.28629 3.25080 3.42707 3.49028 3.49472 3.50797 3.60201 4.28517 4.53429 4.77247 4.82496 4.95181 4.96848 5.05993 5.21695 5.26954 5.36339 5.44959 5.48207 5.53305 5.62903 5.72307 5.75540 5.83360 5.89299 5.95540 6.12526 6.15968 6.19892 6.23533 6.32802 6.37253 6.41417 6.54540 6.56304 6.66854 6.81670 6.87883 6.98560 7.07945 7.11074 7.15484 7.25470 7.69711 7.70357 7.75404 7.93722 7.95954 8.36249 8.53620 9.29921 9.92332 10.48788 11.45708 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.003324 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.410757 B = 8422.567905 C = 8669.146878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.401 5.401 3 N -0.308 5.308 4 C 0.111 3.889 5 C -0.358 4.358 6 C 0.626 3.374 7 O -0.569 6.569 8 N -0.606 5.606 9 C 0.114 3.886 10 C -0.109 4.109 11 H 0.083 0.917 12 C -0.080 4.080 13 H 0.082 0.918 14 C 0.098 3.902 15 C -0.107 4.107 16 H 0.061 0.939 17 C -0.097 4.097 18 C -0.126 4.126 19 C 0.182 3.818 20 H 0.066 0.934 21 N -0.603 5.603 22 C -0.228 4.228 23 H 0.074 0.926 24 C -0.010 4.010 25 N -0.924 5.924 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 C 0.204 3.796 31 C 0.428 3.572 32 N -0.833 5.833 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.188 0.812 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.249 0.751 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.428 0.572 49 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.467 3.664 -15.328 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.189 5.189 3 N -0.127 5.127 4 C -0.079 4.079 5 C -0.378 4.378 6 C 0.417 3.583 7 O -0.450 6.450 8 N -0.338 5.338 9 C -0.009 4.009 10 C -0.130 4.130 11 H 0.101 0.899 12 C -0.099 4.099 13 H 0.100 0.900 14 C -0.026 4.026 15 C -0.127 4.127 16 H 0.080 0.920 17 C -0.135 4.135 18 C -0.166 4.166 19 C 0.074 3.926 20 H 0.084 0.916 21 N -0.327 5.327 22 C -0.358 4.358 23 H 0.092 0.908 24 C -0.206 4.206 25 N -0.573 5.573 26 Si 0.738 3.262 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.220 1.220 30 C 0.080 3.920 31 C 0.194 3.806 32 N -0.382 5.382 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.205 0.795 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.263 0.737 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.452 4.148 -15.465 20.912 hybrid contribution 0.860 -1.404 0.851 1.853 sum -12.591 2.744 -14.614 19.485 Atomic orbital electron populations 1.21779 0.74405 1.04506 1.03178 1.48107 1.06286 1.02359 1.62187 1.77115 1.01725 1.05291 1.28548 1.23870 0.95103 0.93440 0.95452 1.19149 0.90747 0.93745 1.34147 1.16446 0.80615 0.84396 0.76801 1.90726 1.83918 1.24151 1.46219 1.48611 1.13177 1.17494 1.54488 1.22380 0.84185 0.97862 0.96508 1.22787 1.00058 0.96777 0.93368 0.89909 1.22024 0.96970 0.97213 0.93695 0.90005 1.22722 1.00472 0.85511 0.93856 1.21802 0.95996 0.97788 0.97072 0.92032 1.21348 0.97088 0.95650 0.99383 1.22185 0.98014 0.96959 0.99405 1.20743 0.92503 0.94137 0.85236 0.91622 1.45089 1.57870 1.22708 1.07023 1.19332 1.21989 1.02447 0.91995 0.90818 1.24755 1.00873 0.97549 0.97402 1.70026 1.48345 1.20892 1.17990 0.86121 0.79739 0.79023 0.81361 1.20673 1.21946 1.22015 1.21380 0.94395 0.86166 0.90019 1.17921 0.89372 0.81849 0.91480 1.41590 1.11016 1.02626 1.82960 0.90898 0.90182 0.88734 0.79496 0.90159 0.92028 0.91653 0.89980 0.93695 0.93106 0.93289 0.93114 0.94068 0.93266 0.93193 0.73726 0.77212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.24 59.85 0.67 1.32 16 2 N -0.40 -4.41 4.00 -66.82 -0.27 -4.68 16 3 N -0.31 -3.94 12.47 30.88 0.38 -3.56 16 4 C 0.11 1.38 10.00 -16.97 -0.17 1.21 16 5 C -0.36 -4.96 4.88 -104.82 -0.51 -5.47 16 6 C 0.63 9.75 5.86 -12.81 -0.08 9.67 16 7 O -0.57 -10.19 16.12 5.20 0.08 -10.11 16 8 N -0.61 -8.78 1.73 -170.79 -0.30 -9.08 16 9 C 0.11 1.68 5.77 -2.42 -0.01 1.67 16 10 C -0.11 -1.82 3.34 -89.02 -0.30 -2.12 16 11 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 12 C -0.08 -1.26 3.20 -89.08 -0.28 -1.54 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.10 1.26 4.63 -2.38 -0.01 1.25 16 15 C -0.11 -1.97 2.71 -90.26 -0.24 -2.21 16 16 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.10 -1.75 5.07 -26.74 -0.14 -1.89 16 18 C -0.13 -2.39 5.28 -26.09 -0.14 -2.52 16 19 C 0.18 3.65 3.12 -66.50 -0.21 3.44 16 20 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 21 N -0.60 -14.68 2.92 -161.01 -0.47 -15.15 16 22 C -0.23 -6.21 10.00 -15.06 -0.15 -6.36 16 23 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 24 C -0.01 -0.29 5.47 -17.43 -0.10 -0.38 16 25 N -0.92 -26.61 9.79 55.49 0.54 -26.06 16 26 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 C 0.20 4.80 4.42 -2.02 -0.01 4.80 16 31 C 0.43 5.18 7.97 -153.78 -1.23 3.96 16 32 N -0.83 -7.87 9.02 31.40 0.28 -7.59 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.32 7.47 -51.93 -0.39 -0.07 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.19 1.89 6.56 -52.49 -0.34 1.54 16 37 H 0.08 1.28 7.00 -51.93 -0.36 0.91 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.03 4.66 -51.93 -0.24 0.79 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.86 4.55 -51.93 -0.24 0.62 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.92 5.07 -51.93 -0.26 0.66 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.05 1.29 7.27 -51.93 -0.38 0.91 16 47 H 0.05 1.34 7.24 -51.93 -0.38 0.97 16 48 H 0.43 4.59 7.68 -40.82 -0.31 4.28 16 49 H 0.40 2.36 8.05 -40.82 -0.33 2.03 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -33.61 362.86 -9.19 -42.80 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.00 Total: 6.10 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -2.90 Total: 4.82 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: 0.18 Total: -66.13 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.61 -9.19 -42.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087352824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.726 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds