Wall clock time and date at job start Wed Apr 1 2020 04:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48501 * 109.47484 * 270.00242 * 3 2 1 5 5 H 1.48505 * 109.47043 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.47288 * 150.00120 * 3 2 1 7 7 C 1.38814 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99854 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00337 * 202.98456 * 9 7 2 11 11 H 1.08995 * 109.52160 * 1.93163 * 10 9 7 12 12 C 1.53797 * 109.52121 * 122.05824 * 10 9 7 13 13 C 1.52445 * 109.40103 * 197.74260 * 12 10 9 14 14 C 1.53958 * 110.72844 * 246.27050 * 13 12 10 15 15 C 1.52873 * 109.73025 * 44.36530 * 14 13 12 16 16 C 1.53443 * 109.38514 * 72.89505 * 15 14 13 17 17 N 1.45332 * 108.41626 * 282.28032 * 16 15 14 18 18 C 1.34776 * 120.36653 * 136.66171 * 17 16 15 19 19 O 1.21620 * 119.99880 * 1.17066 * 18 17 16 20 20 C 1.47261 * 119.99679 * 181.17389 * 18 17 16 21 21 C 1.46748 * 126.97049 * 353.23015 * 20 18 17 22 22 C 1.34506 * 106.36334 * 179.97438 * 21 20 18 23 23 N 1.36421 * 109.01115 * 359.97438 * 22 21 20 24 24 C 1.35210 * 109.90003 * 0.02562 * 23 22 21 25 25 C 1.50998 * 124.54460 * 179.71087 * 24 23 22 26 26 C 1.53260 * 108.32689 * 344.74220 * 25 24 23 27 27 C 1.53159 * 109.17958 * 48.14157 * 26 25 24 28 28 C 1.47021 * 126.00854 * 180.02562 * 23 22 21 29 29 C 1.46969 * 119.26684 * 316.92729 * 17 16 15 30 30 H 0.96998 * 119.99691 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99631 * 22.98384 * 9 7 2 32 32 H 1.08997 * 109.48489 * 77.75710 * 12 10 9 33 33 H 1.09002 * 109.48218 * 317.71643 * 12 10 9 34 34 H 1.08999 * 109.22796 * 125.95105 * 13 12 10 35 35 H 1.08995 * 109.19021 * 6.57052 * 13 12 10 36 36 H 1.08997 * 109.42421 * 284.28083 * 14 13 12 37 37 H 1.09003 * 109.42158 * 164.44945 * 14 13 12 38 38 H 1.08997 * 109.48475 * 312.92309 * 15 14 13 39 39 H 1.09003 * 109.49710 * 192.87801 * 15 14 13 40 40 H 1.09001 * 109.67616 * 162.54612 * 16 15 14 41 41 H 1.09001 * 109.70467 * 42.03085 * 16 15 14 42 42 H 1.07994 * 126.82335 * 359.93151 * 21 20 18 43 43 H 1.07990 * 125.49145 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.70990 * 104.29845 * 25 24 23 45 45 H 1.09004 * 109.70844 * 224.91776 * 25 24 23 46 46 H 1.09006 * 109.34481 * 288.30729 * 26 25 24 47 47 H 1.08994 * 109.66830 * 168.17619 * 26 25 24 48 48 H 1.08995 * 109.46197 * 170.56309 * 27 26 25 49 49 H 1.08998 * 109.44842 * 50.58887 * 27 26 25 50 50 H 1.09003 * 109.56332 * 282.21535 * 28 23 22 51 51 H 1.08995 * 109.56428 * 42.55229 * 28 23 22 52 52 H 1.09000 * 109.53423 * 231.25723 * 29 17 16 53 53 H 1.09004 * 109.53254 * 351.48630 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9711 -3.6066 0.4943 11 1 2.9738 -3.3691 0.8495 12 6 1.1425 -4.1944 1.6491 13 6 2.0018 -5.1725 2.4421 14 6 1.4675 -6.6091 2.2966 15 6 1.1209 -6.8851 0.8335 16 6 2.4152 -7.0391 0.0238 17 7 2.9612 -5.7155 -0.2254 18 6 4.2820 -5.4861 -0.0864 19 8 5.0271 -6.3943 0.2285 20 6 4.8228 -4.1357 -0.3158 21 6 4.0957 -2.9694 -0.8301 22 6 4.9824 -1.9590 -0.8735 23 7 6.1910 -2.4088 -0.4285 24 6 6.1004 -3.7154 -0.0926 25 6 7.2466 -4.5456 0.4339 26 6 8.5531 -3.7936 0.1574 27 6 8.4011 -2.3380 0.6090 28 6 7.4228 -1.6136 -0.3204 29 6 2.0563 -4.6285 -0.6249 30 1 -0.4849 0.8401 0.0004 31 1 0.4132 -2.4214 -0.3282 32 1 0.2754 -4.7169 1.2452 33 1 0.8095 -3.3893 2.3041 34 1 1.9889 -4.8898 3.4947 35 1 3.0261 -5.1312 2.0719 36 1 0.5740 -6.7274 2.9095 37 1 2.2296 -7.3145 2.6281 38 1 0.5393 -6.0540 0.4347 39 1 0.5375 -7.8033 0.7648 40 1 2.1985 -7.5313 -0.9244 41 1 3.1340 -7.6322 0.5892 42 1 3.0554 -2.9302 -1.1173 43 1 4.7715 -0.9537 -1.2069 44 1 7.1307 -4.6932 1.5076 45 1 7.2630 -5.5116 -0.0708 46 1 8.7677 -3.8234 -0.9109 47 1 9.3695 -4.2625 0.7065 48 1 9.3715 -1.8430 0.5716 49 1 8.0195 -2.3127 1.6296 50 1 7.8720 -1.5005 -1.3071 51 1 7.1885 -0.6317 0.0904 52 1 2.4415 -4.1450 -1.5226 53 1 1.0648 -5.0348 -0.8252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088328569.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:53 Heat of formation + Delta-G solvation = 41.136972 kcal Electronic energy + Delta-G solvation = -33566.269976 eV Core-core repulsion = 29632.351602 eV Total energy + Delta-G solvation = -3933.918374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.69926 -41.05168 -38.75191 -37.10306 -36.23117 -35.05512 -34.02508 -33.28039 -31.39810 -30.34857 -29.03718 -28.50034 -27.22707 -25.57808 -25.06976 -24.40997 -22.76520 -22.47009 -21.67564 -20.89724 -19.91799 -19.15447 -19.09488 -17.79515 -17.44100 -17.08737 -16.65440 -16.34547 -16.16523 -15.71468 -15.42485 -15.18216 -15.15861 -14.99883 -14.96353 -14.57211 -14.42019 -14.24218 -13.98513 -13.77602 -13.65855 -13.35519 -13.09883 -12.86190 -12.78631 -12.59581 -12.49835 -12.27082 -12.15667 -12.02689 -11.94322 -11.81944 -11.70070 -11.68570 -11.58396 -11.42067 -11.33734 -11.05066 -10.76880 -10.68851 -9.55554 -9.15124 -8.94200 -8.66596 -7.84257 -5.17322 0.87730 1.47268 1.49548 1.56001 1.67209 1.96202 2.31034 2.62987 2.69617 3.48823 3.61425 3.72465 3.77219 3.84329 3.91858 3.97370 4.05337 4.13812 4.20115 4.23008 4.29926 4.33871 4.37698 4.44604 4.52648 4.53887 4.66873 4.68410 4.73933 4.79827 4.86238 4.87071 4.92032 4.95420 5.01524 5.04577 5.05713 5.11283 5.15078 5.22492 5.28602 5.30064 5.36734 5.44701 5.50030 5.58160 5.64408 5.81094 5.90687 6.03163 6.28492 6.44735 6.48764 6.61049 7.42729 7.47426 8.17948 8.49227 9.38153 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007371 B = 0.006730 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.744722 B = 4159.289272 C = 7287.602273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.948 3.052 4 H -0.285 1.285 5 H -0.306 1.306 6 H -0.270 1.270 7 C -0.235 4.235 8 H 0.097 0.903 9 N -0.722 5.722 10 C 0.156 3.844 11 H 0.067 0.933 12 C -0.128 4.128 13 C -0.112 4.112 14 C -0.107 4.107 15 C -0.142 4.142 16 C 0.112 3.888 17 N -0.592 5.592 18 C 0.592 3.408 19 O -0.590 6.590 20 C -0.274 4.274 21 C -0.171 4.171 22 C -0.036 4.036 23 N -0.441 5.441 24 C 0.100 3.900 25 C -0.049 4.049 26 C -0.118 4.118 27 C -0.129 4.129 28 C 0.091 3.909 29 C 0.097 3.903 30 H 0.245 0.755 31 H 0.368 0.632 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.180 0.820 43 H 0.166 0.834 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.118 0.882 49 H 0.064 0.936 50 H 0.099 0.901 51 H 0.095 0.905 52 H 0.074 0.926 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.293 -10.259 0.036 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.778 3.222 4 H -0.212 1.212 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.367 4.367 8 H 0.115 0.885 9 N -0.361 5.361 10 C 0.047 3.953 11 H 0.085 0.915 12 C -0.167 4.167 13 C -0.150 4.150 14 C -0.145 4.145 15 C -0.179 4.179 16 C -0.011 4.011 17 N -0.323 5.323 18 C 0.384 3.616 19 O -0.473 6.473 20 C -0.284 4.284 21 C -0.194 4.194 22 C -0.161 4.161 23 N -0.118 5.118 24 C -0.018 4.018 25 C -0.087 4.087 26 C -0.156 4.156 27 C -0.167 4.167 28 C -0.029 4.029 29 C -0.028 4.028 30 H 0.054 0.946 31 H 0.200 0.800 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.196 0.804 43 H 0.183 0.817 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.136 0.864 49 H 0.083 0.917 50 H 0.117 0.883 51 H 0.113 0.887 52 H 0.092 0.908 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.073 -10.334 0.270 17.462 hybrid contribution -0.708 1.521 0.016 1.678 sum 13.365 -8.813 0.286 16.012 Atomic orbital electron populations 1.69873 1.06544 1.25348 1.59416 1.25672 0.95992 1.00590 1.03558 0.85526 0.78154 0.81072 0.77446 1.21177 1.23340 1.19460 1.20130 0.92574 0.84032 1.39914 0.88539 1.42423 1.15206 1.04040 1.74416 1.21051 0.96462 0.85920 0.91867 0.91474 1.22250 0.99170 0.97401 0.97881 1.21595 0.98977 0.95667 0.98750 1.21671 1.00899 0.95100 0.96819 1.22284 0.96801 1.03691 0.95110 1.21552 0.95869 0.83586 1.00062 1.47496 1.06163 1.11008 1.67663 1.17447 0.81739 0.86860 0.75523 1.90632 1.58546 1.46337 1.51806 1.20144 0.95026 0.94563 1.18670 1.23691 1.01022 0.91096 1.03550 1.21872 0.84636 1.00511 1.09089 1.44159 1.09973 1.08403 1.49289 1.20564 0.95680 0.84974 1.00626 1.20407 0.90276 0.97258 1.00780 1.21658 0.96480 0.94917 1.02540 1.21893 1.00191 0.95996 0.98581 1.22407 0.82595 0.95138 1.02733 1.22476 0.94204 0.87751 0.98329 0.94629 0.79994 0.90903 0.94924 0.93468 0.94006 0.91027 0.92041 0.90288 0.88519 0.90969 0.90454 0.80377 0.81704 0.90638 0.89838 0.91125 0.88426 0.86422 0.91706 0.88299 0.88711 0.90806 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.58 13.20 21.65 0.29 -56.29 16 2 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 3 Si 0.95 43.95 29.55 68.60 2.03 45.97 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.23 -11.93 8.65 84.03 0.73 -11.20 16 8 H 0.10 4.67 3.97 -2.91 -0.01 4.66 16 9 N -0.72 -33.48 4.32 -323.54 -1.40 -34.88 16 10 C 0.16 6.05 1.53 44.86 0.07 6.12 16 11 H 0.07 2.92 4.34 -2.39 -0.01 2.91 16 12 C -0.13 -4.58 5.11 30.68 0.16 -4.42 16 13 C -0.11 -3.56 5.41 30.73 0.17 -3.39 16 14 C -0.11 -2.67 5.75 30.88 0.18 -2.50 16 15 C -0.14 -3.22 5.45 30.70 0.17 -3.05 16 16 C 0.11 2.95 6.01 86.75 0.52 3.47 16 17 N -0.59 -19.04 1.69 -829.02 -1.41 -20.44 16 18 C 0.59 21.85 6.25 86.62 0.54 22.39 16 19 O -0.59 -23.33 14.74 -4.10 -0.06 -23.39 16 20 C -0.27 -10.11 5.31 -19.12 -0.10 -10.21 16 21 C -0.17 -6.49 5.53 23.64 0.13 -6.36 16 22 C -0.04 -1.25 9.84 83.12 0.82 -0.43 16 23 N -0.44 -13.08 3.11 -507.99 -1.58 -14.66 16 24 C 0.10 3.24 6.57 41.69 0.27 3.52 16 25 C -0.05 -1.29 5.39 30.03 0.16 -1.13 16 26 C -0.12 -2.04 5.97 30.73 0.18 -1.86 16 27 C -0.13 -2.01 5.93 30.70 0.18 -1.83 16 28 C 0.09 1.80 6.90 86.33 0.60 2.40 16 29 C 0.10 3.22 4.42 85.89 0.38 3.60 16 30 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.37 18.26 8.28 -92.70 -0.77 17.50 16 32 H 0.07 2.36 5.47 -2.39 -0.01 2.35 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.51 5.37 -2.39 -0.01 1.50 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.49 7.87 -2.39 -0.02 1.47 16 38 H 0.08 1.96 3.35 -2.39 -0.01 1.95 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 2.21 6.80 -2.39 -0.02 2.19 16 42 H 0.18 7.29 2.36 -2.91 -0.01 7.28 16 43 H 0.17 5.57 7.80 -2.92 -0.02 5.55 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 2.40 7.29 -2.38 -0.02 2.38 16 46 H 0.07 1.18 8.12 -2.38 -0.02 1.16 16 47 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 48 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.16 8.12 -2.39 -0.02 1.15 16 50 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 51 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.07 2.66 5.39 -2.39 -0.01 2.65 16 53 H 0.09 2.72 6.06 -2.38 -0.01 2.70 16 Total: -1.00 -66.52 373.76 3.67 -62.85 By element: Atomic # 1 Polarization: 48.62 SS G_CDS: 0.18 Total: 48.81 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 5.62 Total: -7.98 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -4.10 Total: -126.27 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.52 3.67 -62.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088328569.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.989 kcal (2) G-P(sol) polarization free energy of solvation -66.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds