Wall clock time and date at job start Wed Apr 1 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99692 * 2 1 4 4 H 1.48497 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47089 * 300.00385 * 3 2 1 6 6 H 1.48498 * 109.47050 * 59.99945 * 3 2 1 7 7 C 1.38812 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99739 * 170.94867 * 7 2 1 9 9 N 1.36932 * 119.99713 * 351.23115 * 7 2 1 10 10 C 1.48156 * 127.83796 * 163.89120 * 9 7 2 11 11 C 1.54726 * 104.40189 * 140.37735 * 10 9 7 12 12 H 1.09003 * 111.42221 * 264.28492 * 11 10 9 13 13 C 1.54158 * 104.97062 * 24.26696 * 11 10 9 14 14 H 1.08999 * 110.99990 * 239.64203 * 13 11 10 15 15 C 1.48147 * 127.83890 * 344.20535 * 9 7 2 16 16 C 1.53264 * 109.36929 * 116.27397 * 13 11 10 17 17 H 1.08991 * 110.51760 * 181.96333 * 16 13 11 18 18 C 1.53338 * 108.66632 * 60.52799 * 16 13 11 19 19 C 1.52916 * 109.62129 * 299.33933 * 18 16 13 20 20 C 1.52976 * 108.95435 * 141.81041 * 11 10 9 21 21 H 1.09004 * 109.64649 * 66.25818 * 20 11 10 22 22 C 1.53599 * 109.11607 * 305.51563 * 20 11 10 23 23 N 1.47578 * 106.72762 * 300.24218 * 22 20 11 24 24 C 1.34769 * 122.02442 * 180.02562 * 23 22 20 25 25 O 1.21287 * 120.00244 * 180.02562 * 24 23 22 26 26 C 1.50704 * 120.00335 * 0.03042 * 24 23 22 27 27 C 1.56241 * 116.68650 * 297.41029 * 26 24 23 28 28 C 1.56950 * 102.16585 * 200.70964 * 27 26 24 29 29 N 1.49522 * 105.46802 * 358.87595 * 28 27 26 30 30 C 1.49514 * 105.92312 * 289.06000 * 29 28 27 31 31 C 1.54658 * 105.28858 * 71.25852 * 30 29 28 32 32 C 1.50469 * 102.03517 * 35.46918 * 29 28 27 33 33 H 0.96992 * 120.00573 * 359.97438 * 1 2 3 34 34 H 1.08998 * 110.41493 * 259.19183 * 10 9 7 35 35 H 1.09009 * 110.41051 * 21.64466 * 10 9 7 36 36 H 1.09002 * 110.40251 * 338.25724 * 15 9 7 37 37 H 1.09000 * 110.40514 * 100.56793 * 15 9 7 38 38 H 1.08996 * 109.44535 * 179.29420 * 18 16 13 39 39 H 1.09004 * 109.41870 * 59.37106 * 18 16 13 40 40 H 1.09001 * 109.38267 * 240.49934 * 19 18 16 41 41 H 1.08998 * 109.29080 * 120.77555 * 19 18 16 42 42 H 1.08997 * 110.00323 * 59.55200 * 22 20 11 43 43 H 1.09007 * 110.00166 * 180.94006 * 22 20 11 44 44 H 1.09003 * 110.67119 * 319.47272 * 27 26 24 45 45 H 1.09005 * 110.67184 * 82.60753 * 27 26 24 46 46 H 1.08992 * 109.92589 * 240.00377 * 28 27 26 47 47 H 1.09000 * 110.46080 * 118.02716 * 28 27 26 48 48 H 1.08996 * 110.28245 * 312.30806 * 30 29 28 49 49 H 1.09004 * 110.36375 * 190.25399 * 30 29 28 50 50 H 1.08994 * 110.67187 * 242.23109 * 31 30 29 51 51 H 1.09007 * 110.81388 * 119.15515 * 31 30 29 52 52 H 1.09000 * 111.91213 * 188.40509 * 32 29 28 53 53 H 1.09000 * 111.91134 * 62.18884 * 32 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0802 -1.2077 -0.1477 9 7 1.3377 -2.3811 0.1797 10 6 1.8163 -3.7536 -0.1074 11 6 1.2825 -4.6018 1.0714 12 1 2.0343 -4.7156 1.8524 13 6 0.0589 -3.8260 1.5983 14 1 0.1932 -3.5480 2.6436 15 6 -0.0360 -2.5734 0.7002 16 6 -1.2032 -4.6728 1.4014 17 1 -2.0853 -4.1273 1.7363 18 6 -1.0465 -5.9781 2.1906 19 6 0.1657 -6.7510 1.6694 20 6 0.8411 -5.9672 0.5413 21 1 1.7096 -6.5186 0.1809 22 6 -0.1667 -5.7620 -0.5996 23 7 -1.3064 -5.0168 -0.0306 24 6 -2.3761 -4.6704 -0.7736 25 8 -3.2926 -4.0573 -0.2683 26 6 -2.4338 -5.0448 -2.2322 27 6 -1.3338 -4.4328 -3.1577 28 6 -1.9898 -4.5573 -4.5781 29 7 -3.3124 -5.2165 -4.3501 30 6 -3.0069 -6.6345 -3.9878 31 6 -2.3993 -6.5706 -2.5670 32 6 -3.7277 -4.6366 -3.0252 33 1 -0.4850 0.8399 0.0004 34 1 1.4049 -4.1098 -1.0518 35 1 2.9058 -3.7788 -0.1325 36 1 -0.3447 -1.7079 1.2865 37 1 -0.7329 -2.7438 -0.1204 38 1 -1.9435 -6.5853 2.0694 39 1 -0.9038 -5.7483 3.2465 40 1 -0.1585 -7.7209 1.2922 41 1 0.8759 -6.8983 2.4830 42 1 0.2919 -5.1857 -1.4030 43 1 -0.5038 -6.7273 -0.9774 44 1 -1.1457 -3.3917 -2.8954 45 1 -0.4151 -5.0168 -3.1016 46 1 -1.3655 -5.1760 -5.2227 47 1 -2.1304 -3.5712 -5.0206 48 1 -2.2863 -7.0567 -4.6882 49 1 -3.9202 -7.2296 -3.9816 50 1 -1.3741 -6.9407 -2.5700 51 1 -3.0083 -7.1335 -1.8595 52 1 -4.6183 -5.1243 -2.6290 53 1 -3.8497 -3.5546 -3.0751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089894661.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:28 Heat of formation + Delta-G solvation = 10.049150 kcal Electronic energy + Delta-G solvation = -34063.310388 eV Core-core repulsion = 30128.043945 eV Total energy + Delta-G solvation = -3935.266443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.67999 -41.54048 -39.25572 -37.23601 -34.53083 -33.85920 -33.31564 -31.53981 -31.33380 -30.84790 -29.12149 -28.11078 -27.00964 -26.33184 -23.95573 -23.54109 -22.77593 -22.25786 -21.82543 -21.54387 -20.29150 -18.82112 -17.96534 -17.63583 -17.42265 -17.22240 -16.98901 -16.70547 -16.22888 -15.99487 -15.61477 -15.21779 -15.01597 -14.62689 -14.41041 -14.31431 -14.20387 -13.89281 -13.71182 -13.60737 -13.38119 -13.22643 -13.00546 -12.84682 -12.81995 -12.71515 -12.59859 -12.46648 -12.40855 -12.25082 -12.17773 -11.89469 -11.83610 -11.76577 -11.65400 -11.27674 -11.17156 -11.02550 -10.96033 -10.70023 -10.60287 -10.06951 -9.43396 -8.86212 -7.91020 -5.27658 1.40578 1.41484 1.52372 1.55510 1.98150 2.45376 2.79254 3.27041 3.34826 3.44778 3.54692 3.62638 3.72134 3.80391 3.86120 3.90937 3.99096 4.09922 4.15651 4.17467 4.27912 4.31067 4.34911 4.40600 4.45715 4.49179 4.51061 4.57389 4.63664 4.69192 4.71750 4.74219 4.81241 4.84866 4.90563 4.92147 4.94730 5.01308 5.04971 5.12395 5.14700 5.20761 5.25193 5.34472 5.37211 5.44883 5.45974 5.51401 5.56220 5.66836 5.67658 5.74927 6.17460 6.52982 6.99868 7.19301 7.70502 8.49506 9.21334 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010544 B = 0.004893 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.024574 B = 5720.584485 C = 7187.836577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.232 4.232 8 H 0.082 0.918 9 N -0.620 5.620 10 C 0.122 3.878 11 C -0.080 4.080 12 H 0.086 0.914 13 C -0.112 4.112 14 H 0.072 0.928 15 C 0.182 3.818 16 C 0.151 3.849 17 H 0.061 0.939 18 C -0.117 4.117 19 C -0.101 4.101 20 C -0.084 4.084 21 H 0.120 0.880 22 C 0.103 3.897 23 N -0.587 5.587 24 C 0.546 3.454 25 O -0.593 6.593 26 C -0.128 4.128 27 C -0.127 4.127 28 C 0.019 3.981 29 N -0.471 5.471 30 C 0.016 3.984 31 C -0.123 4.123 32 C 0.038 3.962 33 H 0.243 0.757 34 H 0.033 0.967 35 H 0.050 0.950 36 H 0.024 0.976 37 H -0.007 1.007 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.031 0.969 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.102 0.898 51 H 0.077 0.923 52 H 0.091 0.909 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -22.604 -3.526 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.361 4.361 8 H 0.100 0.900 9 N -0.344 5.344 10 C -0.003 4.003 11 C -0.099 4.099 12 H 0.105 0.895 13 C -0.133 4.133 14 H 0.090 0.910 15 C 0.056 3.944 16 C 0.047 3.953 17 H 0.080 0.920 18 C -0.156 4.156 19 C -0.139 4.139 20 C -0.102 4.102 21 H 0.138 0.862 22 C -0.018 4.018 23 N -0.319 5.319 24 C 0.335 3.665 25 O -0.474 6.474 26 C -0.133 4.133 27 C -0.166 4.166 28 C -0.110 4.110 29 N -0.190 5.190 30 C -0.112 4.112 31 C -0.162 4.162 32 C -0.092 4.092 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.011 0.989 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.050 0.950 45 H 0.116 0.884 46 H 0.127 0.873 47 H 0.090 0.910 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.120 0.880 51 H 0.096 0.904 52 H 0.109 0.891 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.687 -21.993 -3.923 22.351 hybrid contribution 0.466 2.310 0.901 2.523 sum -0.221 -19.683 -3.022 19.915 Atomic orbital electron populations 1.70178 1.06741 1.25122 1.57748 1.25740 0.96246 1.01356 1.02691 0.85073 0.78579 0.79577 0.76514 1.18306 1.22223 1.22197 1.19415 0.91198 0.83737 1.41733 0.89990 1.45226 1.13733 1.01495 1.73897 1.22178 0.97361 0.84730 0.96012 1.22100 0.95922 0.94282 0.97639 0.89526 1.22567 0.95413 0.95980 0.99330 0.90965 1.21182 0.86049 0.93817 0.93349 1.21198 0.96787 0.96435 0.80905 0.92033 1.21868 0.99855 0.94262 0.99576 1.21483 0.96233 0.98223 0.97919 1.21477 0.98456 0.95076 0.95227 0.86185 1.22556 0.85917 0.96411 0.96909 1.48325 1.18559 1.54979 1.09995 1.19880 0.81352 0.77685 0.87603 1.90654 1.39666 1.42805 1.74283 1.23621 0.98937 1.00257 0.90483 1.23573 0.97916 0.99891 0.95261 1.24015 0.90585 1.01057 0.95297 1.69966 1.20515 1.04199 1.24347 1.23717 1.02143 0.90665 0.94723 1.23275 1.03761 0.90632 0.98510 1.24207 0.96325 0.99960 0.88666 0.94753 0.94944 0.93151 0.95739 0.98868 0.91407 0.90125 0.89434 0.89922 0.91432 0.87953 0.95046 0.88390 0.87323 0.90989 0.87786 0.88730 0.87993 0.90419 0.89094 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.84 10.86 21.65 0.24 -60.61 16 2 C -0.07 -3.95 5.40 84.86 0.46 -3.49 16 3 Si 0.97 47.20 29.56 68.60 2.03 49.23 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.23 -13.15 10.35 84.03 0.87 -12.28 16 8 H 0.08 4.41 7.84 -2.92 -0.02 4.39 16 9 N -0.62 -31.95 3.38 -687.39 -2.32 -34.27 16 10 C 0.12 4.65 6.54 86.65 0.57 5.21 16 11 C -0.08 -2.38 3.14 -9.82 -0.03 -2.41 16 12 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.11 -4.20 3.17 -9.83 -0.03 -4.23 16 14 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 15 C 0.18 9.37 5.25 86.55 0.45 9.83 16 16 C 0.15 4.97 2.92 44.98 0.13 5.10 16 17 H 0.06 2.48 7.23 -2.39 -0.02 2.46 16 18 C -0.12 -2.61 5.84 30.68 0.18 -2.43 16 19 C -0.10 -1.64 5.65 30.59 0.17 -1.46 16 20 C -0.08 -1.67 2.88 -10.58 -0.03 -1.70 16 21 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 22 C 0.10 2.32 4.26 86.37 0.37 2.69 16 23 N -0.59 -18.30 1.92 -790.14 -1.51 -19.81 16 24 C 0.55 19.80 6.47 87.66 0.57 20.37 16 25 O -0.59 -27.34 16.16 -3.05 -0.05 -27.39 16 26 C -0.13 -3.57 0.93 -49.21 -0.05 -3.61 16 27 C -0.13 -3.51 5.33 33.11 0.18 -3.34 16 28 C 0.02 0.44 6.67 87.18 0.58 1.02 16 29 N -0.47 -10.94 6.94 -851.64 -5.91 -16.85 16 30 C 0.02 0.25 6.61 86.36 0.57 0.82 16 31 C -0.12 -2.16 5.06 32.29 0.16 -1.99 16 32 C 0.04 1.10 6.08 87.06 0.53 1.63 16 33 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.03 1.21 5.28 -2.39 -0.01 1.20 16 35 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.02 1.49 6.52 -2.39 -0.02 1.47 16 37 H -0.01 -0.38 6.30 -2.39 -0.02 -0.39 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.74 3.57 -2.39 -0.01 1.73 16 43 H 0.10 1.58 5.88 -2.38 -0.01 1.57 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 2.23 6.06 -2.38 -0.01 2.21 16 46 H 0.11 1.82 7.69 -2.39 -0.02 1.80 16 47 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.10 1.19 7.69 -2.39 -0.02 1.17 16 49 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 50 H 0.10 1.31 6.01 -2.39 -0.01 1.30 16 51 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 52 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 53 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -79.78 375.08 -0.97 -80.75 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.91 Total: 19.23 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.65 Total: 9.73 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -9.51 Total: -131.54 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -79.78 -0.97 -80.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089894661.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.797 kcal (2) G-P(sol) polarization free energy of solvation -79.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds