Wall clock time and date at job start Wed Apr 1 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.29106 * 126.01236 * 2 1 4 4 N 1.29016 * 110.26378 * 180.02562 * 3 2 1 5 5 C 1.32912 * 108.63422 * 0.02562 * 4 3 2 6 6 C 1.34399 * 126.00636 * 179.97438 * 2 1 3 7 7 C 1.50537 * 129.25534 * 359.84651 * 6 2 1 8 8 C 1.53434 * 108.32825 * 196.44458 * 7 6 2 9 9 H 1.09006 * 109.45489 * 70.30772 * 8 7 6 10 10 C 1.50694 * 109.45811 * 190.27447 * 8 7 6 11 11 O 1.21276 * 120.00353 * 0.03339 * 10 8 7 12 12 N 1.34780 * 119.99846 * 180.02562 * 10 8 7 13 13 C 1.46499 * 120.00177 * 180.02562 * 12 10 8 14 14 H 1.09002 * 110.55891 * 36.96135 * 13 12 10 15 15 C 1.54851 * 110.62996 * 159.86803 * 13 12 10 16 16 C 1.56220 * 103.27069 * 118.44920 * 15 13 12 17 17 H 1.09004 * 116.06785 * 159.21215 * 16 15 13 18 18 C 1.55846 * 105.15001 * 288.27525 * 16 15 13 19 19 C 1.54849 * 103.44693 * 71.83071 * 18 16 15 20 20 C 1.55843 * 103.44642 * 359.97438 * 19 18 16 21 21 H 1.09002 * 115.55956 * 159.56418 * 20 19 18 22 22 N 1.50237 * 101.03448 * 33.05362 * 16 15 13 23 23 C 1.36939 * 130.83961 * 125.96237 * 22 16 15 24 24 H 1.08003 * 120.00527 * 179.97438 * 23 22 16 25 25 C 1.38815 * 120.00108 * 359.97438 * 23 22 16 26 26 N 1.31625 * 119.99506 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00274 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47355 * 59.99774 * 27 25 23 29 29 H 1.48500 * 109.47126 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46971 * 299.99442 * 27 25 23 31 31 C 1.53107 * 109.53964 * 310.29811 * 8 7 6 32 32 C 1.50594 * 129.16008 * 179.78011 * 5 4 3 33 33 H 1.08995 * 109.47578 * 269.99898 * 1 2 3 34 34 H 1.08999 * 109.47394 * 30.00263 * 1 2 3 35 35 H 1.09001 * 109.47391 * 150.00140 * 1 2 3 36 36 H 1.08999 * 109.69400 * 76.73257 * 7 6 2 37 37 H 1.08996 * 109.72345 * 316.17391 * 7 6 2 38 38 H 0.97004 * 119.99596 * 0.02562 * 12 10 8 39 39 H 1.08995 * 110.62771 * 236.97969 * 15 13 12 40 40 H 1.09001 * 110.62372 * 0.02562 * 15 13 12 41 41 H 1.09001 * 110.62464 * 313.34138 * 18 16 15 42 42 H 1.09002 * 110.75925 * 190.38426 * 18 16 15 43 43 H 1.08999 * 110.62413 * 241.51294 * 19 18 16 44 44 H 1.08999 * 110.76181 * 118.55416 * 19 18 16 45 45 H 0.97003 * 119.99768 * 180.02562 * 26 25 23 46 46 H 1.08996 * 109.45311 * 190.08866 * 31 8 7 47 47 H 1.09002 * 109.44901 * 310.01836 * 31 8 7 48 48 H 1.09003 * 109.69583 * 316.33819 * 32 5 4 49 49 H 1.08999 * 109.69300 * 76.87733 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4657 0.6942 -0.0005 5 6 3.5327 -0.6333 -0.0015 6 6 2.2550 -1.0872 0.0005 7 6 1.8720 -2.5431 0.0043 8 6 3.1012 -3.3642 0.4156 9 1 3.3138 -3.1955 1.4713 10 6 2.8264 -4.8281 0.1865 11 8 1.7562 -5.1815 -0.2612 12 7 3.7703 -5.7447 0.4791 13 6 3.5035 -7.1678 0.2559 14 1 2.9115 -7.3091 -0.6484 15 6 4.8286 -7.9645 0.1705 16 6 4.7258 -8.9611 1.3691 17 1 5.3598 -9.8459 1.3120 18 6 4.9079 -8.0843 2.6446 19 6 3.5829 -7.2870 2.7257 20 6 2.7809 -7.7901 1.4878 21 1 1.7032 -7.6325 1.5299 22 7 3.2458 -9.2167 1.4043 23 6 2.5384 -10.3888 1.3708 24 1 1.4592 -10.3695 1.4068 25 6 3.2085 -11.6019 1.2905 26 7 4.5238 -11.6254 1.2461 27 14 2.2437 -13.2007 1.2455 28 1 1.3492 -13.2059 0.0602 29 1 3.1860 -14.3453 1.1602 30 1 1.4290 -13.3222 2.4811 31 6 4.3081 -2.9344 -0.4227 32 6 4.7467 -1.5243 -0.0069 33 1 -0.3634 0.0000 1.0276 34 1 -0.3634 0.8899 -0.5139 35 1 -0.3634 -0.8900 -0.5138 36 1 1.5487 -2.8404 -0.9933 37 1 1.0642 -2.7091 0.7168 38 1 4.6262 -5.4620 0.8375 39 1 4.8926 -8.5030 -0.7750 40 1 5.6843 -7.3007 0.2946 41 1 5.7558 -7.4092 2.5285 42 1 5.0345 -8.7096 3.5284 43 1 3.7737 -6.2166 2.6499 44 1 3.0498 -7.5165 3.6483 45 1 4.9921 -12.4730 1.1896 46 1 5.1297 -3.6321 -0.2606 47 1 4.0354 -2.9342 -1.4781 48 1 5.4793 -1.1427 -0.7182 49 1 5.1848 -1.5542 0.9908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095927371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:11 Heat of formation + Delta-G solvation = 104.175551 kcal Electronic energy + Delta-G solvation = -30975.931970 eV Core-core repulsion = 26941.206811 eV Total energy + Delta-G solvation = -4034.725159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.64782 -40.30313 -38.77721 -36.70135 -35.15732 -34.03126 -32.38304 -30.86232 -30.73258 -29.30131 -29.02683 -28.15538 -27.57140 -24.94063 -24.08162 -23.48331 -21.70056 -21.42557 -20.78999 -19.77728 -19.46884 -18.59180 -17.67982 -17.21032 -16.99244 -16.56291 -15.58868 -15.42172 -14.88984 -14.84690 -14.50205 -14.18432 -14.11408 -13.99769 -13.79153 -13.59572 -13.48418 -13.17558 -12.52232 -12.38508 -12.24677 -12.21487 -11.84358 -11.75385 -11.51183 -11.44044 -11.28341 -11.08167 -10.94307 -10.93285 -10.85147 -10.78415 -10.24939 -10.21834 -10.14062 -9.88454 -9.65358 -9.41806 -9.27351 -9.08033 -8.95961 -8.55641 -6.94754 -5.75671 -3.13765 1.30572 2.04677 2.30412 2.74527 3.27772 3.38620 3.42715 3.43706 3.88922 4.16683 4.31916 4.42542 4.49281 4.51072 4.57480 4.61942 4.86571 4.90241 5.03956 5.14659 5.16479 5.17451 5.30231 5.35105 5.52780 5.55477 5.60076 5.70044 5.75015 5.77081 5.81207 5.87407 5.93245 6.00196 6.03111 6.07860 6.26110 6.29500 6.29668 6.50000 6.55958 6.63664 6.77051 6.92470 6.95973 7.23305 7.48927 7.69280 7.79221 8.13965 8.26926 8.40798 9.07514 9.70141 10.50223 11.33847 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002343 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.476310 B =11945.163052 C =12543.889691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.100 5.100 4 N -0.262 5.262 5 C -0.022 4.022 6 C -0.013 4.013 7 C -0.025 4.025 8 C -0.102 4.102 9 H 0.104 0.896 10 C 0.516 3.484 11 O -0.542 6.542 12 N -0.708 5.708 13 C 0.127 3.873 14 H 0.082 0.918 15 C -0.141 4.141 16 C 0.154 3.846 17 H 0.154 0.846 18 C -0.137 4.137 19 C -0.131 4.131 20 C 0.129 3.871 21 H 0.084 0.916 22 N -0.589 5.589 23 C -0.211 4.211 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.924 5.924 27 Si 0.917 3.083 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.286 1.286 31 C -0.111 4.111 32 C -0.030 4.030 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.396 0.604 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.255 0.745 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 20.130 -1.567 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.076 5.076 3 N -0.078 5.078 4 N -0.127 5.127 5 C -0.162 4.162 6 C -0.148 4.148 7 C -0.064 4.064 8 C -0.125 4.125 9 H 0.122 0.878 10 C 0.301 3.699 11 O -0.420 6.420 12 N -0.359 5.359 13 C 0.022 3.978 14 H 0.100 0.900 15 C -0.180 4.180 16 C 0.048 3.952 17 H 0.171 0.829 18 C -0.176 4.176 19 C -0.170 4.170 20 C 0.019 3.981 21 H 0.102 0.898 22 N -0.310 5.310 23 C -0.339 4.339 24 H 0.096 0.904 25 C -0.207 4.207 26 N -0.572 5.572 27 Si 0.748 3.252 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.213 1.213 31 C -0.150 4.150 32 C -0.070 4.070 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.065 21.088 -1.911 21.275 hybrid contribution -0.451 -1.597 0.252 1.678 sum -2.516 19.491 -1.659 19.723 Atomic orbital electron populations 1.22303 0.72662 1.06088 1.05201 1.46824 1.09227 1.04596 1.46949 1.78574 0.96126 1.11321 1.21811 1.74788 1.09629 1.11984 1.16278 1.21695 0.95023 0.91347 1.08154 1.21875 0.91230 0.92330 1.09320 1.19918 0.97784 0.84403 1.04338 1.21334 0.96192 0.92296 1.02632 0.87835 1.20247 0.84467 0.87261 0.77947 1.90705 1.24445 1.81799 1.45020 1.46244 1.17356 1.07405 1.64867 1.22645 0.98097 0.77064 1.00019 0.90034 1.23344 0.94021 0.98387 1.02290 1.23829 0.87337 0.95412 0.88653 0.82886 1.23050 0.95135 0.98182 1.01281 1.22915 0.97643 0.97561 0.98909 1.23168 0.96214 0.86081 0.92594 0.89755 1.46464 1.01704 0.98891 1.83915 1.19012 0.90183 0.82213 1.42506 0.90387 1.24696 0.95710 0.97479 1.02814 1.69424 1.05649 1.24648 1.57470 0.86106 0.78519 0.82719 0.77895 1.21207 1.21568 1.21268 1.21661 0.96770 0.96133 1.00407 1.19952 0.92529 0.91215 1.03256 0.88895 0.87938 0.88056 0.88459 0.89433 0.76974 0.91583 0.92676 0.93634 0.92693 0.93128 0.93150 0.93489 0.89747 0.90577 0.89311 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 11.27 59.84 0.67 1.07 16 2 N -0.28 -2.80 3.73 -64.01 -0.24 -3.04 16 3 N -0.10 -1.28 13.19 60.35 0.80 -0.48 16 4 N -0.26 -3.53 12.40 33.16 0.41 -3.12 16 5 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 6 C -0.01 -0.13 6.76 -82.49 -0.56 -0.69 16 7 C -0.02 -0.22 4.68 -27.74 -0.13 -0.35 16 8 C -0.10 -0.92 2.50 -91.49 -0.23 -1.14 16 9 H 0.10 0.81 8.12 -51.93 -0.42 0.39 16 10 C 0.52 6.55 7.15 -10.99 -0.08 6.48 16 11 O -0.54 -9.07 15.55 5.56 0.09 -8.99 16 12 N -0.71 -9.01 3.45 -51.43 -0.18 -9.19 16 13 C 0.13 2.20 3.06 -65.47 -0.20 2.00 16 14 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 15 C -0.14 -2.49 6.23 -24.03 -0.15 -2.64 16 16 C 0.15 3.32 4.72 -62.59 -0.30 3.03 16 17 H 0.15 3.82 5.52 -51.93 -0.29 3.53 16 18 C -0.14 -2.51 6.44 -24.24 -0.16 -2.66 16 19 C -0.13 -2.27 6.33 -24.24 -0.15 -2.42 16 20 C 0.13 2.56 5.34 -62.81 -0.34 2.22 16 21 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 22 N -0.59 -14.18 2.99 -145.60 -0.43 -14.62 16 23 C -0.21 -5.69 10.59 -15.06 -0.16 -5.85 16 24 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 26 N -0.92 -25.65 10.47 55.49 0.58 -25.07 16 27 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 30 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 31 C -0.11 -0.83 5.17 -26.46 -0.14 -0.97 16 32 C -0.03 -0.24 6.30 -27.72 -0.17 -0.41 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.35 7.96 -51.93 -0.41 -0.06 16 36 H 0.10 0.94 7.78 -51.93 -0.40 0.54 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.40 3.98 7.35 -40.82 -0.30 3.68 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 41 H 0.04 0.69 7.83 -51.93 -0.41 0.29 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.73 6.48 -51.93 -0.34 0.39 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.08 0.52 7.30 -51.93 -0.38 0.14 16 47 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -33.46 382.73 -8.50 -41.97 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.50 Total: 3.76 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.77 Total: -3.61 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.94 Total: -55.52 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.46 -8.50 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095927371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.141 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds