Wall clock time and date at job start Wed Apr 1 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.29106 * 126.01236 * 2 1 4 4 N 1.29016 * 110.26378 * 180.02562 * 3 2 1 5 5 C 1.32912 * 108.63422 * 0.02562 * 4 3 2 6 6 C 1.34399 * 126.00636 * 179.97438 * 2 1 3 7 7 C 1.50537 * 129.25534 * 359.84651 * 6 2 1 8 8 C 1.53434 * 108.32825 * 196.44458 * 7 6 2 9 9 H 1.09006 * 109.45489 * 70.30772 * 8 7 6 10 10 C 1.50694 * 109.45811 * 190.27447 * 8 7 6 11 11 O 1.21276 * 120.00353 * 0.03339 * 10 8 7 12 12 N 1.34780 * 119.99846 * 180.02562 * 10 8 7 13 13 C 1.46499 * 120.00177 * 180.02562 * 12 10 8 14 14 H 1.09002 * 110.55891 * 36.96135 * 13 12 10 15 15 C 1.54851 * 110.62996 * 159.86803 * 13 12 10 16 16 C 1.56220 * 103.27069 * 118.44920 * 15 13 12 17 17 H 1.09004 * 116.06785 * 159.21215 * 16 15 13 18 18 C 1.55846 * 105.15001 * 288.27525 * 16 15 13 19 19 C 1.54849 * 103.44693 * 71.83071 * 18 16 15 20 20 C 1.55843 * 103.44642 * 359.97438 * 19 18 16 21 21 H 1.09002 * 115.55956 * 159.56418 * 20 19 18 22 22 N 1.50237 * 101.03448 * 33.05362 * 16 15 13 23 23 C 1.36939 * 130.83961 * 125.96237 * 22 16 15 24 24 H 1.08003 * 120.00527 * 179.97438 * 23 22 16 25 25 C 1.38815 * 120.00108 * 359.97438 * 23 22 16 26 26 N 1.31625 * 119.99506 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00274 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47355 * 59.99774 * 27 25 23 29 29 H 1.48500 * 109.47126 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46971 * 299.99442 * 27 25 23 31 31 C 1.53107 * 109.53964 * 310.29811 * 8 7 6 32 32 C 1.50594 * 129.16008 * 179.78011 * 5 4 3 33 33 H 1.08995 * 109.47578 * 269.99898 * 1 2 3 34 34 H 1.08999 * 109.47394 * 30.00263 * 1 2 3 35 35 H 1.09001 * 109.47391 * 150.00140 * 1 2 3 36 36 H 1.08999 * 109.69400 * 76.73257 * 7 6 2 37 37 H 1.08996 * 109.72345 * 316.17391 * 7 6 2 38 38 H 0.97004 * 119.99596 * 0.02562 * 12 10 8 39 39 H 1.08995 * 110.62771 * 236.97969 * 15 13 12 40 40 H 1.09001 * 110.62372 * 0.02562 * 15 13 12 41 41 H 1.09001 * 110.62464 * 313.34138 * 18 16 15 42 42 H 1.09002 * 110.75925 * 190.38426 * 18 16 15 43 43 H 1.08999 * 110.62413 * 241.51294 * 19 18 16 44 44 H 1.08999 * 110.76181 * 118.55416 * 19 18 16 45 45 H 0.97003 * 119.99768 * 180.02562 * 26 25 23 46 46 H 1.08996 * 109.45311 * 190.08866 * 31 8 7 47 47 H 1.09002 * 109.44901 * 310.01836 * 31 8 7 48 48 H 1.09003 * 109.69583 * 316.33819 * 32 5 4 49 49 H 1.08999 * 109.69300 * 76.87733 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4657 0.6942 -0.0005 5 6 3.5327 -0.6333 -0.0015 6 6 2.2550 -1.0872 0.0005 7 6 1.8720 -2.5431 0.0043 8 6 3.1012 -3.3642 0.4156 9 1 3.3138 -3.1955 1.4713 10 6 2.8264 -4.8281 0.1865 11 8 1.7562 -5.1815 -0.2612 12 7 3.7703 -5.7447 0.4791 13 6 3.5035 -7.1678 0.2559 14 1 2.9115 -7.3091 -0.6484 15 6 4.8286 -7.9645 0.1705 16 6 4.7258 -8.9611 1.3691 17 1 5.3598 -9.8459 1.3120 18 6 4.9079 -8.0843 2.6446 19 6 3.5829 -7.2870 2.7257 20 6 2.7809 -7.7901 1.4878 21 1 1.7032 -7.6325 1.5299 22 7 3.2458 -9.2167 1.4043 23 6 2.5384 -10.3888 1.3708 24 1 1.4592 -10.3695 1.4068 25 6 3.2085 -11.6019 1.2905 26 7 4.5238 -11.6254 1.2461 27 14 2.2437 -13.2007 1.2455 28 1 1.3492 -13.2059 0.0602 29 1 3.1860 -14.3453 1.1602 30 1 1.4290 -13.3222 2.4811 31 6 4.3081 -2.9344 -0.4227 32 6 4.7467 -1.5243 -0.0069 33 1 -0.3634 0.0000 1.0276 34 1 -0.3634 0.8899 -0.5139 35 1 -0.3634 -0.8900 -0.5138 36 1 1.5487 -2.8404 -0.9933 37 1 1.0642 -2.7091 0.7168 38 1 4.6262 -5.4620 0.8375 39 1 4.8926 -8.5030 -0.7750 40 1 5.6843 -7.3007 0.2946 41 1 5.7558 -7.4092 2.5285 42 1 5.0345 -8.7096 3.5284 43 1 3.7737 -6.2166 2.6499 44 1 3.0498 -7.5165 3.6483 45 1 4.9921 -12.4730 1.1896 46 1 5.1297 -3.6321 -0.2606 47 1 4.0354 -2.9342 -1.4781 48 1 5.4793 -1.1427 -0.7182 49 1 5.1848 -1.5542 0.9908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095927371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:10 Heat of formation + Delta-G solvation = 82.576190 kcal Electronic energy + Delta-G solvation = -30976.868589 eV Core-core repulsion = 26941.206811 eV Total energy + Delta-G solvation = -4035.661778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.41401 -41.53337 -40.07016 -37.53613 -35.86632 -35.42078 -34.17392 -31.63862 -31.48165 -30.95843 -30.54812 -29.09218 -28.68457 -26.30309 -25.38857 -24.25294 -22.80047 -22.37931 -21.92323 -21.19963 -20.45344 -20.07206 -18.93581 -18.36854 -17.88778 -17.44501 -16.83040 -16.74413 -16.53248 -15.90060 -15.67852 -15.44791 -15.02205 -14.81949 -14.69277 -14.50783 -14.10365 -14.01266 -13.84431 -13.65864 -13.41983 -13.17630 -13.08291 -12.99422 -12.84524 -12.77349 -12.61033 -12.50186 -12.30632 -12.12824 -12.00058 -11.90047 -11.85446 -11.54575 -11.47643 -11.12596 -11.00626 -10.92903 -10.73321 -10.64733 -9.91461 -9.83528 -8.82105 -7.77491 -5.16214 0.54946 1.44917 1.47307 1.49014 1.49906 1.55095 1.74001 2.23370 2.52291 3.19144 3.35906 3.44852 3.58355 3.75526 3.81231 3.82596 3.95177 4.01520 4.13693 4.20401 4.21654 4.25720 4.35368 4.47504 4.49059 4.52924 4.55724 4.58029 4.67073 4.71157 4.77470 4.87134 4.93297 4.94971 5.03579 5.07646 5.12632 5.13737 5.21077 5.26112 5.31169 5.36769 5.38440 5.51721 5.60049 5.62793 5.82173 5.93852 6.31854 6.72770 7.08343 7.40951 7.46540 7.72225 8.58218 9.28927 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002343 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.476310 B =11945.163052 C =12543.889691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.279 5.279 3 N -0.130 5.130 4 N -0.299 5.299 5 C -0.031 4.031 6 C -0.014 4.014 7 C -0.020 4.020 8 C -0.091 4.091 9 H 0.128 0.872 10 C 0.519 3.481 11 O -0.584 6.584 12 N -0.695 5.695 13 C 0.149 3.851 14 H 0.052 0.948 15 C -0.125 4.125 16 C 0.137 3.863 17 H 0.118 0.882 18 C -0.126 4.126 19 C -0.116 4.116 20 C 0.118 3.882 21 H 0.066 0.934 22 N -0.619 5.619 23 C -0.224 4.224 24 H 0.070 0.930 25 C -0.063 4.063 26 N -0.943 5.943 27 Si 0.973 3.027 28 H -0.283 1.283 29 H -0.292 1.292 30 H -0.283 1.283 31 C -0.105 4.105 32 C -0.027 4.027 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.416 0.584 39 H 0.044 0.956 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.031 0.969 43 H 0.092 0.908 44 H 0.038 0.962 45 H 0.248 0.752 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 21.940 -0.991 21.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.071 5.071 3 N -0.108 5.108 4 N -0.162 5.162 5 C -0.173 4.173 6 C -0.149 4.149 7 C -0.059 4.059 8 C -0.112 4.112 9 H 0.146 0.854 10 C 0.307 3.693 11 O -0.464 6.464 12 N -0.347 5.347 13 C 0.042 3.958 14 H 0.070 0.930 15 C -0.165 4.165 16 C 0.031 3.969 17 H 0.135 0.865 18 C -0.165 4.165 19 C -0.155 4.155 20 C 0.010 3.990 21 H 0.084 0.916 22 N -0.341 5.341 23 C -0.353 4.353 24 H 0.088 0.912 25 C -0.256 4.256 26 N -0.593 5.593 27 Si 0.803 3.197 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.209 1.209 31 C -0.143 4.143 32 C -0.066 4.066 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.050 0.950 43 H 0.110 0.890 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.126 0.874 47 H 0.086 0.914 48 H 0.113 0.887 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.265 22.977 -1.322 23.050 hybrid contribution -0.800 -2.121 0.048 2.267 sum -2.065 20.856 -1.274 20.996 Atomic orbital electron populations 1.22715 0.70305 1.07516 1.06802 1.47193 1.10618 1.04008 1.45294 1.78498 0.96462 1.12461 1.23368 1.74740 1.10254 1.13487 1.17749 1.22291 0.96545 0.90941 1.07501 1.22023 0.91153 0.92641 1.09128 1.19879 0.98180 0.83743 1.04121 1.21298 0.96713 0.88880 1.04347 0.85447 1.20867 0.83440 0.88582 0.76452 1.90707 1.26340 1.82679 1.46650 1.45960 1.18470 1.05293 1.65023 1.22010 0.96937 0.79542 0.97347 0.92965 1.23167 0.95835 0.97987 0.99504 1.23751 0.85501 0.95714 0.91954 0.86522 1.22948 0.97165 0.98055 0.98361 1.22822 0.96298 0.99641 0.96775 1.23325 0.95959 0.84536 0.95197 0.91614 1.46733 1.03195 0.99669 1.84531 1.19253 0.90331 0.83992 1.41743 0.91205 1.25381 0.96653 0.99994 1.03580 1.69665 1.06493 1.24550 1.58589 0.85222 0.77283 0.79456 0.77785 1.20999 1.21747 1.20928 1.21655 0.96673 0.96422 0.99569 1.20064 0.91489 0.90478 1.04525 0.87161 0.86805 0.86456 0.89295 0.88794 0.74600 0.93697 0.88171 0.89183 0.95033 0.88996 0.94338 0.94191 0.87406 0.91404 0.88679 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 11.27 127.77 1.44 1.98 16 2 N -0.28 -5.07 3.73 -356.43 -1.33 -6.40 16 3 N -0.13 -3.22 13.19 37.02 0.49 -2.73 16 4 N -0.30 -7.75 12.40 -48.99 -0.61 -8.36 16 5 C -0.03 -0.63 7.11 41.75 0.30 -0.33 16 6 C -0.01 -0.25 6.76 41.50 0.28 0.03 16 7 C -0.02 -0.31 4.68 29.94 0.14 -0.16 16 8 C -0.09 -1.27 2.50 -11.36 -0.03 -1.30 16 9 H 0.13 1.30 8.12 -2.38 -0.02 1.28 16 10 C 0.52 11.61 7.15 87.65 0.63 12.23 16 11 O -0.58 -18.72 15.55 -3.02 -0.05 -18.76 16 12 N -0.70 -15.03 3.45 -435.02 -1.50 -16.54 16 13 C 0.15 4.89 3.06 46.59 0.14 5.03 16 14 H 0.05 2.05 7.70 -2.39 -0.02 2.03 16 15 C -0.13 -4.20 6.23 32.35 0.20 -4.00 16 16 C 0.14 5.82 4.72 46.36 0.22 6.04 16 17 H 0.12 5.94 5.52 -2.39 -0.01 5.93 16 18 C -0.13 -4.30 6.44 32.21 0.21 -4.09 16 19 C -0.12 -3.72 6.33 32.21 0.20 -3.52 16 20 C 0.12 4.61 5.34 46.20 0.25 4.86 16 21 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 22 N -0.62 -30.28 2.99 -614.55 -1.84 -32.12 16 23 C -0.22 -12.44 10.59 84.03 0.89 -11.55 16 24 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 25 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 26 N -0.94 -53.93 10.47 21.65 0.23 -53.70 16 27 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 29 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 30 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 31 C -0.10 -1.15 5.17 30.77 0.16 -0.99 16 32 C -0.03 -0.33 6.30 29.96 0.19 -0.14 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.12 0.58 7.96 -2.39 -0.02 0.56 16 36 H 0.09 1.57 7.78 -2.39 -0.02 1.55 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.42 5.88 7.35 -92.71 -0.68 5.20 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 2.42 7.35 -2.39 -0.02 2.41 16 41 H 0.09 2.27 7.83 -2.39 -0.02 2.25 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 2.17 6.48 -2.39 -0.02 2.16 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.11 0.72 7.30 -2.39 -0.02 0.70 16 47 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 48 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.55 382.73 3.40 -74.15 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.29 Total: 15.84 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 5.68 Total: 1.05 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -4.56 Total: -119.85 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.76 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -77.55 3.40 -74.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095927371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.723 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds