Wall clock time and date at job start Wed Apr 1 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.29114 * 126.00305 * 2 1 4 4 N 1.29018 * 110.25970 * 179.90795 * 3 2 1 5 5 C 1.32913 * 108.63273 * 359.97438 * 4 3 2 6 6 C 1.34391 * 126.01248 * 179.97438 * 2 1 3 7 7 C 1.50536 * 129.25701 * 0.16831 * 6 2 1 8 8 C 1.53436 * 108.32623 * 163.57579 * 7 6 2 9 9 H 1.08997 * 109.45586 * 289.71077 * 8 7 6 10 10 C 1.50705 * 109.45552 * 169.74334 * 8 7 6 11 11 O 1.21279 * 120.00050 * 359.96685 * 10 8 7 12 12 N 1.34772 * 119.99934 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00125 * 180.02562 * 12 10 8 14 14 H 1.08998 * 110.68312 * 32.01149 * 13 12 10 15 15 C 1.54857 * 110.62469 * 269.02783 * 13 12 10 16 16 C 1.55845 * 103.44521 * 241.50797 * 15 13 12 17 17 H 1.09003 * 115.56275 * 158.81059 * 16 15 13 18 18 C 1.56218 * 105.14924 * 288.16990 * 16 15 13 19 19 C 1.54851 * 103.27079 * 71.72664 * 18 16 15 20 20 C 1.55846 * 110.62702 * 155.00263 * 13 12 10 21 21 H 1.08996 * 116.12431 * 319.33650 * 20 13 12 22 22 N 1.50234 * 101.04981 * 85.55145 * 20 13 12 23 23 C 1.36939 * 130.83834 * 233.94020 * 22 20 13 24 24 H 1.08000 * 120.00098 * 171.60121 * 23 22 20 25 25 C 1.38813 * 120.00004 * 351.61422 * 23 22 20 26 26 N 1.31622 * 120.00196 * 157.79236 * 25 23 22 27 27 Si 1.86802 * 119.99813 * 337.78888 * 25 23 22 28 28 H 1.48504 * 109.46785 * 93.22213 * 27 25 23 29 29 H 1.48501 * 109.47042 * 213.21736 * 27 25 23 30 30 H 1.48490 * 109.47285 * 333.22248 * 27 25 23 31 31 C 1.53112 * 109.53647 * 49.73175 * 8 7 6 32 32 C 1.50599 * 129.15794 * 180.21178 * 5 4 3 33 33 H 1.08998 * 109.47020 * 270.01786 * 1 2 3 34 34 H 1.08999 * 109.47092 * 30.02341 * 1 2 3 35 35 H 1.09007 * 109.46345 * 150.02237 * 1 2 3 36 36 H 1.08996 * 109.69247 * 43.86666 * 7 6 2 37 37 H 1.09000 * 109.69193 * 283.28574 * 7 6 2 38 38 H 0.97006 * 119.99925 * 0.02562 * 12 10 8 39 39 H 1.09000 * 110.62631 * 123.02505 * 15 13 12 40 40 H 1.09001 * 110.76491 * 0.06377 * 15 13 12 41 41 H 1.09004 * 110.67674 * 313.31405 * 18 16 15 42 42 H 1.08997 * 110.73868 * 190.17454 * 18 16 15 43 43 H 1.09001 * 110.62727 * 241.55018 * 19 18 16 44 44 H 1.08999 * 110.62403 * 118.68736 * 19 18 16 45 45 H 0.96998 * 119.99801 * 179.97438 * 26 25 23 46 46 H 1.09000 * 109.45724 * 49.95725 * 31 8 7 47 47 H 1.08995 * 109.45056 * 169.89255 * 31 8 7 48 48 H 1.09004 * 109.68835 * 283.11025 * 32 5 4 49 49 H 1.08995 * 109.69537 * 43.68730 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6945 0.0019 5 6 3.5328 -0.6330 0.0038 6 6 2.2552 -1.0871 0.0005 7 6 1.8724 -2.5430 -0.0023 8 6 3.1019 -3.3643 -0.4122 9 1 3.3153 -3.1962 -1.4678 10 6 2.8271 -4.8281 -0.1825 11 8 1.7565 -5.1812 0.2647 12 7 3.7711 -5.7448 -0.4738 13 6 3.5038 -7.1678 -0.2511 14 1 2.4474 -7.3895 -0.4029 15 6 3.9512 -7.5910 1.1698 16 6 5.0458 -8.6670 0.8996 17 1 5.7433 -8.8441 1.7183 18 6 4.2688 -9.9174 0.3769 19 6 3.8213 -9.4900 -1.0426 20 6 4.3890 -8.0457 -1.1862 21 1 4.5095 -7.6873 -2.2084 22 7 5.6494 -8.1498 -0.3753 23 6 6.9486 -7.8623 -0.6988 24 1 7.7107 -7.8733 0.0664 25 6 7.2860 -7.5566 -2.0101 26 7 8.3813 -6.8728 -2.2656 27 14 6.1857 -8.1159 -3.4123 28 1 5.2197 -7.0377 -3.7436 29 1 7.0181 -8.4181 -4.6043 30 1 5.4447 -9.3360 -3.0036 31 6 4.3081 -2.9340 0.4269 32 6 4.7470 -1.5239 0.0108 33 1 -0.3633 0.0003 1.0277 34 1 -0.3633 0.8898 -0.5142 35 1 -0.3632 -0.8903 -0.5135 36 1 1.0652 -2.7091 -0.7156 37 1 1.5486 -2.8395 0.9954 38 1 4.6276 -5.4623 -0.8311 39 1 3.1167 -8.0226 1.7225 40 1 4.3714 -6.7433 1.7111 41 1 3.4032 -10.1236 1.0065 42 1 4.9248 -10.7864 0.3274 43 1 2.7339 -9.4843 -1.1170 44 1 4.2531 -10.1490 -1.7959 45 1 8.6172 -6.6595 -3.1819 46 1 4.0346 -2.9328 1.4820 47 1 5.1297 -3.6319 0.2660 48 1 5.1856 -1.5546 -0.9866 49 1 5.4786 -1.1421 0.7227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097726425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:14 Heat of formation + Delta-G solvation = 109.392393 kcal Electronic energy + Delta-G solvation = -31456.563778 eV Core-core repulsion = 27422.064837 eV Total energy + Delta-G solvation = -4034.498940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.52738 -40.27374 -39.05752 -36.60747 -35.06173 -33.95797 -32.66002 -30.72099 -30.65057 -29.74569 -29.29815 -28.26174 -27.99765 -24.77741 -24.04207 -23.38317 -21.72480 -21.51561 -20.35987 -20.30533 -19.41145 -19.01449 -17.56313 -17.13006 -17.09256 -16.56881 -16.44551 -15.15080 -15.08986 -14.71341 -14.38822 -14.11137 -14.02318 -13.82801 -13.66369 -13.52085 -13.42977 -13.22862 -13.03139 -12.74440 -12.34933 -12.25078 -12.12310 -11.67164 -11.61617 -11.49545 -11.26249 -11.19290 -11.10458 -11.07887 -10.93676 -10.64436 -10.44733 -10.30739 -10.10306 -9.95854 -9.75470 -9.42622 -9.35561 -8.99161 -8.94573 -8.62477 -7.34563 -6.01854 -3.27380 1.41520 2.14168 2.43978 2.79653 3.18999 3.37423 3.38335 3.41908 4.03374 4.26302 4.42426 4.42920 4.56077 4.60479 4.64275 4.68458 4.78909 4.91975 5.03025 5.07150 5.19183 5.26496 5.32418 5.32823 5.34275 5.47625 5.56010 5.62739 5.71699 5.73683 5.74483 5.83697 5.87183 5.92876 5.97402 5.98825 6.05972 6.13097 6.17825 6.18867 6.37029 6.40341 6.42945 6.60970 6.68534 6.80095 6.96186 7.27176 7.86193 8.21571 8.38847 8.46001 8.62722 9.54930 10.14854 11.14109 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003209 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.803041 B = 8724.057749 C = 9668.250474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.286 5.286 3 N -0.102 5.102 4 N -0.262 5.262 5 C -0.017 4.017 6 C -0.016 4.016 7 C -0.021 4.021 8 C -0.104 4.104 9 H 0.104 0.896 10 C 0.519 3.481 11 O -0.555 6.555 12 N -0.704 5.704 13 C 0.132 3.868 14 H 0.086 0.914 15 C -0.136 4.136 16 C 0.141 3.859 17 H 0.096 0.904 18 C -0.133 4.133 19 C -0.135 4.135 20 C 0.115 3.885 21 H 0.095 0.905 22 N -0.605 5.605 23 C -0.225 4.225 24 H 0.099 0.901 25 C 0.018 3.982 26 N -0.909 5.909 27 Si 0.865 3.135 28 H -0.291 1.291 29 H -0.304 1.304 30 H -0.261 1.261 31 C -0.112 4.112 32 C -0.032 4.032 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.410 0.590 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.263 0.737 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.304 6.373 4.910 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.078 5.078 3 N -0.080 5.080 4 N -0.126 5.126 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.061 4.061 8 C -0.126 4.126 9 H 0.122 0.878 10 C 0.305 3.695 11 O -0.434 6.434 12 N -0.353 5.353 13 C 0.026 3.974 14 H 0.104 0.896 15 C -0.176 4.176 16 C 0.033 3.967 17 H 0.114 0.886 18 C -0.172 4.172 19 C -0.175 4.175 20 C 0.007 3.993 21 H 0.112 0.888 22 N -0.327 5.327 23 C -0.351 4.351 24 H 0.116 0.884 25 C -0.180 4.180 26 N -0.553 5.553 27 Si 0.697 3.303 28 H -0.219 1.219 29 H -0.233 1.233 30 H -0.186 1.186 31 C -0.151 4.151 32 C -0.071 4.071 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.711 7.809 5.055 18.258 hybrid contribution -0.400 -1.229 -1.265 1.808 sum -16.110 6.580 3.790 17.810 Atomic orbital electron populations 1.22270 0.72853 1.05897 1.05082 1.46804 1.09118 1.04637 1.47201 1.78567 0.96192 1.11300 1.21901 1.74796 1.09497 1.12066 1.16238 1.21766 0.95117 0.91284 1.07536 1.21850 0.91266 0.92274 1.09657 1.19894 0.97608 0.84508 1.04086 1.21332 0.96336 0.92008 1.02884 0.87808 1.20287 0.84114 0.87516 0.77596 1.90650 1.24894 1.81934 1.45886 1.46038 1.18011 1.06794 1.64498 1.22503 0.99029 0.79507 0.96410 0.89634 1.23344 0.98617 0.99865 0.95810 1.23035 0.92253 0.91300 0.90088 0.88600 1.23047 0.99149 0.99004 0.95999 1.23065 0.98936 0.97606 0.97898 1.23378 0.87116 0.93805 0.94986 0.88797 1.46917 1.01655 1.74996 1.09162 1.18658 0.81995 1.40090 0.94396 0.88369 1.24700 0.96601 1.00018 0.96698 1.69822 1.26518 1.39255 1.19750 0.87213 0.79558 0.80232 0.83268 1.21947 1.23257 1.18612 1.21672 0.96948 0.96458 0.99979 1.19978 0.92397 0.91124 1.03600 0.88981 0.88033 0.88238 0.89716 0.88536 0.75440 0.91857 0.91555 0.92364 0.92129 0.92339 0.91373 0.92739 0.90716 0.89049 0.89320 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.27 59.85 0.67 1.14 16 2 N -0.29 -3.17 3.73 -64.00 -0.24 -3.41 16 3 N -0.10 -1.44 13.19 60.35 0.80 -0.64 16 4 N -0.26 -4.01 12.40 33.16 0.41 -3.60 16 5 C -0.02 -0.22 7.11 -83.12 -0.59 -0.82 16 6 C -0.02 -0.19 6.76 -82.50 -0.56 -0.75 16 7 C -0.02 -0.22 4.70 -27.74 -0.13 -0.35 16 8 C -0.10 -1.19 2.50 -91.49 -0.23 -1.42 16 9 H 0.10 1.13 8.12 -51.93 -0.42 0.71 16 10 C 0.52 7.51 7.15 -10.98 -0.08 7.43 16 11 O -0.55 -9.30 15.47 5.56 0.09 -9.21 16 12 N -0.70 -11.10 4.89 -51.40 -0.25 -11.35 16 13 C 0.13 2.20 2.80 -65.43 -0.18 2.02 16 14 H 0.09 1.42 7.23 -51.93 -0.38 1.04 16 15 C -0.14 -2.15 6.23 -24.23 -0.15 -2.30 16 16 C 0.14 2.42 5.48 -62.59 -0.34 2.08 16 17 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 18 C -0.13 -2.07 6.47 -24.03 -0.16 -2.22 16 19 C -0.14 -2.29 6.20 -24.23 -0.15 -2.44 16 20 C 0.11 2.18 3.19 -62.80 -0.20 1.98 16 21 H 0.09 1.97 3.45 -51.93 -0.18 1.79 16 22 N -0.60 -12.74 2.85 -145.59 -0.41 -13.15 16 23 C -0.23 -5.72 10.94 -15.06 -0.16 -5.88 16 24 H 0.10 2.69 8.06 -52.49 -0.42 2.26 16 25 C 0.02 0.47 5.49 -17.43 -0.10 0.37 16 26 N -0.91 -26.07 13.97 55.49 0.78 -25.29 16 27 Si 0.86 20.51 24.62 -169.99 -4.19 16.32 16 28 H -0.29 -6.70 6.76 56.52 0.38 -6.32 16 29 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 30 H -0.26 -5.89 4.83 56.52 0.27 -5.61 16 31 C -0.11 -1.24 5.17 -26.45 -0.14 -1.38 16 32 C -0.03 -0.36 6.30 -27.71 -0.17 -0.53 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.40 7.72 -51.92 -0.40 0.00 16 36 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 37 H 0.10 1.04 7.78 -51.93 -0.40 0.64 16 38 H 0.41 6.74 7.99 -40.82 -0.33 6.42 16 39 H 0.06 0.90 7.83 -51.93 -0.41 0.50 16 40 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 41 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.85 7.82 -51.93 -0.41 0.45 16 44 H 0.07 1.24 6.57 -51.93 -0.34 0.90 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 47 H 0.09 1.06 7.30 -51.93 -0.38 0.68 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -32.41 376.42 -7.55 -39.96 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.53 Total: 7.79 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.67 Total: -3.08 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 1.08 Total: -57.45 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.19 Total: 16.32 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.41 -7.55 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097726425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.352 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds