Wall clock time and date at job start Wed Apr 1 2020 02:55:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 N 1.29110 * 126.01021 * 2 1
4 4 N 1.29022 * 110.25918 * 180.02562 * 3 2 1
5 5 C 1.32903 * 108.63565 * 0.02562 * 4 3 2
6 6 C 1.34396 * 126.00507 * 180.02562 * 2 1 3
7 7 C 1.50531 * 129.25660 * 359.84399 * 6 2 1
8 8 C 1.53436 * 108.32669 * 196.44277 * 7 6 2
9 9 H 1.09006 * 109.45277 * 70.30492 * 8 7 6
10 10 C 1.50697 * 109.46168 * 190.25518 * 8 7 6
11 11 O 1.21290 * 119.99619 * 0.02562 * 10 8 7
12 12 N 1.34773 * 120.00460 * 179.97438 * 10 8 7
13 13 C 1.46497 * 120.00186 * 180.02562 * 12 10 8
14 14 H 1.08999 * 110.55812 * 34.30158 * 13 12 10
15 15 C 1.54858 * 110.62907 * 271.39825 * 13 12 10
16 16 C 1.55838 * 103.44728 * 241.51162 * 15 13 12
17 17 H 1.09006 * 115.56107 * 159.56109 * 16 15 13
18 18 C 1.55843 * 105.06347 * 288.17416 * 16 15 13
19 19 C 1.54857 * 103.44455 * 71.82716 * 18 16 15
20 20 C 1.55763 * 103.59531 * 359.94057 * 19 18 16
21 21 H 1.08996 * 115.65186 * 159.69106 * 20 19 18
22 22 N 1.50244 * 101.05266 * 32.93914 * 16 15 13
23 23 C 1.36932 * 130.84189 * 126.01027 * 22 16 15
24 24 H 1.07994 * 120.00209 * 180.02562 * 23 22 16
25 25 C 1.38815 * 119.99642 * 0.03050 * 23 22 16
26 26 N 1.31611 * 120.00104 * 359.97438 * 25 23 22
27 27 Si 1.86807 * 119.99536 * 179.97438 * 25 23 22
28 28 H 1.48501 * 109.47028 * 59.99888 * 27 25 23
29 29 H 1.48502 * 109.46596 * 179.97438 * 27 25 23
30 30 H 1.48500 * 109.47112 * 299.99419 * 27 25 23
31 31 C 1.53104 * 109.55357 * 310.28613 * 8 7 6
32 32 C 1.50605 * 129.16079 * 179.78330 * 5 4 3
33 33 H 1.09009 * 109.46405 * 269.99730 * 1 2 3
34 34 H 1.09000 * 109.47133 * 29.99458 * 1 2 3
35 35 H 1.08996 * 109.47458 * 149.99758 * 1 2 3
36 36 H 1.08995 * 109.69855 * 76.73701 * 7 6 2
37 37 H 1.09001 * 109.69242 * 316.15247 * 7 6 2
38 38 H 0.96999 * 119.99889 * 0.02562 * 12 10 8
39 39 H 1.09009 * 110.62295 * 0.02562 * 15 13 12
40 40 H 1.08997 * 110.62442 * 122.85820 * 15 13 12
41 41 H 1.08997 * 110.62599 * 190.31291 * 18 16 15
42 42 H 1.09000 * 110.62822 * 313.17479 * 18 16 15
43 43 H 1.09000 * 110.62272 * 118.49012 * 19 18 16
44 44 H 1.09000 * 110.62108 * 241.50861 * 19 18 16
45 45 H 0.97009 * 119.99895 * 180.02562 * 26 25 23
46 46 H 1.09005 * 109.44935 * 190.09648 * 31 8 7
47 47 H 1.08998 * 109.45529 * 310.02668 * 31 8 7
48 48 H 1.08993 * 109.69263 * 316.34334 * 32 5 4
49 49 H 1.09003 * 109.68810 * 76.87829 * 32 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2240 1.0444 0.0000
4 7 3.4658 0.6941 -0.0005
5 6 3.5327 -0.6332 -0.0015
6 6 2.2550 -1.0872 -0.0005
7 6 1.8721 -2.5430 0.0020
8 6 3.1013 -3.3645 0.4126
9 1 3.3140 -3.1966 1.4684
10 6 2.8265 -4.8283 0.1827
11 8 1.7559 -5.1813 -0.2649
12 7 3.7706 -5.7450 0.4735
13 6 3.5036 -7.1679 0.2495
14 1 2.8714 -7.3053 -0.6277
15 6 2.8472 -7.8033 1.4999
16 6 3.8738 -8.8924 1.9343
17 1 3.7958 -9.2263 2.9690
18 6 3.7577 -10.0115 0.8559
19 6 4.4142 -9.3761 -0.3944
20 6 4.8374 -7.9590 0.0944
21 1 5.6099 -7.4672 -0.4968
22 7 5.1687 -8.2424 1.5366
23 6 6.3018 -7.9862 2.2616
24 1 7.1450 -7.5013 1.7924
25 6 6.3665 -8.3499 3.5997
26 7 5.3388 -8.9405 4.1716
27 14 7.9126 -8.0010 4.5886
28 1 8.1727 -6.5390 4.6011
29 1 7.7284 -8.4826 5.9812
30 1 9.0651 -8.7037 3.9696
31 6 4.3083 -2.9344 -0.4254
32 6 4.7468 -1.5243 -0.0068
33 1 -0.3632 0.0000 1.0278
34 1 -0.3633 0.8900 -0.5137
35 1 -0.3634 -0.8899 -0.5138
36 1 1.5487 -2.8396 -0.9957
37 1 1.0644 -2.7091 0.7149
38 1 4.6269 -5.4627 0.8311
39 1 2.7199 -7.0595 2.2866
40 1 1.8895 -8.2557 1.2428
41 1 4.3046 -10.9018 1.1661
42 1 2.7122 -10.2522 0.6633
43 1 5.2866 -9.9515 -0.7042
44 1 3.6941 -9.2998 -1.2092
45 1 5.3840 -9.1943 5.1068
46 1 5.1297 -3.6325 -0.2638
47 1 4.0356 -2.9332 -1.4808
48 1 5.4794 -1.1427 -0.7180
49 1 5.1848 -1.5542 0.9909
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001097726426.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:17
Heat of formation + Delta-G solvation = 98.437535 kcal
Electronic energy + Delta-G solvation = -31092.573766 eV
Core-core repulsion = 27057.599787 eV
Total energy + Delta-G solvation = -4034.973979 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-43.56305 -40.08618 -38.75674 -36.61120 -35.08341 -33.88251 -32.57188 -30.75275
-30.66121 -29.14042 -28.84288 -28.09837 -27.72379 -24.77741 -24.15590 -23.44162
-21.64553 -21.43090 -20.24111 -19.87502 -19.43702 -18.65081 -17.50409 -17.07791
-17.04541 -16.48894 -15.92615 -15.15751 -14.86941 -14.68032 -14.24327 -14.07615
-14.03696 -13.99695 -13.59015 -13.54226 -13.42645 -13.10096 -12.87964 -12.32733
-12.13768 -12.07830 -11.88109 -11.68072 -11.39166 -11.27533 -11.17115 -11.12655
-10.97779 -10.91731 -10.69268 -10.55809 -10.40389 -10.15192 -10.13526 -9.96929
-9.70533 -9.27515 -9.18696 -9.01272 -8.97934 -8.51096 -6.99612 -5.78748
-3.17839 1.38347 2.11962 2.39349 2.85815 3.33847 3.38755 3.40263
3.43273 3.99239 4.25171 4.36625 4.41657 4.59694 4.62087 4.64152
4.72970 4.91801 5.02110 5.06569 5.18025 5.26935 5.27429 5.32442
5.42664 5.59726 5.65366 5.67391 5.68850 5.82277 5.84390 5.86347
5.98515 6.01157 6.06247 6.10058 6.10960 6.26185 6.37249 6.37677
6.44706 6.55798 6.69964 6.78326 6.90619 7.06733 7.27696 7.42171
7.74766 7.92346 8.10884 8.34989 8.52953 9.02688 9.66029 10.46859
11.30282
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.013413 B = 0.002926 C = 0.002602
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2086.949966 B = 9565.760808 C =10759.749927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.285 5.285
3 N -0.101 5.101
4 N -0.262 5.262
5 C -0.020 4.020
6 C -0.014 4.014
7 C -0.023 4.023
8 C -0.103 4.103
9 H 0.104 0.896
10 C 0.517 3.483
11 O -0.554 6.554
12 N -0.701 5.701
13 C 0.129 3.871
14 H 0.078 0.922
15 C -0.142 4.142
16 C 0.156 3.844
17 H 0.151 0.849
18 C -0.139 4.139
19 C -0.127 4.127
20 C 0.125 3.875
21 H 0.089 0.911
22 N -0.590 5.590
23 C -0.216 4.216
24 H 0.078 0.922
25 C -0.009 4.009
26 N -0.920 5.920
27 Si 0.914 3.086
28 H -0.285 1.285
29 H -0.291 1.291
30 H -0.286 1.286
31 C -0.111 4.111
32 C -0.031 4.031
33 H 0.092 0.908
34 H 0.101 0.899
35 H 0.100 0.900
36 H 0.096 0.904
37 H 0.086 0.914
38 H 0.404 0.596
39 H 0.058 0.942
40 H 0.052 0.948
41 H 0.055 0.945
42 H 0.048 0.952
43 H 0.057 0.943
44 H 0.051 0.949
45 H 0.254 0.746
46 H 0.086 0.914
47 H 0.074 0.926
48 H 0.088 0.912
49 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.014 10.913 -9.163 16.349
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.077 5.077
3 N -0.079 5.079
4 N -0.127 5.127
5 C -0.160 4.160
6 C -0.148 4.148
7 C -0.062 4.062
8 C -0.125 4.125
9 H 0.122 0.878
10 C 0.303 3.697
11 O -0.433 6.433
12 N -0.350 5.350
13 C 0.023 3.977
14 H 0.096 0.904
15 C -0.183 4.183
16 C 0.050 3.950
17 H 0.168 0.832
18 C -0.179 4.179
19 C -0.167 4.167
20 C 0.016 3.984
21 H 0.107 0.893
22 N -0.311 5.311
23 C -0.344 4.344
24 H 0.096 0.904
25 C -0.205 4.205
26 N -0.567 5.567
27 Si 0.745 3.255
28 H -0.212 1.212
29 H -0.216 1.216
30 H -0.213 1.213
31 C -0.149 4.149
32 C -0.071 4.071
33 H 0.111 0.889
34 H 0.120 0.880
35 H 0.119 0.881
36 H 0.114 0.886
37 H 0.104 0.896
38 H 0.239 0.761
39 H 0.077 0.923
40 H 0.071 0.929
41 H 0.073 0.927
42 H 0.066 0.934
43 H 0.076 0.924
44 H 0.070 0.930
45 H 0.065 0.935
46 H 0.104 0.896
47 H 0.093 0.907
48 H 0.107 0.893
49 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -8.577 12.233 -9.182 17.536
hybrid contribution 0.839 -0.742 0.760 1.353
sum -7.738 11.491 -8.422 16.213
Atomic orbital electron populations
1.22288 0.72756 1.05981 1.05157 1.46813 1.09174 1.04620 1.47080
1.78566 0.96151 1.11320 1.21883 1.74784 1.09585 1.12025 1.16284
1.21719 0.95074 0.91312 1.07897 1.21881 0.91240 0.92330 1.09375
1.19903 0.97816 0.84395 1.04134 1.21329 0.96097 0.92280 1.02828
0.87757 1.20237 0.84327 0.87367 0.77802 1.90661 1.24585 1.81973
1.46056 1.46008 1.17749 1.07064 1.64170 1.22637 0.98385 0.78717
0.98002 0.90366 1.23453 0.98091 1.00184 0.96556 1.23681 0.82842
0.88840 0.99654 0.83218 1.23070 0.97966 0.99945 0.96913 1.22855
0.99344 0.97446 0.97090 1.23221 0.92924 0.93738 0.88502 0.89328
1.46599 1.12985 1.67624 1.03868 1.18950 0.91116 1.32813 0.91554
0.90423 1.24695 0.97848 1.01211 0.96706 1.69476 1.29355 1.45935
1.11935 0.86163 0.82242 0.77832 0.79282 1.21216 1.21647 1.21277
1.21665 0.96891 0.96221 1.00110 1.19979 0.92464 0.91203 1.03412
0.88942 0.87991 0.88123 0.88562 0.89554 0.76137 0.92300 0.92900
0.92652 0.93354 0.92438 0.93048 0.93491 0.89586 0.90703 0.89329
0.89391
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.45 11.27 59.85 0.67 1.13 16
2 N -0.28 -3.08 3.73 -64.00 -0.24 -3.32 16
3 N -0.10 -1.39 13.19 60.35 0.80 -0.60 16
4 N -0.26 -3.85 12.40 33.17 0.41 -3.44 16
5 C -0.02 -0.25 7.11 -83.12 -0.59 -0.84 16
6 C -0.01 -0.16 6.76 -82.50 -0.56 -0.72 16
7 C -0.02 -0.24 4.68 -27.74 -0.13 -0.36 16
8 C -0.10 -1.13 2.50 -91.49 -0.23 -1.36 16
9 H 0.10 1.12 8.12 -51.93 -0.42 0.69 16
10 C 0.52 7.41 7.15 -10.99 -0.08 7.34 16
11 O -0.55 -9.56 15.50 5.55 0.09 -9.47 16
12 N -0.70 -10.65 4.90 -51.39 -0.25 -10.90 16
13 C 0.13 2.21 2.75 -65.43 -0.18 2.03 16
14 H 0.08 1.35 7.30 -51.93 -0.38 0.97 16
15 C -0.14 -2.75 6.22 -24.24 -0.15 -2.90 16
16 C 0.16 3.40 4.69 -62.80 -0.29 3.11 16
17 H 0.15 3.78 5.57 -51.93 -0.29 3.49 16
18 C -0.14 -2.64 6.44 -24.23 -0.16 -2.80 16
19 C -0.13 -2.19 6.43 -24.28 -0.16 -2.35 16
20 C 0.12 2.26 5.08 -62.59 -0.32 1.94 16
21 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16
22 N -0.59 -13.22 2.99 -145.53 -0.44 -13.66 16
23 C -0.22 -5.41 10.59 -15.06 -0.16 -5.57 16
24 H 0.08 1.86 7.83 -52.49 -0.41 1.45 16
25 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16
26 N -0.92 -25.03 10.48 55.49 0.58 -24.45 16
27 Si 0.91 20.79 29.55 -169.99 -5.02 15.77 16
28 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16
29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
30 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16
31 C -0.11 -1.04 5.18 -26.42 -0.14 -1.18 16
32 C -0.03 -0.31 6.31 -27.68 -0.17 -0.48 16
33 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16
34 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16
35 H 0.10 0.41 7.96 -51.93 -0.41 -0.01 16
36 H 0.10 1.01 7.78 -51.93 -0.40 0.60 16
37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16
38 H 0.40 5.91 7.97 -40.82 -0.33 5.58 16
39 H 0.06 1.23 7.98 -51.92 -0.41 0.82 16
40 H 0.05 0.96 7.83 -51.93 -0.41 0.55 16
41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16
42 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16
43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
44 H 0.05 0.77 7.82 -51.93 -0.41 0.37 16
45 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16
46 H 0.09 0.75 7.30 -51.93 -0.38 0.37 16
47 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16
48 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16
49 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
LS Contribution 385.56 15.07 5.81 5.81
Total: -1.00 -31.87 385.56 -8.59 -40.46
By element:
Atomic # 1 Polarization: 14.72 SS G_CDS: -7.59 Total: 7.13 kcal
Atomic # 6 Polarization: -0.60 SS G_CDS: -2.73 Total: -3.33 kcal
Atomic # 7 Polarization: -57.23 SS G_CDS: 0.86 Total: -56.36 kcal
Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -31.87 -8.59 -40.46 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001097726426.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 138.897 kcal
(2) G-P(sol) polarization free energy of solvation -31.868 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal
(6) G-S(sol) free energy of system = (1) + (5) 98.438 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds